Wall clock time and date at job start Tue Mar 31 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47158 * 299.99767 * 3 2 1 6 6 H 1.48502 * 109.46769 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 C 1.53007 * 109.47063 * 300.00464 * 15 13 12 17 17 C 1.52995 * 109.46927 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47302 * 359.97438 * 17 16 15 19 19 O 1.42904 * 109.47197 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47124 * 60.00003 * 18 17 16 21 21 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 22 22 C 1.53000 * 109.47200 * 300.00117 * 18 17 16 23 23 C 1.53000 * 109.47251 * 60.00252 * 22 18 17 24 24 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 26 26 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 27 27 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 28 28 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 29 29 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 30 30 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 31 31 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 32 32 H 1.09003 * 109.46582 * 300.00001 * 16 15 13 33 33 H 1.09001 * 109.46852 * 59.99630 * 16 15 13 34 34 H 1.09007 * 109.46486 * 239.99750 * 17 16 15 35 35 H 1.09002 * 109.46969 * 120.00080 * 17 16 15 36 36 H 0.96702 * 114.00170 * 59.99721 * 19 18 17 37 37 H 1.09003 * 109.46836 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.47071 * 60.00555 * 20 18 17 39 39 H 1.08998 * 109.47508 * 300.00200 * 21 15 13 40 40 H 1.09011 * 109.47182 * 60.00188 * 21 15 13 41 41 H 1.08998 * 109.47339 * 180.02562 * 22 18 17 42 42 H 1.09005 * 109.47048 * 299.99963 * 22 18 17 43 43 H 1.09008 * 109.46827 * 240.00263 * 23 22 18 44 44 H 1.08992 * 109.47143 * 120.00098 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9834 -7.3712 0.0066 14 8 0.7910 -7.5929 0.0074 15 6 2.9628 -8.5166 0.0123 16 6 3.8427 -8.4415 -1.2372 17 6 4.8373 -9.6040 -1.2311 18 6 4.6210 -10.4538 0.0227 19 8 5.5504 -11.5392 0.0287 20 6 3.1933 -11.0040 0.0257 21 6 2.1979 -9.8416 0.0179 22 6 4.8375 -9.5907 1.2673 23 6 3.8428 -8.4282 1.2613 24 1 -0.4851 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8894 29 1 0.8536 -5.0451 -0.8886 30 1 0.8542 -5.0445 0.8913 31 1 3.3863 -5.9232 0.0002 32 1 3.2161 -8.5035 -2.1270 33 1 4.3876 -7.4975 -1.2415 34 1 5.8544 -9.2119 -1.2328 35 1 4.6833 -10.2186 -2.1180 36 1 6.4773 -11.2635 0.0273 37 1 3.0394 -11.6098 0.9188 38 1 3.0391 -11.6189 -0.8609 39 1 1.5707 -9.8954 0.9078 40 1 1.5716 -9.9034 -0.8722 41 1 4.6838 -10.1962 2.1606 42 1 5.8546 -9.1987 1.2652 43 1 4.3875 -7.4840 1.2562 44 1 3.2163 -8.4815 2.1516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185282287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:54 Heat of formation + Delta-G solvation = -125.662880 kcal Electronic energy + Delta-G solvation = -22537.086327 eV Core-core repulsion = 19259.395877 eV Total energy + Delta-G solvation = -3277.690450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49981 -38.97023 -36.11096 -35.42079 -33.37105 -31.64378 -31.34655 -30.99124 -30.26815 -26.71602 -23.71319 -23.20800 -23.03243 -22.38455 -20.73509 -20.04650 -18.11263 -17.62148 -16.60708 -16.33317 -16.25149 -15.66377 -15.12580 -15.09942 -14.54807 -14.41793 -13.77949 -13.42249 -13.32620 -13.29989 -12.50501 -12.48472 -12.41677 -12.32026 -12.29675 -11.98031 -11.77099 -11.67009 -11.46156 -11.06236 -10.93983 -10.77732 -10.75593 -10.59199 -10.13397 -9.89681 -9.85746 -9.77673 -9.33178 -9.11326 -8.78700 -8.39771 -6.04065 -4.07292 2.74117 3.28147 3.32932 3.36063 3.39524 3.76768 4.10442 4.18931 4.42121 4.53194 4.64031 4.85765 4.87980 4.91982 4.94427 4.96786 5.04309 5.08243 5.11294 5.31801 5.59129 5.61007 5.67619 5.72068 5.75255 5.80466 5.82027 5.88561 5.90836 5.94187 6.07091 6.08571 6.13871 6.47187 6.57143 6.80815 6.97903 7.31997 7.61322 7.69231 7.73583 7.94648 8.34469 8.38951 8.99655 9.57118 11.07246 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036241 B = 0.002927 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.427869 B = 9562.972903 C = 9968.102157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.724 5.724 13 C 0.518 3.482 14 O -0.542 6.542 15 C -0.077 4.077 16 C -0.104 4.104 17 C -0.139 4.139 18 C 0.134 3.866 19 O -0.561 6.561 20 C -0.103 4.103 21 C -0.090 4.090 22 C -0.139 4.139 23 C -0.104 4.104 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.375 0.625 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.083 -21.636 0.035 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.374 5.374 13 C 0.303 3.697 14 O -0.419 6.419 15 C -0.080 4.080 16 C -0.142 4.142 17 C -0.177 4.177 18 C 0.093 3.907 19 O -0.367 6.367 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.177 4.177 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.222 0.778 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.494 -22.001 0.035 24.375 hybrid contribution 1.397 1.556 0.000 2.091 sum 11.890 -20.445 0.035 23.651 Atomic orbital electron populations 1.69974 1.06065 1.26605 1.50616 1.25036 0.94854 0.99325 0.95270 0.86530 0.80041 0.83761 0.77622 1.19755 1.20984 1.20987 1.21237 0.93012 0.90933 1.50853 0.92606 1.19032 0.93853 0.90875 0.97654 1.21883 0.99751 0.93389 1.00808 1.21652 0.91918 0.85169 1.01981 1.46230 1.10696 1.05938 1.74551 1.20400 0.89274 0.83900 0.76147 1.90695 1.16803 1.84782 1.49593 1.20771 0.95331 0.94733 0.97178 1.21523 0.97053 0.98852 0.96769 1.22166 0.99583 0.97206 0.98755 1.21110 0.90089 0.86066 0.93402 1.86553 1.18903 1.34063 1.97153 1.21459 0.91532 0.97867 1.03172 1.21343 0.96653 0.90824 1.03986 1.22168 0.99583 0.97142 0.98823 1.21530 0.97049 0.98835 0.96779 0.92958 0.96286 0.96278 0.92779 0.92767 0.91788 0.91787 0.76932 0.90892 0.90987 0.91359 0.90837 0.77782 0.91056 0.91074 0.90673 0.90648 0.90839 0.91359 0.90979 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 12 N -0.72 -10.06 5.34 -60.30 -0.32 -10.38 16 13 C 0.52 7.42 6.48 -10.98 -0.07 7.35 16 14 O -0.54 -10.00 15.98 5.55 0.09 -9.91 16 15 C -0.08 -0.80 0.61 -155.64 -0.10 -0.89 16 16 C -0.10 -0.91 4.88 -26.73 -0.13 -1.04 16 17 C -0.14 -1.03 5.33 -26.74 -0.14 -1.17 16 18 C 0.13 1.07 1.15 -90.62 -0.10 0.96 16 19 O -0.56 -4.53 12.98 -35.23 -0.46 -4.98 16 20 C -0.10 -0.93 5.36 -26.71 -0.14 -1.07 16 21 C -0.09 -0.95 4.28 -26.71 -0.11 -1.06 16 22 C -0.14 -1.03 5.33 -26.73 -0.14 -1.17 16 23 C -0.10 -0.91 4.89 -26.71 -0.13 -1.04 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.40 4.45 7.30 -40.82 -0.30 4.16 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 1.60 9.05 45.56 0.41 2.01 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.07 0.85 8.10 -51.92 -0.42 0.43 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.57 7.56 -51.92 -0.39 0.18 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -32.73 344.96 -8.54 -41.26 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.97 Total: 0.94 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.79 Total: -12.45 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.41 Total: -36.38 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.37 Total: -14.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.73 -8.54 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185282287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.399 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds