Wall clock time and date at job start Tue Mar 31 2020 07:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46939 * 2 1 4 4 C 1.50695 * 109.47077 * 180.02562 * 3 2 1 5 5 C 1.32998 * 120.00381 * 83.00918 * 4 3 2 6 6 C 1.47109 * 119.99603 * 353.21976 * 5 4 3 7 7 O 1.21609 * 119.99670 * 2.89437 * 6 5 4 8 8 N 1.34773 * 119.99698 * 182.89813 * 6 5 4 9 9 C 1.47581 * 134.49103 * 180.02562 * 8 6 5 10 10 C 1.53945 * 86.11905 * 155.35395 * 9 8 6 11 11 O 1.42899 * 113.73976 * 269.15538 * 10 9 8 12 12 C 1.50703 * 113.74441 * 137.94831 * 10 9 8 13 13 H 1.07999 * 119.99303 * 4.45272 * 12 10 9 14 14 C 1.37871 * 120.00165 * 184.44924 * 12 10 9 15 15 N 1.31509 * 120.00072 * 185.25930 * 14 12 10 16 16 Si 1.86806 * 119.99988 * 5.25911 * 14 12 10 17 17 H 1.48502 * 109.46817 * 270.00099 * 16 14 12 18 18 H 1.48495 * 109.46789 * 30.00071 * 16 14 12 19 19 H 1.48496 * 109.46782 * 150.00243 * 16 14 12 20 20 C 1.47581 * 134.49505 * 359.97438 * 8 6 5 21 21 C 1.50703 * 120.00019 * 263.00817 * 4 3 2 22 22 C 1.52999 * 109.46833 * 275.00169 * 21 4 3 23 23 C 1.53005 * 109.46672 * 179.97438 * 22 21 4 24 24 H 1.08999 * 109.47680 * 299.99951 * 1 2 3 25 25 H 1.09006 * 109.47186 * 60.00400 * 1 2 3 26 26 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47172 * 239.99921 * 2 1 3 28 28 H 1.08998 * 109.47163 * 119.99273 * 2 1 3 29 29 H 1.08999 * 109.46895 * 59.99568 * 3 2 1 30 30 H 1.08998 * 109.46600 * 299.99618 * 3 2 1 31 31 H 1.07996 * 120.00409 * 173.22610 * 5 4 3 32 32 H 1.08991 * 113.76896 * 41.04984 * 9 8 6 33 33 H 1.09001 * 113.86592 * 269.66547 * 9 8 6 34 34 H 0.96705 * 113.99749 * 172.67443 * 11 10 9 35 35 H 0.96997 * 119.99897 * 354.96935 * 15 14 12 36 36 H 1.09000 * 113.76682 * 90.34355 * 20 8 6 37 37 H 1.09003 * 113.77202 * 318.95120 * 20 8 6 38 38 H 1.09000 * 109.46821 * 34.99871 * 21 4 3 39 39 H 1.08994 * 109.47159 * 155.00031 * 21 4 3 40 40 H 1.09000 * 109.47173 * 299.99486 * 22 21 4 41 41 H 1.08994 * 109.47361 * 59.99986 * 22 21 4 42 42 H 1.09000 * 109.47275 * 60.00394 * 23 22 21 43 43 H 1.09006 * 109.47139 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47618 * 299.99823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2115 1.3026 -1.1441 6 6 3.4831 0.9990 -2.3857 7 8 2.2691 0.9280 -2.3765 8 7 4.1613 0.7994 -3.5331 9 6 3.7740 0.4857 -4.9222 10 6 5.1087 1.1354 -5.3303 11 8 5.0090 2.5356 -5.5977 12 6 5.8457 0.3824 -6.4078 13 1 5.3926 -0.4833 -6.8679 14 6 7.0982 0.7987 -6.8063 15 7 7.6976 0.2065 -7.8160 16 14 7.9437 2.2041 -5.9121 17 1 7.5824 3.4910 -6.5591 18 1 7.5053 2.2230 -4.4934 19 1 9.4153 2.0153 -5.9731 20 6 5.5894 0.8075 -3.9053 21 6 4.3009 1.6013 1.2945 22 6 4.4471 3.0890 1.6205 23 6 5.2121 3.2501 2.9357 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 5.2858 1.4117 -1.1612 32 1 2.8961 1.0316 -5.2674 33 1 3.7219 -0.5820 -5.1352 34 1 5.8607 2.9695 -5.7447 35 1 7.2919 -0.5693 -8.2335 36 1 6.0718 -0.1659 -3.8175 37 1 6.1605 1.6103 -3.4388 38 1 3.7539 1.1057 2.0965 39 1 5.2891 1.1519 1.1970 40 1 4.9942 3.5846 0.8185 41 1 3.4589 3.5384 1.7180 42 1 6.2004 2.8006 2.8386 43 1 5.3167 4.3100 3.1678 44 1 4.6648 2.7545 3.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321050249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:06 Heat of formation + Delta-G solvation = -47.073833 kcal Electronic energy + Delta-G solvation = -22698.769111 eV Core-core repulsion = 19424.486538 eV Total energy + Delta-G solvation = -3274.282573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = -1.10 seconds Orbital eigenvalues (eV) -39.88565 -38.37561 -36.43912 -34.47945 -33.98788 -32.61932 -31.97218 -29.16919 -27.10192 -26.62036 -25.56127 -24.69973 -22.07772 -21.60817 -20.39700 -19.12832 -18.06562 -17.83516 -16.78289 -15.94010 -15.48695 -15.24593 -15.02280 -14.59066 -14.06417 -13.98865 -13.59401 -13.50303 -13.21576 -13.16410 -12.70255 -12.52808 -12.24957 -12.18250 -12.06827 -11.66185 -11.55703 -11.50289 -11.33012 -11.08914 -11.04069 -10.78939 -10.67755 -10.38444 -10.33395 -9.88465 -9.47972 -9.14699 -8.99877 -8.92854 -8.50986 -7.90734 -6.71623 -4.47894 1.58214 3.09423 3.12504 3.30475 3.47265 3.72714 4.16542 4.59413 4.69578 4.76382 4.88025 4.96975 5.09858 5.21183 5.23081 5.31101 5.39168 5.48204 5.56590 5.58326 5.61555 5.65632 5.74589 5.83266 5.93556 5.97064 6.02047 6.05085 6.08852 6.10984 6.19261 6.26495 6.32789 6.35072 6.53465 6.58144 6.62062 6.64284 6.84820 7.50003 8.06247 8.36472 8.47839 8.59610 8.72451 9.27750 10.64150 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.004657 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.081561 B = 6010.891744 C = 7165.137246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.091 4.091 4 C -0.041 4.041 5 C -0.209 4.209 6 C 0.557 3.443 7 O -0.552 6.552 8 N -0.630 5.630 9 C 0.128 3.872 10 C 0.196 3.804 11 O -0.555 6.555 12 C -0.610 4.610 13 H 0.071 0.929 14 C 0.035 3.965 15 N -0.892 5.892 16 Si 1.031 2.969 17 H -0.276 1.276 18 H -0.267 1.267 19 H -0.280 1.280 20 C 0.061 3.939 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.152 4.152 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.354 0.646 35 H 0.274 0.726 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 3.025 18.254 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.128 4.128 4 C -0.043 4.043 5 C -0.230 4.230 6 C 0.350 3.650 7 O -0.434 6.434 8 N -0.363 5.363 9 C 0.006 3.994 10 C 0.155 3.845 11 O -0.364 6.364 12 C -0.648 4.648 13 H 0.089 0.911 14 C -0.173 4.173 15 N -0.525 5.525 16 Si 0.859 3.141 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.206 1.206 20 C -0.062 4.062 21 C -0.126 4.126 22 C -0.157 4.157 23 C -0.209 4.209 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.204 0.796 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.711 3.824 18.466 19.438 hybrid contribution -0.495 -0.978 -0.129 1.104 sum -5.207 2.846 18.337 19.273 Atomic orbital electron populations 1.21689 0.96118 1.00965 1.01407 1.21327 0.95526 0.95961 1.01501 1.20963 0.90478 0.98358 1.02995 1.22447 0.96415 0.91637 0.93809 1.22413 1.00128 1.07909 0.92559 1.18166 0.86732 0.77570 0.82492 1.90671 1.13558 1.53867 1.85340 1.50057 1.10020 1.68107 1.08103 1.23203 0.98850 0.99781 0.77613 1.20513 0.92854 0.80152 0.90963 1.86456 1.33706 1.22759 1.93487 1.22283 1.03488 1.16053 1.22997 0.91064 1.25806 0.94631 1.01650 0.95178 1.70763 1.42383 1.20340 1.19022 0.84310 0.77547 0.75742 0.76455 1.20256 1.19262 1.20586 1.24697 0.82119 1.01627 0.97753 1.20812 0.99973 0.97260 0.94585 1.21489 1.00996 0.95381 0.97872 1.21785 1.00348 1.01583 0.97212 0.93567 0.92353 0.93349 0.90763 0.93592 0.92777 0.87972 0.86229 0.90863 0.89336 0.79576 0.91593 0.89139 0.91035 0.90620 0.90894 0.91624 0.91717 0.92647 0.92663 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 37.16 0.37 -1.40 16 2 C -0.11 -1.44 5.34 -26.73 -0.14 -1.58 16 3 C -0.09 -1.24 4.64 -27.88 -0.13 -1.37 16 4 C -0.04 -0.55 4.62 -101.17 -0.47 -1.01 16 5 C -0.21 -3.27 9.39 -37.80 -0.35 -3.63 16 6 C 0.56 10.75 7.70 -12.66 -0.10 10.65 16 7 O -0.55 -11.37 11.89 5.27 0.06 -11.30 16 8 N -0.63 -12.81 3.61 -179.73 -0.65 -13.46 16 9 C 0.13 2.73 8.23 -2.98 -0.02 2.70 16 10 C 0.20 4.50 1.06 -90.86 -0.10 4.41 16 11 O -0.55 -13.01 13.42 -35.23 -0.47 -13.49 16 12 C -0.61 -15.85 9.04 -34.44 -0.31 -16.16 16 13 H 0.07 1.97 8.04 -52.49 -0.42 1.55 16 14 C 0.03 0.92 5.47 -17.82 -0.10 0.82 16 15 N -0.89 -25.41 13.70 55.43 0.76 -24.65 16 16 Si 1.03 22.02 24.81 -169.99 -4.22 17.80 16 17 H -0.28 -5.60 6.94 56.52 0.39 -5.21 16 18 H -0.27 -5.04 4.81 56.52 0.27 -4.77 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.06 1.23 6.60 -2.99 -0.02 1.21 16 21 C -0.09 -0.90 5.35 -27.88 -0.15 -1.05 16 22 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 23 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.22 6.23 -51.93 -0.32 0.90 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.10 1.68 5.93 -51.93 -0.31 1.38 16 31 H 0.12 1.72 7.90 -52.49 -0.41 1.31 16 32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 34 H 0.35 7.66 4.30 45.56 0.20 7.86 16 35 H 0.27 7.76 8.72 -40.82 -0.36 7.40 16 36 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 37 H 0.07 1.35 6.50 -51.93 -0.34 1.01 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -29.10 348.95 -7.80 -36.90 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.23 Total: 11.41 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.31 Total: -8.46 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.11 Total: -38.11 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.41 Total: -24.79 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.22 Total: 17.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.10 -7.80 -36.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321050249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.175 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.10 seconds