Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48498 * 109.47324 * 270.00109 * 3 2 1 5 5 H 1.48509 * 109.46890 * 29.99901 * 3 2 1 6 6 H 1.48498 * 109.47285 * 149.99473 * 3 2 1 7 7 C 1.37874 * 119.99982 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.85269 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53453 * 231.32254 * 8 7 2 10 10 C 1.52956 * 109.40545 * 305.37065 * 9 8 7 11 11 H 1.09009 * 109.41137 * 303.56273 * 10 9 8 12 12 N 1.46505 * 109.41109 * 183.70922 * 10 9 8 13 13 C 1.34777 * 119.99722 * 155.00272 * 12 10 9 14 14 O 1.21513 * 120.00316 * 359.97438 * 13 12 10 15 15 O 1.34638 * 119.99672 * 179.72257 * 13 12 10 16 16 C 1.45202 * 116.99776 * 180.27362 * 15 13 12 17 17 C 1.52996 * 109.46987 * 269.99505 * 16 15 13 18 18 C 1.53004 * 109.47191 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46568 * 60.00255 * 18 17 16 20 20 C 1.52996 * 109.47156 * 299.99766 * 19 18 17 21 21 C 1.53004 * 109.47191 * 60.00615 * 20 19 18 22 22 C 1.52950 * 109.81936 * 63.59867 * 10 9 8 23 23 C 1.51273 * 120.84919 * 179.97438 * 7 2 1 24 24 H 0.96991 * 119.99978 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62609 * 111.60628 * 8 7 2 26 26 H 1.09005 * 109.78057 * 351.12901 * 8 7 2 27 27 H 1.09009 * 109.47922 * 185.39115 * 9 8 7 28 28 H 1.09001 * 109.49374 * 65.35800 * 9 8 7 29 29 H 0.97000 * 119.99795 * 334.99389 * 12 10 9 30 30 H 1.08994 * 109.47065 * 29.99981 * 16 15 13 31 31 H 1.09003 * 109.47344 * 300.00151 * 17 16 15 32 32 H 1.09005 * 109.47115 * 60.00375 * 17 16 15 33 33 H 1.08994 * 109.46964 * 300.00539 * 18 17 16 34 34 H 1.08998 * 109.47347 * 179.97438 * 18 17 16 35 35 H 1.09005 * 109.46581 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47246 * 60.00457 * 19 18 17 37 37 H 1.09003 * 109.47344 * 300.00464 * 20 19 18 38 38 H 1.09005 * 109.47115 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.46929 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.46964 * 59.99461 * 21 20 19 41 41 H 1.09000 * 109.48282 * 56.38119 * 22 10 9 42 42 H 1.09003 * 109.48704 * 176.41981 * 22 10 9 43 43 H 1.08999 * 109.62814 * 248.39088 * 23 7 2 44 44 H 1.08994 * 109.62523 * 8.96512 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3400 -3.5069 0.9840 11 1 3.5740 -3.9111 -0.0010 12 7 3.8599 -4.4075 2.0159 13 6 5.0175 -5.0675 1.8134 14 8 5.6297 -4.9159 0.7747 15 8 5.4982 -5.8908 2.7641 16 6 6.7530 -6.5640 2.4802 17 6 6.4702 -7.9013 1.7929 18 6 7.7925 -8.6104 1.4931 19 6 8.5460 -8.8586 2.8014 20 6 8.8288 -7.5212 3.4887 21 6 7.5065 -6.8122 3.7885 22 6 3.9907 -2.1310 1.1350 23 6 3.5171 -1.2165 0.0000 24 1 -0.4850 0.8400 -0.0004 25 1 1.4200 -3.0193 -0.9538 26 1 0.2029 -2.3437 0.1583 27 1 1.3707 -4.3733 1.0900 28 1 1.5900 -2.9198 2.0942 29 1 3.3711 -4.5287 2.8450 30 1 7.3599 -5.9397 1.8245 31 1 5.8632 -8.5256 2.4486 32 1 5.9337 -7.7245 0.8606 33 1 8.3990 -7.9859 0.8373 34 1 7.5910 -9.5633 1.0039 35 1 9.4882 -9.3633 2.5878 36 1 7.9394 -9.4831 3.4572 37 1 9.4354 -6.8967 2.8328 38 1 9.3660 -7.6980 4.4205 39 1 7.7080 -5.8597 4.2785 40 1 6.8999 -7.4367 4.4443 41 1 3.7064 -1.6977 2.0939 42 1 5.0749 -2.2346 1.0899 43 1 3.8772 -1.6006 -0.9544 44 1 3.8982 -0.2078 0.1591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193640415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = -123.903940 kcal Electronic energy + Delta-G solvation = -22621.859842 eV Core-core repulsion = 19344.245665 eV Total energy + Delta-G solvation = -3277.614177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.41037 -38.53215 -37.09566 -35.55448 -33.77407 -31.61661 -31.05510 -30.09603 -29.66593 -27.22424 -23.41802 -22.86063 -22.10607 -21.52499 -20.56020 -20.10247 -19.62692 -18.20923 -16.78712 -16.06564 -15.86909 -15.46797 -14.73331 -14.48787 -14.44787 -14.32277 -13.50100 -13.29621 -13.14869 -12.84748 -12.71493 -12.48550 -12.32636 -12.13278 -11.70251 -11.46734 -11.34910 -11.07855 -11.02445 -10.91843 -10.82289 -10.73478 -10.58470 -10.35136 -10.10134 -10.02355 -9.96525 -9.55741 -9.04811 -8.90451 -8.50889 -8.34656 -6.11607 -4.02622 2.45698 3.18837 3.27924 3.36045 3.37338 4.34374 4.37954 4.45784 4.46669 4.72681 4.93743 4.97447 5.13801 5.17332 5.19325 5.21707 5.36114 5.52716 5.64151 5.74242 5.76542 5.81426 5.85961 5.86268 5.94041 6.05602 6.10985 6.16632 6.42069 6.46660 6.58913 6.69794 6.80373 6.88261 6.94379 7.09563 7.21518 7.42712 7.63281 7.69475 7.75140 7.90358 8.36310 8.72248 8.94410 9.53185 10.97847 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039676 B = 0.003311 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.549162 B = 8455.591809 C = 8733.237406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.489 4.489 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.170 3.830 11 H 0.080 0.920 12 N -0.703 5.703 13 C 0.641 3.359 14 O -0.575 6.575 15 O -0.373 6.373 16 C 0.109 3.891 17 C -0.136 4.136 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.018 4.018 24 H 0.264 0.736 25 H 0.007 0.993 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.400 0.600 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.020 0.980 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.286 -14.956 7.794 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.508 4.508 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.068 3.932 11 H 0.099 0.901 12 N -0.360 5.360 13 C 0.393 3.607 14 O -0.464 6.464 15 O -0.288 6.288 16 C 0.053 3.947 17 C -0.174 4.174 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.056 4.056 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.469 -14.804 7.283 21.298 hybrid contribution 0.199 0.881 0.385 0.982 sum 13.668 -13.923 7.668 20.964 Atomic orbital electron populations 1.69831 1.06136 1.26979 1.49861 1.24842 0.94721 0.98598 0.94465 0.86673 0.80001 0.83206 0.78573 1.20362 1.21661 1.18920 1.20057 0.89397 0.91467 1.49870 1.19343 0.98736 0.92736 0.91593 1.21970 0.91829 0.98862 1.02609 1.21134 0.94410 0.88256 0.89355 0.90147 1.45340 1.21534 1.46317 1.22770 1.18284 0.82315 0.78083 0.81997 1.90961 1.59683 1.68363 1.27429 1.86277 1.40497 1.56797 1.45228 1.22591 0.82071 0.92539 0.97488 1.21954 0.98314 0.95795 1.01344 1.21488 0.95796 1.00528 0.97533 1.21602 1.00332 0.97219 0.96898 1.21506 0.96323 0.96502 1.01006 1.21620 0.96004 1.01587 0.96178 1.21949 0.97363 0.95058 1.01047 1.19802 0.96567 0.95498 0.93782 0.92567 0.97461 0.91944 0.94371 0.92466 0.76654 0.89597 0.91163 0.91064 0.91545 0.91409 0.91717 0.91732 0.91552 0.91140 0.91024 0.90846 0.92883 0.94417 0.96174 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 12.74 55.43 0.71 -24.59 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.02 27.53 -169.99 -4.68 16.34 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.08 6.10 56.52 0.35 -5.73 16 7 C -0.49 -12.77 5.51 -98.92 -0.55 -13.31 16 8 C 0.01 0.34 5.96 -27.48 -0.16 0.17 16 9 C -0.11 -2.32 5.40 -26.63 -0.14 -2.47 16 10 C 0.17 3.38 2.35 -67.98 -0.16 3.22 16 11 H 0.08 1.75 7.58 -51.92 -0.39 1.36 16 12 N -0.70 -12.01 5.08 -58.77 -0.30 -12.31 16 13 C 0.64 11.43 8.68 54.06 0.47 11.90 16 14 O -0.58 -11.94 15.26 -19.28 -0.29 -12.23 16 15 O -0.37 -5.63 9.93 -40.32 -0.40 -6.03 16 16 C 0.11 1.36 2.46 -26.73 -0.07 1.30 16 17 C -0.14 -1.51 5.56 -26.73 -0.15 -1.66 16 18 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 19 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 20 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 21 C -0.12 -1.11 5.59 -26.73 -0.15 -1.25 16 22 C -0.12 -2.46 5.50 -26.62 -0.15 -2.60 16 23 C -0.02 -0.44 5.60 -27.46 -0.15 -0.59 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 27 H 0.04 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.40 5.80 8.71 -40.82 -0.36 5.44 16 30 H 0.09 1.21 7.16 -51.93 -0.37 0.84 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.87 4.59 -51.93 -0.24 0.63 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -29.39 340.41 -9.30 -38.69 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.68 Total: 1.56 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.78 Total: -6.57 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.41 Total: -36.89 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.69 Total: -18.26 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.68 Total: 16.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.39 -9.30 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193640415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.213 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds