Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99913 * 2 1 4 4 H 1.48501 * 109.47212 * 240.00362 * 3 2 1 5 5 H 1.48505 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47461 * 120.00123 * 3 2 1 7 7 C 1.37876 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.44468 * 59.79250 * 9 7 2 11 11 C 1.53188 * 109.29383 * 181.23631 * 10 9 7 12 12 N 1.46924 * 108.89346 * 305.57471 * 11 10 9 13 13 C 1.34778 * 120.63036 * 233.55572 * 12 11 10 14 14 O 1.21276 * 120.00177 * 355.32040 * 13 12 11 15 15 C 1.50704 * 119.99622 * 175.31047 * 13 12 11 16 16 C 1.53002 * 109.46953 * 275.34146 * 15 13 12 17 17 C 1.52995 * 109.46789 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47760 * 59.99651 * 17 16 15 19 19 O 1.42902 * 109.46659 * 60.00057 * 18 17 16 20 20 C 1.52999 * 109.47215 * 300.00615 * 18 17 16 21 21 C 1.52995 * 109.47259 * 59.99078 * 20 18 17 22 22 C 1.46929 * 118.73549 * 53.54386 * 12 11 10 23 23 C 1.53045 * 109.45693 * 179.97438 * 9 7 2 24 24 H 0.96995 * 120.00274 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.45471 * 299.96420 * 9 7 2 26 26 H 1.08998 * 109.38851 * 61.35473 * 10 9 7 27 27 H 1.08995 * 109.61805 * 301.25546 * 10 9 7 28 28 H 1.09002 * 109.58568 * 185.71705 * 11 10 9 29 29 H 1.08995 * 109.58614 * 65.44162 * 11 10 9 30 30 H 1.08993 * 109.47063 * 35.33957 * 15 13 12 31 31 H 1.09003 * 109.46904 * 299.99707 * 16 15 13 32 32 H 1.08993 * 109.47503 * 60.00421 * 16 15 13 33 33 H 1.09005 * 109.47187 * 299.99694 * 17 16 15 34 34 H 1.09006 * 109.47440 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47824 * 180.02562 * 18 17 16 36 36 H 0.96702 * 114.00472 * 60.00151 * 19 18 17 37 37 H 1.09005 * 109.46575 * 299.99249 * 20 18 17 38 38 H 1.09001 * 109.47465 * 179.97438 * 20 18 17 39 39 H 1.09006 * 109.47440 * 180.02562 * 21 20 18 40 40 H 1.09005 * 109.47187 * 60.00546 * 21 20 18 41 41 H 1.08993 * 109.58753 * 66.17552 * 22 12 11 42 42 H 1.09003 * 109.58244 * 186.45625 * 22 12 11 43 43 H 1.08999 * 109.49930 * 58.67931 * 23 9 7 44 44 H 1.08994 * 109.52237 * 298.59328 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3678 -2.5776 -1.2472 11 6 -0.4196 -3.8915 -1.2281 12 7 0.5230 -5.0090 -1.0815 13 6 0.5131 -6.0349 -1.9555 14 8 -0.3331 -6.0844 -2.8229 15 6 1.5536 -7.1204 -1.8551 16 6 2.8192 -6.6838 -2.5958 17 6 3.8753 -7.7861 -2.4943 18 6 3.3337 -9.0711 -3.1237 19 8 3.0232 -8.8340 -4.4983 20 6 2.0680 -9.5076 -2.3831 21 6 1.0119 -8.4053 -2.4846 22 6 1.4768 -4.9866 0.0358 23 6 2.2459 -3.6621 0.0005 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5567 0.8907 26 1 0.9955 -2.5424 -2.1376 27 1 -0.3264 -1.7375 -1.2576 28 1 -0.9724 -3.9998 -2.1613 29 1 -1.1157 -3.8881 -0.3895 30 1 1.7903 -7.3008 -0.8066 31 1 2.5824 -6.5034 -3.6444 32 1 3.2050 -5.7682 -2.1476 33 1 4.1122 -7.9669 -1.4458 34 1 4.7772 -7.4749 -3.0216 35 1 4.0859 -9.8565 -3.0510 36 1 3.7807 -8.5532 -5.0299 37 1 2.3049 -9.6885 -1.3346 38 1 1.6818 -10.4229 -2.8318 39 1 0.1103 -8.7161 -1.9565 40 1 0.7751 -8.2244 -3.5331 41 1 0.9369 -5.0710 0.9789 42 1 2.1738 -5.8189 -0.0620 43 1 2.8883 -3.5914 0.8783 44 1 2.8563 -3.6193 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321052967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -113.509906 kcal Electronic energy + Delta-G solvation = -23377.802016 eV Core-core repulsion = 20100.638558 eV Total energy + Delta-G solvation = -3277.163458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26631 -38.56641 -36.76892 -34.99230 -33.51076 -31.22214 -30.88359 -30.62297 -29.49792 -26.22169 -23.81745 -22.80882 -22.77677 -21.92135 -20.23535 -19.48120 -18.12988 -17.22151 -16.68646 -16.26040 -15.99080 -15.10812 -14.91062 -14.56675 -14.49462 -13.78492 -13.43546 -13.21881 -13.00376 -12.84842 -12.71159 -12.47334 -12.27900 -12.02417 -11.91398 -11.74113 -11.37277 -11.12981 -11.10704 -10.92878 -10.69631 -10.52393 -10.38360 -10.27218 -10.07771 -9.89754 -9.56406 -9.36831 -9.03223 -8.91431 -8.37138 -7.94998 -6.02200 -4.09320 3.04231 3.29316 3.34739 3.36669 3.52770 4.10842 4.40500 4.54526 4.60658 4.74715 5.01730 5.02454 5.14326 5.26594 5.27475 5.30645 5.41277 5.51241 5.67252 5.68993 5.78092 5.84754 5.85681 5.95199 6.03638 6.14312 6.14560 6.25219 6.30630 6.42803 6.47464 6.50139 6.62523 6.87494 6.97057 7.20899 7.35150 7.52364 7.69148 7.91572 7.98515 8.07117 8.39474 8.65745 8.93838 9.55809 11.03112 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029555 B = 0.004075 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.161654 B = 6868.992579 C = 7279.376951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.601 5.601 13 C 0.514 3.486 14 O -0.554 6.554 15 C -0.105 4.105 16 C -0.104 4.104 17 C -0.149 4.149 18 C 0.104 3.896 19 O -0.561 6.561 20 C -0.111 4.111 21 C -0.097 4.097 22 C 0.104 3.896 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.374 0.626 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -16.835 -2.371 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.160 4.160 11 C -0.013 4.013 12 N -0.333 5.333 13 C 0.302 3.698 14 O -0.433 6.433 15 C -0.126 4.126 16 C -0.142 4.142 17 C -0.187 4.187 18 C 0.045 3.955 19 O -0.366 6.366 20 C -0.149 4.149 21 C -0.135 4.135 22 C -0.019 4.019 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.221 0.779 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.696 -16.885 -2.605 18.009 hybrid contribution 1.140 1.244 0.014 1.688 sum 6.837 -15.640 -2.590 17.265 Atomic orbital electron populations 1.69833 1.05868 1.26613 1.50565 1.24961 0.94849 0.99053 0.95049 0.86682 0.79630 0.83260 0.78552 1.20348 1.21296 1.20329 1.21145 0.92811 0.90611 1.50720 0.92803 1.18632 0.92576 0.91591 0.94153 1.22008 1.00014 0.94779 0.99208 1.21861 0.91569 0.86611 1.01276 1.48256 1.36015 1.21238 1.27766 1.20530 0.85415 0.82697 0.81177 1.90634 1.39225 1.77546 1.35883 1.21331 0.95171 0.94743 1.01349 1.21365 0.93141 0.98006 1.01658 1.22242 0.98400 0.96107 1.01942 1.21792 0.96551 0.95159 0.82007 1.86565 1.39291 1.90680 1.20082 1.21563 0.94866 0.98918 0.99538 1.21281 0.97076 0.92227 1.02903 1.21908 0.91588 0.99549 0.88840 1.22005 0.98926 0.94315 1.00873 0.92878 0.95536 0.94454 0.87885 0.90772 0.92498 0.89441 0.90699 0.91122 0.90861 0.91421 0.93003 0.77914 0.90764 0.91180 0.92011 0.89877 0.91999 0.91017 0.92169 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.30 55.43 0.63 -24.17 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.05 1.16 2.06 -91.71 -0.19 0.97 16 10 C -0.12 -2.83 5.16 -26.60 -0.14 -2.97 16 11 C 0.11 2.22 6.41 -3.71 -0.02 2.20 16 12 N -0.60 -10.96 2.97 -172.77 -0.51 -11.48 16 13 C 0.51 9.20 6.80 -10.98 -0.07 9.12 16 14 O -0.55 -11.85 15.52 5.56 0.09 -11.76 16 15 C -0.10 -1.40 1.69 -91.77 -0.16 -1.56 16 16 C -0.10 -1.28 4.93 -26.73 -0.13 -1.41 16 17 C -0.15 -1.34 5.63 -26.73 -0.15 -1.49 16 18 C 0.10 0.94 3.77 -26.73 -0.10 0.84 16 19 O -0.56 -5.82 11.97 -35.23 -0.42 -6.24 16 20 C -0.11 -1.08 5.66 -26.73 -0.15 -1.24 16 21 C -0.10 -1.25 4.58 -26.73 -0.12 -1.37 16 22 C 0.10 1.66 6.24 -3.71 -0.02 1.64 16 23 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 28 H 0.07 1.57 7.03 -51.93 -0.37 1.20 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.02 6.29 -51.93 -0.33 0.69 16 31 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 32 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.37 2.42 9.08 45.56 0.41 2.83 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.28 7.41 -51.93 -0.38 0.90 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.93 5.20 -51.93 -0.27 0.66 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -30.85 335.12 -8.65 -39.50 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.67 Total: 3.32 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.79 Total: -10.09 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.11 Total: -35.65 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.34 Total: -18.00 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.85 -8.65 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321052967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.009 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds