Wall clock time and date at job start Tue Mar 31 2020 06:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 116.99983 * 2 1 4 4 O 1.20823 * 120.00207 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00235 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46785 * 60.00163 * 5 3 2 7 7 C 1.52998 * 109.47565 * 180.02562 * 5 3 2 8 8 C 1.52992 * 109.47125 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47076 * 299.99917 * 8 7 5 10 10 N 1.46908 * 109.46772 * 180.02562 * 9 8 7 11 11 C 1.47480 * 110.99907 * 79.02940 * 10 9 8 12 12 C 1.53515 * 87.93050 * 138.70117 * 11 10 9 13 13 C 1.50696 * 114.17100 * 220.32968 * 12 11 10 14 14 H 1.08000 * 120.00309 * 93.83942 * 13 12 11 15 15 C 1.37883 * 120.00048 * 273.83883 * 13 12 11 16 16 N 1.31520 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00362 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47007 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46926 * 119.99704 * 17 15 13 20 20 H 1.48498 * 109.47416 * 240.00142 * 17 15 13 21 21 C 1.47486 * 110.99674 * 174.99974 * 10 9 8 22 22 C 1.52997 * 109.47096 * 60.00447 * 9 8 7 23 23 C 1.53000 * 109.46972 * 300.00287 * 5 3 2 24 24 H 1.08996 * 109.46939 * 299.99608 * 1 2 3 25 25 H 1.08995 * 109.47299 * 59.99786 * 1 2 3 26 26 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46808 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.46581 * 299.99914 * 6 5 3 29 29 H 1.08992 * 109.47085 * 60.00244 * 6 5 3 30 30 H 1.08999 * 109.47179 * 59.99560 * 7 5 3 31 31 H 1.09002 * 109.47081 * 300.00243 * 7 5 3 32 32 H 1.09005 * 109.47307 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47302 * 60.00087 * 8 7 5 34 34 H 1.09000 * 109.47197 * 299.99456 * 9 8 7 35 35 H 1.09004 * 113.47564 * 253.46110 * 11 10 9 36 36 H 1.08993 * 113.47671 * 23.93538 * 11 10 9 37 37 H 1.09001 * 114.17177 * 87.61779 * 12 11 10 38 38 H 0.96998 * 119.99675 * 180.02562 * 16 15 13 39 39 H 1.09000 * 113.47612 * 336.06529 * 21 10 9 40 40 H 1.09003 * 113.47275 * 106.52680 * 21 10 9 41 41 H 1.09003 * 109.47271 * 59.99838 * 22 9 8 42 42 H 1.09002 * 109.47100 * 179.97438 * 22 9 8 43 43 H 1.08995 * 109.47338 * 299.99424 * 23 5 3 44 44 H 1.09004 * 109.47022 * 59.99956 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1128 0.5816 -1.2503 7 6 4.0002 2.7420 0.0002 8 6 5.5280 2.8221 -0.0011 9 6 6.0761 2.1275 1.2472 10 7 7.5431 2.2049 1.2463 11 6 8.0026 3.5322 1.6961 12 6 9.0984 2.8186 2.5003 13 6 9.3466 3.4095 3.8642 14 1 8.8396 3.0059 4.7281 15 6 10.2212 4.4656 4.0092 16 7 10.8383 4.9576 2.9571 17 14 10.5284 5.1986 5.6996 18 1 9.7179 4.4714 6.7092 19 1 11.9688 5.0739 6.0389 20 1 10.1434 6.6328 5.6948 21 6 8.1024 1.6505 2.4933 22 6 5.6423 0.6603 1.2464 23 6 4.1139 0.5810 1.2483 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 5.2014 0.6383 -1.2505 28 1 3.8038 -0.4637 -1.2503 29 1 3.7228 1.0759 -2.1399 30 1 3.6108 3.2356 0.8906 31 1 3.6100 3.2368 -0.8893 32 1 5.8371 3.8674 -0.0010 33 1 5.9170 2.3286 -0.8918 34 1 5.6872 2.6210 2.1379 35 1 8.3912 4.1536 0.8892 36 1 7.2770 4.0546 2.3194 37 1 10.0127 2.6288 1.9381 38 1 11.4538 5.7002 3.0591 39 1 7.4033 1.6708 3.3294 40 1 8.5753 0.6773 2.3620 41 1 6.0313 0.1669 0.3557 42 1 6.0332 0.1654 2.1354 43 1 3.7246 1.0749 2.1385 44 1 3.8048 -0.4643 1.2481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168772978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:08 Heat of formation + Delta-G solvation = -69.438411 kcal Electronic energy + Delta-G solvation = -22952.438892 eV Core-core repulsion = 19677.186518 eV Total energy + Delta-G solvation = -3275.252374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.11344 -39.55599 -37.75704 -36.50276 -32.97459 -31.76414 -30.85441 -28.24852 -27.74560 -26.36598 -24.90906 -24.25435 -22.43712 -22.23500 -20.41147 -18.83580 -18.53176 -17.47066 -17.07439 -16.55809 -16.50913 -15.07860 -14.75901 -14.67880 -14.40086 -14.16393 -13.89012 -13.51214 -13.27964 -12.98585 -12.59027 -12.36178 -12.31480 -12.11664 -11.98694 -11.53249 -11.40058 -11.33394 -11.30594 -11.00788 -10.98585 -10.93218 -10.72538 -10.46511 -10.26326 -10.20845 -9.86148 -9.57564 -9.10290 -8.88704 -8.42781 -7.95241 -6.04967 -4.09097 2.06039 2.53003 3.27992 3.36429 3.39878 4.35718 4.41069 4.51379 4.58626 4.84530 4.88498 4.91914 5.00074 5.13474 5.21388 5.25342 5.27584 5.37143 5.53399 5.56167 5.65403 5.68271 5.76487 5.89515 5.96799 6.00754 6.08068 6.14152 6.19127 6.20902 6.29391 6.35374 6.44429 6.57872 6.65191 6.70598 6.81964 7.16671 7.22343 7.59262 7.74064 7.92946 8.12915 8.38993 8.94376 9.55885 11.04644 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034971 B = 0.003404 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.473288 B = 8222.948243 C = 8342.843596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.508 6.508 5 C -0.047 4.047 6 C -0.145 4.145 7 C -0.097 4.097 8 C -0.106 4.106 9 C 0.049 3.951 10 N -0.480 5.480 11 C 0.006 3.994 12 C 0.041 3.959 13 C -0.515 4.515 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.003 4.003 22 C -0.109 4.109 23 C -0.104 4.104 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 -10.030 -7.242 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.395 6.395 5 C -0.048 4.048 6 C -0.202 4.202 7 C -0.135 4.135 8 C -0.144 4.144 9 C -0.061 4.061 10 N -0.202 5.202 11 C -0.123 4.123 12 C 0.022 3.978 13 C -0.553 4.553 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.731 -9.866 -7.968 20.994 hybrid contribution -0.600 0.965 1.682 2.030 sum -17.331 -8.901 -6.287 20.473 Atomic orbital electron populations 1.23252 0.76773 1.03558 1.02450 1.86524 1.23045 1.33687 1.84032 1.23996 0.92051 0.81118 0.71562 1.90649 1.67186 1.36447 1.45196 1.20606 0.85627 0.99291 0.99249 1.21981 1.03145 1.00353 0.94737 1.21485 0.96612 0.92183 1.03212 1.21506 0.92778 1.01368 0.98729 1.22196 0.91713 0.95113 0.97045 1.68912 1.06404 1.11563 1.33329 1.24007 0.99175 0.90964 0.98111 1.20099 0.92624 0.89629 0.95495 1.21081 1.25429 1.15896 0.92932 0.92462 1.25020 0.95306 0.96781 0.96538 1.69980 1.28309 1.25244 1.28824 0.86577 0.78064 0.79026 0.84587 1.19745 1.20922 1.21006 1.23943 0.98755 1.00091 0.90423 1.21578 0.93176 0.96904 1.03050 1.21592 0.96927 1.00498 0.95244 0.91995 0.92037 0.88169 0.89589 0.91475 0.92353 0.91225 0.91153 0.91327 0.90857 0.93922 0.91905 0.93041 0.91876 0.92950 0.92965 0.92183 0.90689 0.91349 0.91620 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.87 10.37 -39.24 -0.41 -4.27 16 3 C 0.47 5.90 6.55 36.01 0.24 6.13 16 4 O -0.51 -7.65 15.73 -18.75 -0.29 -7.95 16 5 C -0.05 -0.54 0.71 -155.66 -0.11 -0.65 16 6 C -0.15 -1.45 7.71 37.16 0.29 -1.16 16 7 C -0.10 -1.24 4.02 -26.74 -0.11 -1.35 16 8 C -0.11 -1.50 5.09 -26.74 -0.14 -1.64 16 9 C 0.05 0.77 1.55 -67.71 -0.10 0.67 16 10 N -0.48 -9.26 6.13 -236.57 -1.45 -10.71 16 11 C 0.01 0.14 6.82 -7.54 -0.05 0.09 16 12 C 0.04 1.00 3.77 -91.24 -0.34 0.66 16 13 C -0.52 -13.95 8.82 -34.44 -0.30 -14.25 16 14 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.07 1.82 5.46 -17.81 -0.10 1.73 16 16 N -0.89 -25.49 13.26 55.43 0.74 -24.75 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.00 -0.07 6.13 -7.54 -0.05 -0.12 16 22 C -0.11 -1.44 4.91 -26.71 -0.13 -1.58 16 23 C -0.10 -1.20 4.67 -26.70 -0.12 -1.33 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.88 4.80 -51.93 -0.25 0.63 16 28 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 33 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 34 H 0.04 0.74 7.55 -51.93 -0.39 0.35 16 35 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.05 1.18 7.57 -51.93 -0.39 0.79 16 37 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 42 H 0.07 0.93 7.34 -51.93 -0.38 0.55 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -29.58 342.53 -8.75 -38.33 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.50 Total: -0.36 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 0.03 Total: -11.46 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.72 Total: -35.47 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.70 Total: -12.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.58 -8.75 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168772978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.106 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds