Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47320 * 300.00075 * 3 2 1 6 6 H 1.48506 * 109.47244 * 60.00227 * 3 2 1 7 7 C 1.37870 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.16536 * 180.02562 * 9 7 2 11 11 N 1.47486 * 87.93048 * 220.14056 * 10 9 7 12 12 C 1.46898 * 110.99952 * 138.70741 * 11 10 9 13 13 C 1.53003 * 109.47049 * 170.00069 * 12 11 10 14 14 H 1.09001 * 110.86289 * 56.18727 * 13 12 11 15 15 C 1.54917 * 110.97753 * 179.97438 * 13 12 11 16 16 O 1.44210 * 103.08252 * 153.63884 * 15 13 12 17 17 C 1.43313 * 107.26050 * 338.58898 * 16 15 13 18 18 C 1.52956 * 109.64063 * 239.62119 * 17 16 15 19 19 C 1.53014 * 109.45665 * 299.10482 * 18 17 16 20 20 C 1.52997 * 109.46821 * 300.23019 * 19 18 17 21 21 C 1.53001 * 109.49728 * 60.16757 * 20 19 18 22 22 C 1.52948 * 109.62997 * 118.97700 * 17 16 15 23 23 O 1.43694 * 108.85514 * 359.31339 * 17 16 15 24 24 C 1.47480 * 87.83684 * 27.00978 * 11 10 9 25 25 H 0.96998 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08994 * 113.25821 * 312.95046 * 9 7 2 27 27 H 1.09005 * 113.47774 * 105.37505 * 10 9 7 28 28 H 1.08996 * 113.47878 * 334.90224 * 10 9 7 29 29 H 1.09001 * 109.47059 * 289.99916 * 12 11 10 30 30 H 1.09005 * 109.47423 * 49.99805 * 12 11 10 31 31 H 1.09000 * 110.69754 * 272.03978 * 15 13 12 32 32 H 1.09008 * 110.69621 * 35.24232 * 15 13 12 33 33 H 1.08995 * 109.47157 * 59.10056 * 18 17 16 34 34 H 1.08997 * 109.47329 * 179.11020 * 18 17 16 35 35 H 1.08996 * 109.47207 * 180.23068 * 19 18 17 36 36 H 1.08995 * 109.47389 * 60.22440 * 19 18 17 37 37 H 1.08997 * 109.47105 * 300.15725 * 20 19 18 38 38 H 1.09002 * 109.46700 * 180.17183 * 20 19 18 39 39 H 1.08996 * 109.47395 * 179.82645 * 21 20 19 40 40 H 1.09001 * 109.47129 * 59.82303 * 21 20 19 41 41 H 1.09005 * 109.47909 * 180.88523 * 22 17 16 42 42 H 1.08999 * 109.47799 * 300.89539 * 22 17 16 43 43 H 1.09005 * 113.47310 * 87.75367 * 24 11 10 44 44 H 1.08990 * 113.48150 * 218.22188 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1498 -3.7437 -0.0005 11 7 1.2051 -4.3601 -0.9507 12 6 1.9207 -5.0901 -2.0057 13 6 0.9235 -5.9162 -2.8206 14 1 0.1366 -5.2822 -3.2292 15 6 1.6426 -6.7014 -3.9459 16 8 0.7733 -7.8314 -4.1623 17 6 -0.0159 -7.9940 -2.9772 18 6 0.2312 -9.3808 -2.3811 19 6 -0.1801 -10.4515 -3.3939 20 6 -1.6642 -10.2924 -3.7298 21 6 -1.9059 -8.9067 -4.3318 22 6 -1.4977 -7.8333 -3.3205 23 8 0.3655 -6.9888 -2.0238 24 6 0.8518 -2.9993 -1.3959 25 1 -0.4850 0.8400 0.0004 26 1 0.4453 -2.5308 0.7327 27 1 2.1891 -4.2510 0.9635 28 1 3.1380 -3.5657 -0.4246 29 1 2.4252 -4.3799 -2.6608 30 1 2.6577 -5.7535 -1.5528 31 1 1.7199 -6.0963 -4.8492 32 1 2.6281 -7.0311 -3.6164 33 1 1.2895 -9.4914 -2.1450 34 1 -0.3581 -9.4956 -1.4715 35 1 -0.0079 -11.4399 -2.9679 36 1 0.4119 -10.3391 -4.3022 37 1 -2.2562 -10.4019 -2.8211 38 1 -1.9579 -11.0570 -4.4490 39 1 -2.9627 -8.7949 -4.5737 40 1 -1.3117 -8.7959 -5.2389 41 1 -2.0945 -7.9418 -2.4148 42 1 -1.6661 -6.8460 -3.7505 43 1 1.4938 -2.6226 -2.1923 44 1 -0.2088 -2.8755 -1.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208636498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -70.907864 kcal Electronic energy + Delta-G solvation = -22916.186671 eV Core-core repulsion = 19640.870576 eV Total energy + Delta-G solvation = -3275.316094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84932 -38.89124 -37.03188 -34.87080 -32.91483 -31.73108 -30.97438 -29.20418 -27.61350 -25.39911 -24.79899 -23.13330 -22.75327 -22.15866 -20.97398 -19.64144 -18.60995 -17.22173 -16.69672 -16.54351 -15.43860 -15.22612 -14.93766 -14.60803 -14.41653 -14.18864 -13.85383 -13.67137 -13.36834 -13.06367 -12.78983 -12.42749 -12.30911 -12.30621 -12.02746 -11.72055 -11.48087 -11.30907 -11.11915 -10.99922 -10.82166 -10.72142 -10.59057 -10.52295 -10.31173 -10.02886 -9.73709 -9.33412 -9.20073 -8.95616 -8.46238 -7.99561 -6.07312 -4.12150 3.26084 3.34594 3.37884 3.44047 3.96296 4.34072 4.42822 4.59498 4.61066 4.79869 4.93927 5.01852 5.08616 5.11318 5.22039 5.29997 5.33800 5.38143 5.44131 5.45327 5.50996 5.59442 5.75088 5.79717 5.86680 5.89558 6.00199 6.04745 6.06944 6.09594 6.14307 6.19640 6.31004 6.32810 6.43700 6.67416 6.70955 7.11554 7.13784 7.26177 7.71320 7.89217 8.05548 8.35391 8.91608 9.53105 11.02239 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040085 B = 0.003268 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.351490 B = 8565.484733 C = 8718.161906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.042 3.958 10 C -0.005 4.005 11 N -0.475 5.475 12 C 0.027 3.973 13 C 0.063 3.937 14 H 0.082 0.918 15 C 0.023 3.977 16 O -0.377 6.377 17 C 0.254 3.746 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.136 4.136 23 O -0.350 6.350 24 C 0.000 4.000 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -17.881 -8.974 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.133 4.133 11 N -0.197 5.197 12 C -0.102 4.102 13 C 0.005 3.995 14 H 0.100 0.900 15 C -0.054 4.054 16 O -0.298 6.298 17 C 0.177 3.823 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.174 4.174 23 O -0.270 6.270 24 C -0.129 4.129 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.097 -18.403 -8.706 20.388 hybrid contribution 1.106 1.599 -0.509 2.010 sum 0.009 -16.804 -9.215 19.165 Atomic orbital electron populations 1.69985 1.05989 1.26650 1.49654 1.25029 0.94827 0.99191 0.94610 0.86561 0.80156 0.83760 0.77665 1.19726 1.20995 1.20886 1.21075 0.92772 0.90253 1.51364 0.92372 1.20083 0.94297 0.90787 0.92500 1.24005 0.95634 0.97649 0.96039 1.68900 1.27078 1.13862 1.09867 1.22614 0.94823 0.97413 0.95340 1.23850 0.95748 0.89748 0.90139 0.89995 1.24223 0.94513 0.87184 0.99472 1.88828 1.53470 1.49839 1.37691 1.23267 0.90696 0.89930 0.78385 1.21775 1.02542 0.92355 0.98929 1.21444 0.96399 0.97753 0.99446 1.21569 0.96466 0.97050 1.00778 1.21444 1.00987 0.93982 0.98709 1.22106 0.94810 0.99993 1.00485 1.89387 1.81033 1.27372 1.29208 1.24172 1.00257 0.86955 1.01470 0.92902 0.91760 0.91908 0.92851 0.92394 0.90944 0.88525 0.90819 0.91094 0.90339 0.91773 0.91183 0.91978 0.91962 0.91874 0.91242 0.90214 0.91281 0.92886 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.26 55.43 0.74 -24.72 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.96 8.83 -34.44 -0.30 -14.26 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 10 C 0.00 -0.10 7.25 -7.53 -0.05 -0.15 16 11 N -0.47 -9.71 6.33 -244.60 -1.55 -11.26 16 12 C 0.03 0.45 4.58 -3.82 -0.02 0.44 16 13 C 0.06 0.96 3.74 -25.72 -0.10 0.86 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.02 0.29 7.54 38.17 0.29 0.58 16 16 O -0.38 -5.07 9.62 -59.04 -0.57 -5.64 16 17 C 0.25 3.44 1.02 -26.78 -0.03 3.41 16 18 C -0.12 -1.38 5.33 -26.75 -0.14 -1.52 16 19 C -0.11 -1.09 5.79 -26.73 -0.15 -1.24 16 20 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 21 C -0.11 -1.15 5.79 -26.72 -0.15 -1.31 16 22 C -0.14 -1.68 5.28 -26.75 -0.14 -1.82 16 23 O -0.35 -5.76 10.71 -59.04 -0.63 -6.39 16 24 C 0.00 0.01 7.28 -7.54 -0.05 -0.05 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 29 H 0.06 0.91 7.30 -51.93 -0.38 0.53 16 30 H 0.07 1.14 8.08 -51.93 -0.42 0.73 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.85 8.04 -51.92 -0.42 0.43 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.72 7.72 -51.93 -0.40 0.32 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.75 7.72 -51.93 -0.40 0.34 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -29.09 344.37 -11.15 -40.24 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.85 Total: 0.59 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.46 Total: -13.87 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.81 Total: -35.97 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.20 Total: -12.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.09 -11.15 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208636498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.667 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds