Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48499 * 109.46841 * 270.00219 * 3 2 1 5 5 H 1.48493 * 109.47271 * 30.00062 * 3 2 1 6 6 H 1.48498 * 109.47108 * 150.00586 * 3 2 1 7 7 C 1.37875 * 120.00046 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85022 * 359.97438 * 7 2 1 9 9 C 1.53226 * 108.53907 * 128.62896 * 8 7 2 10 10 C 1.52964 * 109.40352 * 54.62625 * 9 8 7 11 11 H 1.08998 * 109.41307 * 56.43507 * 10 9 8 12 12 N 1.46498 * 109.41174 * 176.29511 * 10 9 8 13 13 C 1.34777 * 119.99828 * 204.86341 * 12 10 9 14 14 O 1.21513 * 119.99898 * 0.28095 * 13 12 10 15 15 O 1.34638 * 120.00235 * 180.27525 * 13 12 10 16 16 C 1.45195 * 117.00135 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.47308 * 270.00035 * 16 15 13 18 18 C 1.53002 * 109.46981 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.46900 * 60.00564 * 18 17 16 20 20 C 1.53005 * 109.47171 * 299.99360 * 19 18 17 21 21 C 1.52996 * 109.47217 * 150.00467 * 16 15 13 22 22 C 1.52957 * 109.75939 * 296.36685 * 10 9 8 23 23 C 1.51267 * 120.84846 * 179.97438 * 7 2 1 24 24 H 0.97000 * 120.00151 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.62623 * 8.91164 * 8 7 2 26 26 H 1.09002 * 109.62199 * 248.34669 * 8 7 2 27 27 H 1.09000 * 109.48398 * 294.65288 * 9 8 7 28 28 H 1.08993 * 109.48426 * 174.60436 * 9 8 7 29 29 H 0.97001 * 120.00384 * 25.14788 * 12 10 9 30 30 H 1.09001 * 109.47597 * 30.00364 * 16 15 13 31 31 H 1.09001 * 109.47060 * 300.00657 * 17 16 15 32 32 H 1.09003 * 109.46803 * 60.00247 * 17 16 15 33 33 H 1.08994 * 109.47076 * 300.00280 * 18 17 16 34 34 H 1.08997 * 109.46428 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.46625 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47488 * 59.99968 * 19 18 17 37 37 H 1.09003 * 109.47145 * 300.00634 * 20 19 18 38 38 H 1.08998 * 109.47117 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46924 * 300.00330 * 21 16 15 40 40 H 1.09003 * 109.47299 * 59.99859 * 21 16 15 41 41 H 1.09003 * 109.48500 * 183.60858 * 22 10 9 42 42 H 1.09003 * 109.48605 * 303.65479 * 22 10 9 43 43 H 1.08996 * 109.62575 * 351.08229 * 23 7 2 44 44 H 1.09002 * 109.62590 * 111.65507 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8220 -3.3821 -1.1358 10 6 3.3392 -3.5066 -0.9859 11 1 3.5740 -3.9110 -0.0013 12 7 3.8583 -4.4067 -2.0186 13 6 5.0174 -5.0647 -1.8183 14 8 5.6292 -4.9152 -0.7791 15 8 5.4974 -5.8877 -2.7696 16 6 6.7505 -6.5638 -2.4854 17 6 7.9171 -5.7010 -2.9710 18 6 9.2375 -6.4138 -2.6720 19 6 9.2646 -7.7617 -3.3953 20 6 8.0980 -8.6245 -2.9098 21 6 6.7780 -7.9120 -3.2082 22 6 3.9885 -2.1300 -1.1381 23 6 3.5170 -1.2164 -0.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.2036 -2.3408 -0.1591 26 1 1.4207 -3.0196 0.9536 27 1 1.5884 -2.9188 -2.0944 28 1 1.3699 -4.3728 -1.0907 29 1 3.3700 -4.5260 -2.8482 30 1 6.8407 -6.7256 -1.4112 31 1 7.8269 -5.5393 -4.0451 32 1 7.8976 -4.7405 -2.4560 33 1 9.3279 -6.5759 -1.5980 34 1 10.0686 -5.7989 -3.0175 35 1 10.2055 -8.2693 -3.1827 36 1 9.1742 -7.5996 -4.4694 37 1 8.1884 -8.7866 -1.8357 38 1 8.1175 -9.5850 -3.4248 39 1 5.9469 -8.5266 -2.8624 40 1 6.6879 -7.7503 -4.2824 41 1 5.0728 -2.2327 -1.0945 42 1 3.7024 -1.6970 -2.0966 43 1 3.8980 -0.2077 -0.1602 44 1 3.8779 -1.6009 0.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193640422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = -124.505708 kcal Electronic energy + Delta-G solvation = -22644.438047 eV Core-core repulsion = 19366.797776 eV Total energy + Delta-G solvation = -3277.640271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41203 -38.53333 -37.09956 -35.55652 -33.77704 -31.61990 -31.05511 -30.09309 -29.66831 -27.22628 -23.42675 -22.85143 -22.10297 -21.52944 -20.56585 -20.09685 -19.62879 -18.21283 -16.79148 -16.10256 -15.86130 -15.39025 -14.78139 -14.47984 -14.44294 -14.32675 -13.53087 -13.23047 -13.09433 -12.95754 -12.67814 -12.48390 -12.29825 -12.09134 -11.73937 -11.47095 -11.35585 -11.09266 -11.02050 -10.91794 -10.82012 -10.72623 -10.58174 -10.34718 -10.10943 -10.01788 -9.94821 -9.64521 -9.05767 -8.90862 -8.48356 -8.37398 -6.12065 -4.02815 2.45532 3.18627 3.27116 3.35994 3.38698 4.34364 4.37994 4.45965 4.46910 4.72923 4.94033 4.97510 5.14003 5.17427 5.19551 5.22065 5.36190 5.52852 5.64094 5.74059 5.76476 5.81895 5.85274 5.86461 5.94522 6.06284 6.11677 6.16329 6.41613 6.46167 6.58681 6.69294 6.80047 6.87601 6.93898 7.07727 7.20504 7.42627 7.63049 7.69571 7.74821 7.90070 8.36032 8.72073 8.94296 9.53086 10.97437 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037237 B = 0.003408 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.767646 B = 8214.343358 C = 8715.534748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.490 4.490 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.170 3.830 11 H 0.081 0.919 12 N -0.703 5.703 13 C 0.641 3.359 14 O -0.575 6.575 15 O -0.373 6.373 16 C 0.109 3.891 17 C -0.137 4.137 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.013 4.013 24 H 0.265 0.735 25 H 0.062 0.938 26 H 0.007 0.993 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.400 0.600 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.032 0.968 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.725 -14.274 -8.182 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.509 4.509 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.068 3.932 11 H 0.099 0.901 12 N -0.360 5.360 13 C 0.393 3.607 14 O -0.464 6.464 15 O -0.288 6.288 16 C 0.053 3.947 17 C -0.174 4.174 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.051 4.051 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.234 0.766 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.908 -14.126 -7.668 21.255 hybrid contribution 0.243 0.950 -0.442 1.076 sum 14.151 -13.176 -8.110 20.967 Atomic orbital electron populations 1.69830 1.06151 1.26997 1.49765 1.24838 0.94716 0.98598 0.94458 0.86654 0.80020 0.83224 0.78458 1.20415 1.21632 1.19136 1.20054 0.89377 0.91487 1.50023 1.19345 0.98774 0.92722 0.91592 1.21970 0.91816 0.98875 1.02617 1.21131 0.94435 0.88234 0.89354 0.90114 1.45336 1.21427 1.46466 1.22729 1.18285 0.82149 0.78388 0.81853 1.90961 1.59980 1.67925 1.27566 1.86276 1.40333 1.56969 1.45223 1.22590 0.79866 0.91037 1.01176 1.21957 0.93911 0.99482 1.02097 1.21484 0.96711 0.96143 1.01002 1.21601 0.98260 0.95795 1.00398 1.21494 0.93585 0.98435 1.01803 1.21610 0.98329 0.94085 1.01351 1.21977 0.97398 0.95139 1.01018 1.19727 0.96557 0.95013 0.93782 0.92554 0.91903 0.97430 0.92466 0.94350 0.76649 0.89605 0.91166 0.91024 0.91557 0.91409 0.91718 0.91736 0.91562 0.91140 0.91039 0.90845 0.94402 0.92848 0.94985 0.96123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 12.73 55.43 0.71 -24.56 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.11 27.27 -169.99 -4.64 16.47 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.20 6.46 56.52 0.37 -5.83 16 7 C -0.49 -12.81 5.51 -98.92 -0.55 -13.35 16 8 C 0.01 0.33 5.97 -27.49 -0.16 0.17 16 9 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 10 C 0.17 3.38 2.35 -67.97 -0.16 3.22 16 11 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 12 N -0.70 -11.98 5.08 -58.77 -0.30 -12.28 16 13 C 0.64 11.41 8.68 54.06 0.47 11.87 16 14 O -0.58 -11.92 15.26 -19.28 -0.29 -12.21 16 15 O -0.37 -5.62 9.93 -40.32 -0.40 -6.02 16 16 C 0.11 1.36 2.46 -26.73 -0.07 1.30 16 17 C -0.14 -1.54 5.56 -26.73 -0.15 -1.69 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 20 C -0.12 -0.87 5.92 -26.76 -0.16 -1.02 16 21 C -0.12 -1.09 5.58 -26.76 -0.15 -1.24 16 22 C -0.12 -2.47 5.50 -26.61 -0.15 -2.62 16 23 C -0.01 -0.30 5.60 -27.46 -0.15 -0.45 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.40 5.78 8.71 -40.82 -0.36 5.43 16 30 H 0.09 1.20 7.16 -51.93 -0.37 0.83 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -29.38 340.67 -9.24 -38.62 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.67 Total: 1.39 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.78 Total: -6.54 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.41 Total: -36.84 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.69 Total: -18.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.64 Total: 16.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.38 -9.24 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193640422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.881 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds