Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99782 * 2 1 4 4 H 1.48496 * 109.46838 * 174.66017 * 3 2 1 5 5 H 1.48496 * 109.47582 * 294.66326 * 3 2 1 6 6 H 1.48503 * 109.47090 * 54.66618 * 3 2 1 7 7 C 1.37872 * 119.99927 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85167 * 348.87560 * 7 2 1 9 9 C 1.53231 * 108.53843 * 231.33079 * 8 7 2 10 10 C 1.52957 * 109.40215 * 305.37145 * 9 8 7 11 11 H 1.08997 * 109.35861 * 303.52588 * 10 9 8 12 12 N 1.46503 * 109.41509 * 183.70258 * 10 9 8 13 13 C 1.34779 * 119.99924 * 84.64630 * 12 10 9 14 14 O 1.21287 * 119.99704 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00341 * 180.02562 * 13 12 10 16 16 H 1.09001 * 109.47102 * 59.99922 * 15 13 12 17 17 C 1.53002 * 109.47046 * 300.00195 * 15 13 12 18 18 C 1.53001 * 109.47099 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46950 * 60.00075 * 18 17 15 20 20 C 1.52999 * 109.47178 * 299.99508 * 19 18 17 21 21 C 1.52998 * 109.47575 * 180.02562 * 15 13 12 22 22 H 1.09001 * 109.47010 * 59.99816 * 21 15 13 23 23 O 1.42900 * 109.46893 * 300.00423 * 21 15 13 24 24 C 1.52961 * 109.81786 * 63.60125 * 10 9 8 25 25 C 1.51277 * 120.84838 * 168.86060 * 7 2 1 26 26 H 0.97003 * 120.00254 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62636 * 351.04607 * 8 7 2 28 28 H 1.08993 * 109.62735 * 111.42315 * 8 7 2 29 29 H 1.08996 * 109.48371 * 185.39564 * 9 8 7 30 30 H 1.09001 * 109.48595 * 65.35013 * 9 8 7 31 31 H 0.96998 * 120.00274 * 264.65451 * 12 10 9 32 32 H 1.08994 * 109.47227 * 299.99530 * 17 15 13 33 33 H 1.09000 * 109.47330 * 60.00037 * 17 15 13 34 34 H 1.09002 * 109.46946 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47310 * 299.99886 * 18 17 15 36 36 H 1.08994 * 109.47365 * 60.00189 * 19 18 17 37 37 H 1.09005 * 109.47248 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47528 * 300.00581 * 20 19 18 39 39 H 1.09000 * 109.47349 * 179.97438 * 20 19 18 40 40 H 0.96707 * 113.99908 * 180.02562 * 23 21 15 41 41 H 1.09001 * 109.48520 * 56.38053 * 24 10 9 42 42 H 1.09001 * 109.48438 * 176.41028 * 24 10 9 43 43 H 1.09003 * 109.62284 * 8.95236 * 25 7 2 44 44 H 1.09003 * 109.62051 * 248.38430 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1303 5 1 1.9907 2.3387 -1.2723 6 1 1.7953 2.4513 1.1422 7 6 2.0045 -1.1940 -0.0005 8 6 1.2888 -2.5030 0.2494 9 6 2.0331 -3.2622 1.3530 10 6 3.5043 -3.4127 0.9627 11 1 3.5724 -3.9119 -0.0039 12 7 4.1970 -4.2144 1.9746 13 6 4.1669 -5.5600 1.9048 14 8 3.5667 -6.1072 1.0040 15 6 4.8788 -6.3847 2.9459 16 1 4.4660 -6.1627 3.9300 17 6 6.3711 -6.0471 2.9310 18 6 7.0939 -6.8839 3.9885 19 6 6.9041 -8.3703 3.6797 20 6 5.4119 -8.7079 3.6947 21 6 4.6896 -7.8710 2.6363 22 1 5.1028 -8.0926 1.6523 23 8 3.2960 -8.1867 2.6498 24 6 4.1600 -2.0339 0.8702 25 6 3.4959 -1.2286 -0.2515 26 1 -0.4851 0.8400 0.0004 27 1 0.2650 -2.3057 0.5673 28 1 1.2803 -3.0960 -0.6650 29 1 1.5877 -4.2489 1.4793 30 1 1.9601 -2.7076 2.2885 31 1 4.6772 -3.7767 2.6948 32 1 6.7840 -6.2691 1.9470 33 1 6.5063 -4.9882 3.1514 34 1 8.1569 -6.6431 3.9781 35 1 6.6809 -6.6616 4.9724 36 1 7.3171 -8.5927 2.6958 37 1 7.4187 -8.9666 4.4333 38 1 4.9989 -8.4856 4.6786 39 1 5.2767 -9.7668 3.4743 40 1 3.1011 -9.1150 2.4613 41 1 4.0367 -1.5084 1.8172 42 1 5.2222 -2.1502 0.6546 43 1 3.8901 -0.2123 -0.2554 44 1 3.6946 -1.7051 -1.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181091429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -146.259653 kcal Electronic energy + Delta-G solvation = -23054.698424 eV Core-core repulsion = 19776.114830 eV Total energy + Delta-G solvation = -3278.583593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -41.36252 -39.43998 -38.11633 -36.51078 -35.30715 -33.53441 -32.01830 -31.46014 -30.43119 -28.93789 -24.91892 -23.81138 -23.46208 -23.09315 -21.35648 -21.24142 -20.62975 -18.42820 -18.19868 -17.72210 -17.17915 -16.38730 -16.09483 -15.87052 -15.23788 -15.12393 -14.95789 -14.67616 -14.46913 -14.26733 -14.05882 -13.99568 -13.62268 -13.35427 -13.18303 -12.81796 -12.74782 -12.60312 -12.50302 -12.23168 -11.91741 -11.83279 -11.75385 -11.50863 -11.24094 -11.18446 -11.03687 -10.82577 -10.72143 -10.47656 -10.38223 -9.83241 -8.16926 -6.11670 1.42186 1.44635 1.54814 1.77243 2.29899 2.43405 3.10431 3.24563 3.62098 3.70196 4.00870 4.03629 4.20715 4.22126 4.28996 4.32655 4.36209 4.45015 4.49892 4.52509 4.69697 4.85982 4.87341 4.93569 4.99371 5.04196 5.10184 5.16222 5.17224 5.20003 5.22310 5.28366 5.29836 5.32367 5.51467 5.54649 5.56689 5.72132 5.77552 5.79589 6.33871 6.71514 6.93260 6.94028 7.42792 7.46310 8.94967 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.003866 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.745435 B = 7240.500143 C = 7801.280772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.226 1.226 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.502 4.502 8 C 0.011 3.989 9 C -0.101 4.101 10 C 0.167 3.833 11 H 0.049 0.951 12 N -0.715 5.715 13 C 0.508 3.492 14 O -0.579 6.579 15 C -0.094 4.094 16 H 0.109 0.891 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.142 4.142 21 C 0.121 3.879 22 H 0.043 0.957 23 O -0.581 6.581 24 C -0.103 4.103 25 C -0.024 4.024 26 H 0.263 0.737 27 H 0.018 0.982 28 H -0.016 1.016 29 H 0.020 0.980 30 H 0.050 0.950 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.388 0.612 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.406 -13.688 11.238 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.181 4.181 3 Si 0.769 3.231 4 H -0.149 1.149 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.521 4.521 8 C -0.027 4.027 9 C -0.140 4.140 10 C 0.063 3.937 11 H 0.067 0.933 12 N -0.367 5.367 13 C 0.295 3.705 14 O -0.458 6.458 15 C -0.116 4.116 16 H 0.127 0.873 17 C -0.144 4.144 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.062 3.938 22 H 0.061 0.939 23 O -0.389 6.389 24 C -0.141 4.141 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.002 0.998 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 17.792 -13.338 10.737 24.693 hybrid contribution -0.640 0.384 -0.261 0.791 sum 17.152 -12.954 10.476 23.911 Atomic orbital electron populations 1.70077 1.08276 1.27625 1.51412 1.25790 0.95321 1.02482 0.94520 0.85728 0.81231 0.78798 0.77342 1.14922 1.21251 1.21356 1.20610 0.93091 0.91673 1.46730 1.19260 0.96233 0.94338 0.92826 1.21757 0.95967 0.96894 0.99391 1.20573 0.91121 0.91583 0.90458 0.93312 1.46142 1.54230 1.05886 1.30427 1.21234 0.80062 0.82750 0.86453 1.90680 1.45052 1.72346 1.37682 1.21451 0.98071 0.93701 0.98339 0.87306 1.21562 0.89942 1.01928 1.00934 1.21573 1.01179 0.94182 0.98381 1.21542 0.94651 0.96796 1.02640 1.22237 0.96569 0.99946 0.99211 1.21592 0.81597 0.92896 0.97728 0.93888 1.86584 1.24637 1.33273 1.94366 1.21728 0.98316 0.93409 1.00688 1.19924 0.93846 0.97681 0.94765 0.92828 0.96276 0.99781 0.96122 0.93156 0.75274 0.91878 0.89308 0.89656 0.90694 0.91879 0.89813 0.90867 0.90312 0.76368 0.91545 0.90907 0.92701 0.96680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 12.82 21.45 0.28 -56.32 16 2 C 0.02 0.94 5.44 84.65 0.46 1.40 16 3 Si 0.94 41.97 27.95 68.60 1.92 43.89 16 4 H -0.23 -8.85 5.58 99.48 0.56 -8.29 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.50 -27.09 5.48 -16.17 -0.09 -27.18 16 8 C 0.01 0.64 5.93 30.10 0.18 0.82 16 9 C -0.10 -4.75 5.50 30.66 0.17 -4.58 16 10 C 0.17 6.68 2.35 44.96 0.11 6.79 16 11 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 12 N -0.72 -22.35 4.97 -442.66 -2.20 -24.55 16 13 C 0.51 16.92 6.97 87.65 0.61 17.53 16 14 O -0.58 -25.34 14.95 14.41 0.22 -25.12 16 15 C -0.09 -2.15 2.27 -11.54 -0.03 -2.17 16 16 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.11 -1.64 5.10 30.60 0.16 -1.49 16 18 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 19 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 20 C -0.14 -2.01 5.55 30.61 0.17 -1.84 16 21 C 0.12 2.72 2.45 30.61 0.07 2.80 16 22 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 23 O -0.58 -15.98 12.22 -131.51 -1.61 -17.59 16 24 C -0.10 -3.78 5.40 30.66 0.17 -3.61 16 25 C -0.02 -1.08 5.65 30.11 0.17 -0.91 16 26 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.02 1.14 7.19 -2.38 -0.02 1.13 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.41 9.57 8.02 -92.71 -0.74 8.82 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.14 7.56 -2.39 -0.02 1.12 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.65 8.14 -2.38 -0.02 0.64 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.39 7.20 9.08 -74.05 -0.67 6.53 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 2.31 4.36 -2.39 -0.01 2.30 16 44 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -74.50 336.82 0.54 -73.96 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.57 Total: 20.34 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 2.51 Total: -14.60 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.92 Total: -80.87 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.39 Total: -42.71 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.92 Total: 43.89 kcal Total: -74.50 0.54 -73.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181091429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.301 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds