Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99782 * 2 1 4 4 H 1.48496 * 109.46838 * 174.66017 * 3 2 1 5 5 H 1.48496 * 109.47582 * 294.66326 * 3 2 1 6 6 H 1.48503 * 109.47090 * 54.66618 * 3 2 1 7 7 C 1.37872 * 119.99927 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85167 * 348.87560 * 7 2 1 9 9 C 1.53231 * 108.53843 * 231.33079 * 8 7 2 10 10 C 1.52957 * 109.40215 * 305.37145 * 9 8 7 11 11 H 1.08997 * 109.35861 * 303.52588 * 10 9 8 12 12 N 1.46503 * 109.41509 * 183.70258 * 10 9 8 13 13 C 1.34779 * 119.99924 * 84.64630 * 12 10 9 14 14 O 1.21287 * 119.99704 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00341 * 180.02562 * 13 12 10 16 16 H 1.09001 * 109.47102 * 59.99922 * 15 13 12 17 17 C 1.53002 * 109.47046 * 300.00195 * 15 13 12 18 18 C 1.53001 * 109.47099 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46950 * 60.00075 * 18 17 15 20 20 C 1.52999 * 109.47178 * 299.99508 * 19 18 17 21 21 C 1.52998 * 109.47575 * 180.02562 * 15 13 12 22 22 H 1.09001 * 109.47010 * 59.99816 * 21 15 13 23 23 O 1.42900 * 109.46893 * 300.00423 * 21 15 13 24 24 C 1.52961 * 109.81786 * 63.60125 * 10 9 8 25 25 C 1.51277 * 120.84838 * 168.86060 * 7 2 1 26 26 H 0.97003 * 120.00254 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62636 * 351.04607 * 8 7 2 28 28 H 1.08993 * 109.62735 * 111.42315 * 8 7 2 29 29 H 1.08996 * 109.48371 * 185.39564 * 9 8 7 30 30 H 1.09001 * 109.48595 * 65.35013 * 9 8 7 31 31 H 0.96998 * 120.00274 * 264.65451 * 12 10 9 32 32 H 1.08994 * 109.47227 * 299.99530 * 17 15 13 33 33 H 1.09000 * 109.47330 * 60.00037 * 17 15 13 34 34 H 1.09002 * 109.46946 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47310 * 299.99886 * 18 17 15 36 36 H 1.08994 * 109.47365 * 60.00189 * 19 18 17 37 37 H 1.09005 * 109.47248 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47528 * 300.00581 * 20 19 18 39 39 H 1.09000 * 109.47349 * 179.97438 * 20 19 18 40 40 H 0.96707 * 113.99908 * 180.02562 * 23 21 15 41 41 H 1.09001 * 109.48520 * 56.38053 * 24 10 9 42 42 H 1.09001 * 109.48438 * 176.41028 * 24 10 9 43 43 H 1.09003 * 109.62284 * 8.95236 * 25 7 2 44 44 H 1.09003 * 109.62051 * 248.38430 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1303 5 1 1.9907 2.3387 -1.2723 6 1 1.7953 2.4513 1.1422 7 6 2.0045 -1.1940 -0.0005 8 6 1.2888 -2.5030 0.2494 9 6 2.0331 -3.2622 1.3530 10 6 3.5043 -3.4127 0.9627 11 1 3.5724 -3.9119 -0.0039 12 7 4.1970 -4.2144 1.9746 13 6 4.1669 -5.5600 1.9048 14 8 3.5667 -6.1072 1.0040 15 6 4.8788 -6.3847 2.9459 16 1 4.4660 -6.1627 3.9300 17 6 6.3711 -6.0471 2.9310 18 6 7.0939 -6.8839 3.9885 19 6 6.9041 -8.3703 3.6797 20 6 5.4119 -8.7079 3.6947 21 6 4.6896 -7.8710 2.6363 22 1 5.1028 -8.0926 1.6523 23 8 3.2960 -8.1867 2.6498 24 6 4.1600 -2.0339 0.8702 25 6 3.4959 -1.2286 -0.2515 26 1 -0.4851 0.8400 0.0004 27 1 0.2650 -2.3057 0.5673 28 1 1.2803 -3.0960 -0.6650 29 1 1.5877 -4.2489 1.4793 30 1 1.9601 -2.7076 2.2885 31 1 4.6772 -3.7767 2.6948 32 1 6.7840 -6.2691 1.9470 33 1 6.5063 -4.9882 3.1514 34 1 8.1569 -6.6431 3.9781 35 1 6.6809 -6.6616 4.9724 36 1 7.3171 -8.5927 2.6958 37 1 7.4187 -8.9666 4.4333 38 1 4.9989 -8.4856 4.6786 39 1 5.2767 -9.7668 3.4743 40 1 3.1011 -9.1150 2.4613 41 1 4.0367 -1.5084 1.8172 42 1 5.2222 -2.1502 0.6546 43 1 3.8901 -0.2123 -0.2554 44 1 3.6946 -1.7051 -1.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181091429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -123.642130 kcal Electronic energy + Delta-G solvation = -23053.717654 eV Core-core repulsion = 19776.114830 eV Total energy + Delta-G solvation = -3277.602824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 6.02 seconds Orbital eigenvalues (eV) -40.17902 -38.22496 -36.48154 -35.62354 -33.58136 -31.90446 -30.88075 -29.67657 -29.54557 -27.15484 -23.79269 -22.75057 -21.78871 -21.54334 -20.31045 -19.71826 -19.31341 -17.27896 -16.99489 -15.96283 -15.79480 -15.00575 -14.84892 -14.43506 -14.24136 -13.98741 -13.77802 -13.29805 -13.12195 -12.82389 -12.74032 -12.39213 -12.17308 -12.01650 -11.79637 -11.54029 -11.49951 -11.07949 -10.99635 -10.89256 -10.79105 -10.69642 -10.45742 -10.18572 -9.90426 -9.85972 -9.36915 -9.30772 -8.95099 -8.74410 -8.37868 -8.16781 -6.07533 -3.96457 3.09789 3.27054 3.35564 3.37160 3.61929 4.07263 4.40134 4.41919 4.50174 4.72109 4.91170 5.04603 5.08745 5.15189 5.17161 5.19697 5.26565 5.53406 5.58688 5.75252 5.78711 5.80278 5.83976 5.85579 5.94747 5.95439 6.14356 6.23257 6.53076 6.61442 6.77247 6.85028 6.91102 7.10815 7.16753 7.33375 7.45674 7.68520 7.71122 7.83271 7.90128 8.05126 8.44020 8.74860 9.00913 9.57729 11.02102 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.003866 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.745435 B = 7240.500143 C = 7801.280772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.488 4.488 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.155 3.845 11 H 0.076 0.924 12 N -0.728 5.728 13 C 0.514 3.486 14 O -0.528 6.528 15 C -0.101 4.101 16 H 0.099 0.901 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.153 4.153 21 C 0.127 3.873 22 H 0.059 0.941 23 O -0.551 6.551 24 C -0.113 4.113 25 C -0.022 4.022 26 H 0.263 0.737 27 H 0.053 0.947 28 H 0.006 0.994 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.390 0.610 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.373 0.627 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.043 0.957 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.675 -13.876 9.291 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.507 4.507 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.053 3.947 11 H 0.094 0.906 12 N -0.378 5.378 13 C 0.299 3.701 14 O -0.404 6.404 15 C -0.123 4.123 16 H 0.117 0.883 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.190 4.190 21 C 0.067 3.933 22 H 0.077 0.923 23 O -0.355 6.355 24 C -0.151 4.151 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.219 0.781 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.010 -13.508 8.757 21.341 hybrid contribution 0.633 0.551 0.408 0.933 sum 14.643 -12.958 9.165 21.594 Atomic orbital electron populations 1.69913 1.06253 1.26767 1.49378 1.24857 0.94613 0.98527 0.94681 0.86759 0.81013 0.83821 0.77773 1.18128 1.20957 1.21282 1.20052 0.90897 0.92049 1.47719 1.19318 0.97226 0.93298 0.92600 1.21961 0.94102 0.98473 1.00779 1.21001 0.92584 0.90517 0.90639 0.90613 1.46408 1.54714 1.05995 1.30704 1.20288 0.80858 0.82669 0.86272 1.90699 1.42893 1.71453 1.35338 1.21373 0.96482 0.94347 1.00104 0.88333 1.21519 0.92341 1.00562 1.00327 1.21571 1.00458 0.94766 0.98968 1.21506 0.95711 0.96396 1.02027 1.22333 0.96091 0.99955 1.00659 1.21444 0.82156 0.92521 0.97147 0.92300 1.86635 1.23084 1.31575 1.94208 1.21863 0.96786 0.94914 1.01554 1.19914 0.96115 0.96333 0.93584 0.92707 0.92809 0.97577 0.94592 0.93474 0.77689 0.91124 0.90663 0.91379 0.91556 0.91727 0.91672 0.91093 0.91556 0.78101 0.92743 0.94587 0.93864 0.96283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 12.82 55.43 0.71 -25.22 16 2 C 0.08 2.09 5.44 -17.82 -0.10 2.00 16 3 Si 0.88 20.69 27.95 -169.99 -4.75 15.94 16 4 H -0.26 -5.69 5.58 56.52 0.32 -5.37 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.49 -13.05 5.48 -98.92 -0.54 -13.59 16 8 C 0.01 0.36 5.93 -27.49 -0.16 0.19 16 9 C -0.11 -2.62 5.50 -26.63 -0.15 -2.77 16 10 C 0.16 3.16 2.35 -67.97 -0.16 3.00 16 11 H 0.08 1.72 7.58 -51.93 -0.39 1.32 16 12 N -0.73 -11.98 4.97 -53.85 -0.27 -12.25 16 13 C 0.51 8.72 6.97 -10.99 -0.08 8.64 16 14 O -0.53 -11.28 14.95 -12.72 -0.19 -11.47 16 15 C -0.10 -1.24 2.27 -91.77 -0.21 -1.45 16 16 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.11 -1.01 5.10 -26.73 -0.14 -1.15 16 18 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 19 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 20 C -0.15 -1.26 5.55 -26.71 -0.15 -1.41 16 21 C 0.13 1.49 2.45 -26.71 -0.07 1.42 16 22 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 23 O -0.55 -7.55 12.22 -53.50 -0.65 -8.21 16 24 C -0.11 -2.23 5.40 -26.63 -0.14 -2.37 16 25 C -0.02 -0.50 5.65 -27.48 -0.16 -0.66 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.05 1.54 7.19 -51.93 -0.37 1.16 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.39 5.18 8.02 -40.82 -0.33 4.86 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.37 3.43 9.08 45.56 0.41 3.84 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.99 4.36 -51.93 -0.23 0.76 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -32.71 336.82 -9.29 -42.01 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.86 Total: 4.30 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.36 Total: -10.18 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.44 Total: -37.46 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.84 Total: -19.68 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.75 Total: 15.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.71 -9.29 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181091429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.633 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds