Wall clock time and date at job start Tue Mar 31 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00026 * 3 2 1 5 5 H 1.48502 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47430 * 119.99964 * 3 2 1 7 7 C 1.37875 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99906 * 359.97438 * 7 2 1 10 10 O 1.42891 * 113.38472 * 46.92053 * 9 7 2 11 11 C 1.53517 * 114.16698 * 180.02562 * 9 7 2 12 12 N 1.47486 * 87.93077 * 139.67211 * 11 9 7 13 13 C 1.46897 * 111.00028 * 221.29533 * 12 11 9 14 14 C 1.52992 * 109.47413 * 169.99558 * 13 12 11 15 15 H 1.08993 * 109.48640 * 304.98331 * 14 13 12 16 16 C 1.53049 * 109.47857 * 184.96475 * 14 13 12 17 17 C 1.53149 * 109.41592 * 180.68670 * 16 14 13 18 18 C 1.53318 * 108.97629 * 58.61481 * 17 16 14 19 19 C 1.52817 * 108.91222 * 305.12097 * 18 17 16 20 20 C 1.53385 * 113.49075 * 185.12973 * 19 18 17 21 21 C 1.53847 * 86.98478 * 89.27383 * 20 19 18 22 22 C 1.53425 * 113.43313 * 282.92580 * 19 18 17 23 23 O 1.42585 * 112.93226 * 53.94304 * 19 18 17 24 24 C 1.47486 * 87.83295 * 332.98859 * 12 11 9 25 25 H 0.96999 * 119.99980 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00134 * 313.08126 * 10 9 7 27 27 H 1.08993 * 113.48055 * 24.90672 * 11 9 7 28 28 H 1.09002 * 113.52747 * 254.44092 * 11 9 7 29 29 H 1.09008 * 109.46835 * 49.99768 * 13 12 11 30 30 H 1.09003 * 109.47315 * 289.99972 * 13 12 11 31 31 H 1.09005 * 109.48228 * 300.67083 * 16 14 13 32 32 H 1.09004 * 109.48215 * 60.70821 * 16 14 13 33 33 H 1.08998 * 109.55572 * 178.45934 * 17 16 14 34 34 H 1.08996 * 109.55599 * 298.76785 * 17 16 14 35 35 H 1.09002 * 109.56626 * 185.29249 * 18 17 16 36 36 H 1.08996 * 109.56967 * 64.94954 * 18 17 16 37 37 H 1.08994 * 113.63443 * 203.80112 * 20 19 18 38 38 H 1.09003 * 113.63060 * 334.75441 * 20 19 18 39 39 H 1.09002 * 113.60661 * 270.60183 * 21 20 19 40 40 H 1.09000 * 113.60576 * 139.72459 * 21 20 19 41 41 H 1.08997 * 113.63874 * 25.19030 * 22 19 18 42 42 H 1.09007 * 113.62956 * 156.07003 * 22 19 18 43 43 H 1.08998 * 113.47671 * 141.78318 * 24 12 11 44 44 H 1.09000 * 113.47496 * 272.24238 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.1914 -2.5422 -0.9581 11 6 2.1498 -3.7437 -0.0005 12 7 1.2077 -4.3583 0.9533 13 6 1.9261 -5.0862 2.0078 14 6 0.9427 -5.4949 3.1062 15 1 0.4159 -4.6125 3.4693 16 6 1.7087 -6.1433 4.2617 17 6 0.7212 -6.5673 5.3528 18 6 -0.2944 -7.5467 4.7528 19 6 -0.9494 -6.8966 3.5347 20 6 -2.0766 -7.7389 2.9243 21 6 -3.0310 -7.0126 3.8880 22 6 -2.0166 -5.8560 3.8985 23 8 -0.0016 -6.4300 2.5771 24 6 0.8556 -2.9965 1.3968 25 1 -0.4850 0.8400 0.0004 26 1 -0.3731 -1.7570 -0.9556 27 1 3.1392 -3.5649 0.4205 28 1 2.1873 -4.2534 -0.9633 29 1 2.6978 -4.4436 2.4318 30 1 2.3883 -5.9777 1.5838 31 1 2.2448 -7.0193 3.8963 32 1 2.4200 -5.4272 4.6735 33 1 1.2615 -7.0540 6.1647 34 1 0.1999 -5.6894 5.7342 35 1 -1.0571 -7.7820 5.4952 36 1 0.2155 -8.4607 4.4486 37 1 -2.2662 -7.5194 1.8737 38 1 -1.9822 -8.8061 3.1247 39 1 -3.1376 -7.5084 4.8529 40 1 -3.9884 -6.7494 3.4383 41 1 -1.8737 -5.4090 4.8822 42 1 -2.1885 -5.1151 3.1175 43 1 -0.2044 -2.8724 1.6181 44 1 1.4996 -2.6184 2.1908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307709665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:10 Heat of formation + Delta-G solvation = -44.565879 kcal Electronic energy + Delta-G solvation = -23438.095484 eV Core-core repulsion = 20163.921664 eV Total energy + Delta-G solvation = -3274.173820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44789 -39.04993 -36.49986 -34.19387 -33.56089 -32.02842 -30.84795 -27.90655 -25.91376 -25.71638 -24.86432 -23.99802 -23.34451 -21.21286 -20.48219 -18.59922 -18.38941 -17.21986 -16.57297 -15.80423 -15.44293 -15.03664 -15.00293 -14.37992 -14.12143 -13.83757 -13.74773 -13.39629 -13.12276 -12.71793 -12.42785 -12.25832 -11.97253 -11.87625 -11.61104 -11.39738 -11.18268 -11.08607 -11.02195 -10.96889 -10.87539 -10.73517 -10.54386 -10.40110 -10.08770 -9.96266 -9.69427 -9.24307 -9.02196 -8.61184 -8.09827 -7.79156 -6.24368 -4.34272 3.21599 3.27154 3.29527 3.89110 4.26230 4.52169 4.61952 4.65985 4.74886 4.77784 4.95858 4.99577 5.12121 5.15192 5.25922 5.43071 5.54498 5.61407 5.69586 5.74882 5.80492 5.83910 5.88068 5.89278 5.93217 5.95800 6.03850 6.06688 6.13003 6.16160 6.30462 6.35345 6.40270 6.46670 6.51806 6.76997 7.10049 7.24854 7.39828 7.64861 7.79313 8.00585 8.12445 8.67680 9.35703 9.74094 10.81465 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.004319 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.473071 B = 6481.053381 C = 6743.122210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.569 6.569 11 C 0.001 3.999 12 N -0.458 5.458 13 C 0.026 3.974 14 C 0.102 3.898 15 H 0.058 0.942 16 C -0.151 4.151 17 C -0.119 4.119 18 C -0.124 4.124 19 C 0.089 3.911 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.161 4.161 23 O -0.342 6.342 24 C -0.021 4.021 25 H 0.272 0.728 26 H 0.389 0.611 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -12.188 10.887 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.381 6.381 11 C -0.128 4.128 12 N -0.180 5.180 13 C -0.103 4.103 14 C 0.044 3.956 15 H 0.075 0.925 16 C -0.189 4.189 17 C -0.157 4.157 18 C -0.162 4.162 19 C 0.048 3.952 20 C -0.157 4.157 21 C -0.177 4.177 22 C -0.199 4.199 23 O -0.261 6.261 24 C -0.151 4.151 25 H 0.082 0.918 26 H 0.245 0.755 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.742 -13.191 10.342 16.852 hybrid contribution 0.949 1.993 0.986 2.417 sum -0.793 -11.198 11.328 15.948 Atomic orbital electron populations 1.69294 1.06112 1.27874 1.50611 1.25058 0.94967 0.99618 0.93438 0.86468 0.79550 0.82083 0.78822 1.19925 1.21000 1.20095 1.21565 0.93623 0.90642 1.51487 0.91663 1.19330 0.85062 0.90503 0.84429 1.86039 1.45007 1.47951 1.59138 1.24081 0.95196 0.96557 0.96927 1.69018 1.26383 1.13255 1.09375 1.22666 0.94645 0.99430 0.93603 1.21966 0.89691 0.91276 0.92649 0.92453 1.22196 0.98608 1.01571 0.96565 1.21572 0.97057 0.99324 0.97744 1.21836 0.98758 0.98820 0.96748 1.22625 0.87667 0.95018 0.89841 1.22962 0.93804 0.98411 1.00532 1.22713 0.97788 0.97683 0.99528 1.23517 0.96640 0.97504 1.02240 1.88089 1.43265 1.60815 1.33928 1.24659 1.00577 0.88109 1.01714 0.91801 0.75535 0.92046 0.91139 0.93413 0.90952 0.91190 0.91069 0.91661 0.91776 0.90964 0.91103 0.88901 0.91242 0.90371 0.90967 0.91717 0.88909 0.91567 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 11.02 55.43 0.61 -23.74 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.43 8.68 -34.44 -0.30 -14.73 16 8 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.25 6.47 1.57 -91.24 -0.14 6.32 16 10 O -0.57 -15.95 13.54 -35.23 -0.48 -16.43 16 11 C 0.00 0.03 7.12 -7.54 -0.05 -0.03 16 12 N -0.46 -10.07 6.36 -244.61 -1.56 -11.62 16 13 C 0.03 0.46 4.49 -3.83 -0.02 0.44 16 14 C 0.10 1.65 2.62 -26.71 -0.07 1.58 16 15 H 0.06 1.00 7.24 -51.93 -0.38 0.63 16 16 C -0.15 -1.91 5.36 -26.63 -0.14 -2.05 16 17 C -0.12 -1.30 5.95 -26.49 -0.16 -1.46 16 18 C -0.12 -1.36 5.18 -26.66 -0.14 -1.50 16 19 C 0.09 1.19 1.16 -90.29 -0.10 1.09 16 20 C -0.12 -1.44 7.50 -26.09 -0.20 -1.64 16 21 C -0.14 -1.49 7.73 -25.85 -0.20 -1.69 16 22 C -0.16 -2.11 6.90 -26.07 -0.18 -2.29 16 23 O -0.34 -5.87 10.11 -35.23 -0.36 -6.23 16 24 C -0.02 -0.50 6.35 -7.54 -0.05 -0.55 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.39 11.01 6.33 45.56 0.29 11.30 16 27 H 0.06 1.29 7.72 -51.93 -0.40 0.89 16 28 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.05 0.82 7.56 -51.92 -0.39 0.42 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.71 7.61 -51.93 -0.40 0.31 16 35 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.08 0.70 7.61 -51.93 -0.40 0.31 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 42 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 43 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.05 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -28.73 340.13 -10.55 -39.29 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.03 Total: 12.92 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -1.85 Total: -14.72 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.95 Total: -35.36 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.83 Total: -22.66 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.73 -10.55 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307709665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.277 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds