Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48498 * 109.47324 * 270.00109 * 3 2 1 5 5 H 1.48509 * 109.46890 * 29.99901 * 3 2 1 6 6 H 1.48498 * 109.47285 * 149.99473 * 3 2 1 7 7 C 1.37874 * 119.99982 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.85269 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53453 * 231.32254 * 8 7 2 10 10 C 1.52956 * 109.40545 * 305.37065 * 9 8 7 11 11 H 1.09009 * 109.41137 * 303.56273 * 10 9 8 12 12 N 1.46505 * 109.41109 * 183.70922 * 10 9 8 13 13 C 1.34777 * 119.99722 * 155.00272 * 12 10 9 14 14 O 1.21513 * 120.00316 * 359.97438 * 13 12 10 15 15 O 1.34638 * 119.99672 * 179.72257 * 13 12 10 16 16 C 1.45202 * 116.99776 * 180.27362 * 15 13 12 17 17 C 1.52996 * 109.46987 * 269.99505 * 16 15 13 18 18 C 1.53004 * 109.47191 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46568 * 60.00255 * 18 17 16 20 20 C 1.52996 * 109.47156 * 299.99766 * 19 18 17 21 21 C 1.53004 * 109.47191 * 60.00615 * 20 19 18 22 22 C 1.52950 * 109.81936 * 63.59867 * 10 9 8 23 23 C 1.51273 * 120.84919 * 179.97438 * 7 2 1 24 24 H 0.96991 * 119.99978 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62609 * 111.60628 * 8 7 2 26 26 H 1.09005 * 109.78057 * 351.12901 * 8 7 2 27 27 H 1.09009 * 109.47922 * 185.39115 * 9 8 7 28 28 H 1.09001 * 109.49374 * 65.35800 * 9 8 7 29 29 H 0.97000 * 119.99795 * 334.99389 * 12 10 9 30 30 H 1.08994 * 109.47065 * 29.99981 * 16 15 13 31 31 H 1.09003 * 109.47344 * 300.00151 * 17 16 15 32 32 H 1.09005 * 109.47115 * 60.00375 * 17 16 15 33 33 H 1.08994 * 109.46964 * 300.00539 * 18 17 16 34 34 H 1.08998 * 109.47347 * 179.97438 * 18 17 16 35 35 H 1.09005 * 109.46581 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47246 * 60.00457 * 19 18 17 37 37 H 1.09003 * 109.47344 * 300.00464 * 20 19 18 38 38 H 1.09005 * 109.47115 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.46929 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.46964 * 59.99461 * 21 20 19 41 41 H 1.09000 * 109.48282 * 56.38119 * 22 10 9 42 42 H 1.09003 * 109.48704 * 176.41981 * 22 10 9 43 43 H 1.08999 * 109.62814 * 248.39088 * 23 7 2 44 44 H 1.08994 * 109.62523 * 8.96512 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3400 -3.5069 0.9840 11 1 3.5740 -3.9111 -0.0010 12 7 3.8599 -4.4075 2.0159 13 6 5.0175 -5.0675 1.8134 14 8 5.6297 -4.9159 0.7747 15 8 5.4982 -5.8908 2.7641 16 6 6.7530 -6.5640 2.4802 17 6 6.4702 -7.9013 1.7929 18 6 7.7925 -8.6104 1.4931 19 6 8.5460 -8.8586 2.8014 20 6 8.8288 -7.5212 3.4887 21 6 7.5065 -6.8122 3.7885 22 6 3.9907 -2.1310 1.1350 23 6 3.5171 -1.2165 0.0000 24 1 -0.4850 0.8400 -0.0004 25 1 1.4200 -3.0193 -0.9538 26 1 0.2029 -2.3437 0.1583 27 1 1.3707 -4.3733 1.0900 28 1 1.5900 -2.9198 2.0942 29 1 3.3711 -4.5287 2.8450 30 1 7.3599 -5.9397 1.8245 31 1 5.8632 -8.5256 2.4486 32 1 5.9337 -7.7245 0.8606 33 1 8.3990 -7.9859 0.8373 34 1 7.5910 -9.5633 1.0039 35 1 9.4882 -9.3633 2.5878 36 1 7.9394 -9.4831 3.4572 37 1 9.4354 -6.8967 2.8328 38 1 9.3660 -7.6980 4.4205 39 1 7.7080 -5.8597 4.2785 40 1 6.8999 -7.4367 4.4443 41 1 3.7064 -1.6977 2.0939 42 1 5.0749 -2.2346 1.0899 43 1 3.8772 -1.6006 -0.9544 44 1 3.8982 -0.2078 0.1591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193640415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = -140.748620 kcal Electronic energy + Delta-G solvation = -22622.590282 eV Core-core repulsion = 19344.245665 eV Total energy + Delta-G solvation = -3278.344617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71932 -39.69496 -38.50612 -36.87605 -35.49367 -33.45402 -31.78510 -31.53176 -30.96572 -29.01747 -24.79182 -23.68079 -23.46822 -23.26984 -21.95631 -21.35151 -20.88153 -19.63010 -18.03316 -17.95244 -17.17184 -16.60958 -16.40632 -16.06428 -15.21470 -15.21209 -15.00545 -14.69581 -14.45939 -14.29901 -13.99867 -13.96697 -13.74272 -13.45861 -13.21227 -12.81778 -12.71996 -12.59185 -12.34847 -12.11316 -12.05163 -11.92507 -11.90280 -11.70996 -11.49588 -11.41046 -11.36556 -10.92090 -10.91102 -10.72687 -10.55271 -10.02503 -8.17161 -6.11791 1.15903 1.39864 1.42870 1.50531 1.76340 2.41401 3.06334 3.22219 3.66319 3.68425 3.95055 3.98555 4.14359 4.19218 4.20703 4.27756 4.44459 4.46116 4.49778 4.62867 4.69204 4.77078 4.85572 4.88309 4.94821 5.04529 5.04874 5.07905 5.15975 5.17160 5.19893 5.22740 5.27878 5.31323 5.40679 5.50827 5.53932 5.58122 5.64978 5.75137 5.81372 6.34011 6.47781 6.93602 7.34456 7.46610 8.93289 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039676 B = 0.003311 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.549162 B = 8455.591809 C = 8733.237406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.251 1.251 7 C -0.500 4.500 8 C 0.009 3.991 9 C -0.101 4.101 10 C 0.183 3.817 11 H 0.062 0.938 12 N -0.692 5.692 13 C 0.643 3.357 14 O -0.608 6.608 15 O -0.367 6.367 16 C 0.100 3.900 17 C -0.134 4.134 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.020 4.020 24 H 0.264 0.736 25 H -0.001 1.001 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.415 0.585 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.015 0.985 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.066 -16.209 9.459 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.176 1.176 7 C -0.519 4.519 8 C -0.029 4.029 9 C -0.139 4.139 10 C 0.080 3.920 11 H 0.080 0.920 12 N -0.351 5.351 13 C 0.396 3.604 14 O -0.499 6.499 15 O -0.281 6.281 16 C 0.044 3.956 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.058 4.058 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.252 0.748 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.034 0.966 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.266 -16.083 8.982 23.925 hybrid contribution -0.338 1.184 -0.165 1.242 sum 14.928 -14.899 8.817 22.859 Atomic orbital electron populations 1.69948 1.07499 1.27557 1.51742 1.25554 0.95348 1.01621 0.94705 0.85853 0.79385 0.79762 0.78591 1.20259 1.21631 1.17567 1.20588 0.90789 0.92048 1.48519 1.19299 0.97413 0.93262 0.92879 1.21734 0.92028 0.99270 1.00871 1.20737 0.93958 0.87992 0.89317 0.92027 1.44981 1.21591 1.45719 1.22777 1.18327 0.82077 0.78097 0.81881 1.90944 1.60638 1.69426 1.28908 1.86293 1.41607 1.56173 1.44054 1.22963 0.80888 0.92472 0.99242 1.21947 0.99688 0.95435 1.00074 1.21504 0.94464 1.00549 0.98639 1.21603 1.01008 0.97201 0.95875 1.21539 0.95147 0.96379 1.02039 1.21658 0.96703 1.02076 0.94403 1.21835 0.97481 0.95286 1.00150 1.19796 0.95101 0.96276 0.94601 0.92692 0.98225 0.94486 0.92015 0.92067 0.74822 0.91633 0.90167 0.93659 0.92337 0.90217 0.90064 0.90841 0.91967 0.89042 0.91143 0.89851 0.92365 0.94191 0.96611 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.62 12.74 21.45 0.27 -53.34 16 2 C 0.03 1.44 5.46 84.65 0.46 1.90 16 3 Si 0.94 42.97 27.53 68.60 1.89 44.86 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -10.88 6.10 99.48 0.61 -10.27 16 7 C -0.50 -26.16 5.51 -16.17 -0.09 -26.25 16 8 C 0.01 0.47 5.96 30.11 0.18 0.65 16 9 C -0.10 -3.99 5.40 30.66 0.17 -3.82 16 10 C 0.18 7.09 2.35 44.96 0.11 7.20 16 11 H 0.06 2.66 7.58 -2.38 -0.02 2.65 16 12 N -0.69 -22.59 5.08 -570.25 -2.90 -25.49 16 13 C 0.64 22.37 8.68 129.79 1.13 23.50 16 14 O -0.61 -25.21 15.26 19.80 0.30 -24.91 16 15 O -0.37 -10.62 9.93 -55.47 -0.55 -11.17 16 16 C 0.10 2.39 2.46 30.59 0.08 2.47 16 17 C -0.13 -2.83 5.56 30.59 0.17 -2.66 16 18 C -0.11 -1.78 5.92 30.60 0.18 -1.60 16 19 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 20 C -0.11 -1.41 5.92 30.59 0.18 -1.23 16 21 C -0.11 -1.87 5.59 30.60 0.17 -1.70 16 22 C -0.11 -4.50 5.50 30.67 0.17 -4.33 16 23 C -0.02 -0.92 5.60 30.12 0.17 -0.75 16 24 H 0.26 14.52 8.31 -92.72 -0.77 13.75 16 25 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.04 1.99 7.08 -2.38 -0.02 1.97 16 27 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.42 11.08 8.71 -92.71 -0.81 10.27 16 30 H 0.07 1.85 7.16 -2.39 -0.02 1.84 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.04 1.76 4.59 -2.39 -0.01 1.75 16 Total: -1.00 -63.32 340.41 2.33 -60.99 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.07 Total: 16.88 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.25 Total: -7.82 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.62 Total: -78.83 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.25 Total: -36.08 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.89 Total: 44.86 kcal Total: -63.32 2.33 -60.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193640415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.761 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds