Wall clock time and date at job start Tue Mar 31 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99913 * 2 1 4 4 H 1.48501 * 109.47212 * 240.00362 * 3 2 1 5 5 H 1.48505 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47461 * 120.00123 * 3 2 1 7 7 C 1.37876 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.44468 * 59.79250 * 9 7 2 11 11 C 1.53188 * 109.29383 * 181.23631 * 10 9 7 12 12 N 1.46924 * 108.89346 * 305.57471 * 11 10 9 13 13 C 1.34778 * 120.63036 * 233.55572 * 12 11 10 14 14 O 1.21276 * 120.00177 * 355.32040 * 13 12 11 15 15 C 1.50704 * 119.99622 * 175.31047 * 13 12 11 16 16 C 1.53002 * 109.46953 * 275.34146 * 15 13 12 17 17 C 1.52995 * 109.46789 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47760 * 59.99651 * 17 16 15 19 19 O 1.42902 * 109.46659 * 60.00057 * 18 17 16 20 20 C 1.52999 * 109.47215 * 300.00615 * 18 17 16 21 21 C 1.52995 * 109.47259 * 59.99078 * 20 18 17 22 22 C 1.46929 * 118.73549 * 53.54386 * 12 11 10 23 23 C 1.53045 * 109.45693 * 179.97438 * 9 7 2 24 24 H 0.96995 * 120.00274 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.45471 * 299.96420 * 9 7 2 26 26 H 1.08998 * 109.38851 * 61.35473 * 10 9 7 27 27 H 1.08995 * 109.61805 * 301.25546 * 10 9 7 28 28 H 1.09002 * 109.58568 * 185.71705 * 11 10 9 29 29 H 1.08995 * 109.58614 * 65.44162 * 11 10 9 30 30 H 1.08993 * 109.47063 * 35.33957 * 15 13 12 31 31 H 1.09003 * 109.46904 * 299.99707 * 16 15 13 32 32 H 1.08993 * 109.47503 * 60.00421 * 16 15 13 33 33 H 1.09005 * 109.47187 * 299.99694 * 17 16 15 34 34 H 1.09006 * 109.47440 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47824 * 180.02562 * 18 17 16 36 36 H 0.96702 * 114.00472 * 60.00151 * 19 18 17 37 37 H 1.09005 * 109.46575 * 299.99249 * 20 18 17 38 38 H 1.09001 * 109.47465 * 179.97438 * 20 18 17 39 39 H 1.09006 * 109.47440 * 180.02562 * 21 20 18 40 40 H 1.09005 * 109.47187 * 60.00546 * 21 20 18 41 41 H 1.08993 * 109.58753 * 66.17552 * 22 12 11 42 42 H 1.09003 * 109.58244 * 186.45625 * 22 12 11 43 43 H 1.08999 * 109.49930 * 58.67931 * 23 9 7 44 44 H 1.08994 * 109.52237 * 298.59328 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3678 -2.5776 -1.2472 11 6 -0.4196 -3.8915 -1.2281 12 7 0.5230 -5.0090 -1.0815 13 6 0.5131 -6.0349 -1.9555 14 8 -0.3331 -6.0844 -2.8229 15 6 1.5536 -7.1204 -1.8551 16 6 2.8192 -6.6838 -2.5958 17 6 3.8753 -7.7861 -2.4943 18 6 3.3337 -9.0711 -3.1237 19 8 3.0232 -8.8340 -4.4983 20 6 2.0680 -9.5076 -2.3831 21 6 1.0119 -8.4053 -2.4846 22 6 1.4768 -4.9866 0.0358 23 6 2.2459 -3.6621 0.0005 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5567 0.8907 26 1 0.9955 -2.5424 -2.1376 27 1 -0.3264 -1.7375 -1.2576 28 1 -0.9724 -3.9998 -2.1613 29 1 -1.1157 -3.8881 -0.3895 30 1 1.7903 -7.3008 -0.8066 31 1 2.5824 -6.5034 -3.6444 32 1 3.2050 -5.7682 -2.1476 33 1 4.1122 -7.9669 -1.4458 34 1 4.7772 -7.4749 -3.0216 35 1 4.0859 -9.8565 -3.0510 36 1 3.7807 -8.5532 -5.0299 37 1 2.3049 -9.6885 -1.3346 38 1 1.6818 -10.4229 -2.8318 39 1 0.1103 -8.7161 -1.9565 40 1 0.7751 -8.2244 -3.5331 41 1 0.9369 -5.0710 0.9789 42 1 2.1738 -5.8189 -0.0620 43 1 2.8883 -3.5914 0.8783 44 1 2.8563 -3.6193 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321052967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:59 Heat of formation + Delta-G solvation = -133.712953 kcal Electronic energy + Delta-G solvation = -23378.678086 eV Core-core repulsion = 20100.638558 eV Total energy + Delta-G solvation = -3278.039527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55195 -39.59686 -38.33926 -35.93250 -35.33106 -32.94960 -32.16297 -31.66872 -30.66654 -28.03062 -25.27332 -24.31247 -23.64216 -23.37671 -21.49895 -20.70856 -19.58646 -18.62906 -18.08721 -17.50735 -17.14311 -16.52662 -16.35771 -16.10670 -15.49840 -15.11053 -14.89505 -14.62310 -14.37890 -14.24155 -13.98662 -13.89481 -13.39895 -13.12356 -13.07281 -13.02353 -12.93311 -12.77327 -12.49693 -12.27301 -12.16187 -11.96305 -11.88566 -11.51181 -11.41983 -11.15584 -10.99836 -10.85663 -10.69158 -10.45287 -10.35835 -9.54120 -8.07590 -6.21893 1.42400 1.43235 1.50465 1.63463 2.10979 2.43808 3.19113 3.41036 3.57011 3.79062 3.84126 3.99876 4.15761 4.22531 4.28371 4.31033 4.36533 4.44184 4.47871 4.50902 4.60535 4.63146 4.70810 4.82803 4.89812 4.96524 4.98286 5.09743 5.11654 5.17029 5.21722 5.27596 5.29415 5.35744 5.45692 5.50276 5.56043 5.67681 5.97359 6.10607 6.37534 6.55889 6.90037 7.01191 7.21555 7.46597 8.95730 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029555 B = 0.004075 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.161654 B = 6868.992579 C = 7279.376951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.109 4.109 11 C 0.118 3.882 12 N -0.604 5.604 13 C 0.507 3.493 14 O -0.597 6.597 15 C -0.095 4.095 16 C -0.102 4.102 17 C -0.141 4.141 18 C 0.100 3.900 19 O -0.587 6.587 20 C -0.109 4.109 21 C -0.094 4.094 22 C 0.108 3.892 23 C -0.115 4.115 24 H 0.260 0.740 25 H 0.002 0.998 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.388 0.612 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -18.719 -1.195 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.148 4.148 11 C -0.004 4.004 12 N -0.335 5.335 13 C 0.297 3.703 14 O -0.478 6.478 15 C -0.116 4.116 16 C -0.140 4.140 17 C -0.179 4.179 18 C 0.042 3.958 19 O -0.395 6.395 20 C -0.146 4.146 21 C -0.132 4.132 22 C -0.014 4.014 23 C -0.153 4.153 24 H 0.069 0.931 25 H 0.020 0.980 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.094 0.906 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.360 -18.781 -1.418 20.606 hybrid contribution 0.280 1.858 -0.394 1.919 sum 8.640 -16.923 -1.812 19.087 Atomic orbital electron populations 1.69979 1.07166 1.27122 1.51423 1.25726 0.95608 1.02335 0.94943 0.85727 0.78433 0.79390 0.78786 1.20016 1.21339 1.19344 1.21572 0.93140 0.92064 1.50254 0.92664 1.18621 0.93146 0.92855 0.92774 1.21759 0.99260 0.95248 0.98523 1.21511 0.91739 0.86468 1.00722 1.48332 1.35937 1.20567 1.28673 1.21475 0.85654 0.83189 0.79940 1.90613 1.41168 1.78569 1.37480 1.21400 0.93927 0.92914 1.03384 1.21350 0.93543 0.99351 0.99734 1.22235 0.97451 0.94513 1.03662 1.21939 0.96696 0.95944 0.81225 1.86541 1.40899 1.90890 1.21207 1.21619 0.94125 0.97399 1.01505 1.21223 0.98281 0.93240 1.00473 1.22052 0.91630 0.99284 0.88416 1.21862 0.98060 0.93924 1.01428 0.93119 0.97977 0.96121 0.91108 0.92069 0.92301 0.86328 0.93379 0.91634 0.88559 0.89905 0.90252 0.76258 0.87967 0.91076 0.92551 0.93444 0.90827 0.86712 0.90583 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.49 11.30 21.45 0.24 -52.25 16 2 C 0.01 0.68 5.30 84.65 0.45 1.13 16 3 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.53 -28.37 8.56 25.60 0.22 -28.15 16 8 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 2.13 2.06 -11.50 -0.02 2.11 16 10 C -0.11 -5.28 5.16 30.68 0.16 -5.12 16 11 C 0.12 5.01 6.41 86.36 0.55 5.56 16 12 N -0.60 -21.61 2.97 -818.91 -2.44 -24.05 16 13 C 0.51 17.93 6.80 87.66 0.60 18.52 16 14 O -0.60 -26.25 15.52 -3.02 -0.05 -26.30 16 15 C -0.10 -2.34 1.69 -11.54 -0.02 -2.36 16 16 C -0.10 -2.27 4.93 30.59 0.15 -2.12 16 17 C -0.14 -1.95 5.63 30.59 0.17 -1.77 16 18 C 0.10 1.45 3.77 30.59 0.12 1.57 16 19 O -0.59 -11.19 11.97 -148.98 -1.78 -12.97 16 20 C -0.11 -1.77 5.66 30.59 0.17 -1.59 16 21 C -0.09 -2.29 4.58 30.59 0.14 -2.15 16 22 C 0.11 3.16 6.24 86.36 0.54 3.70 16 23 C -0.11 -4.16 5.30 30.67 0.16 -4.00 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 25 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 3.88 6.03 -2.39 -0.01 3.87 16 28 H 0.06 2.72 7.03 -2.39 -0.02 2.70 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.12 2.19 6.29 -2.39 -0.02 2.17 16 31 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 32 H 0.06 1.53 7.91 -2.39 -0.02 1.51 16 33 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.39 4.36 9.08 -74.06 -0.67 3.69 16 37 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.49 7.41 -2.38 -0.02 1.47 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.11 2.41 5.20 -2.39 -0.01 2.40 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.05 335.12 1.70 -68.35 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.31 Total: 16.86 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.39 Total: -14.69 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.19 Total: -76.30 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.83 Total: -39.27 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -70.05 1.70 -68.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321052967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.358 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds