Wall clock time and date at job start Tue Mar 31 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99796 * 2 1 4 4 H 1.48501 * 109.46975 * 269.72773 * 3 2 1 5 5 H 1.48505 * 109.46921 * 29.72481 * 3 2 1 6 6 H 1.48501 * 109.46956 * 149.72645 * 3 2 1 7 7 C 1.37875 * 120.00276 * 179.72417 * 2 1 3 8 8 H 1.07997 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47013 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47137 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47283 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99868 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00062 * 179.97438 * 13 12 11 16 16 C 1.47422 * 125.65090 * 359.69245 * 15 13 12 17 17 C 1.55123 * 104.72184 * 155.81419 * 16 15 13 18 18 C 1.55154 * 101.48666 * 37.29980 * 17 16 15 19 19 O 1.42905 * 110.87429 * 82.76505 * 18 17 16 20 20 C 1.53005 * 110.72197 * 205.96481 * 18 17 16 21 21 C 1.52994 * 117.49904 * 247.53390 * 20 18 17 22 22 C 1.52995 * 117.50113 * 178.87135 * 20 18 17 23 23 C 1.47021 * 125.64636 * 180.02562 * 15 13 12 24 24 H 0.97000 * 120.00345 * 0.27316 * 1 2 3 25 25 H 1.09000 * 109.47152 * 299.99261 * 9 7 2 26 26 H 1.08995 * 109.47705 * 59.99370 * 9 7 2 27 27 H 1.09000 * 109.46638 * 299.99673 * 10 9 7 28 28 H 1.09003 * 109.47123 * 59.99554 * 10 9 7 29 29 H 1.09002 * 109.47128 * 300.00064 * 11 10 9 30 30 H 1.09003 * 109.47157 * 59.99953 * 11 10 9 31 31 H 1.09002 * 109.47198 * 300.00062 * 12 11 10 32 32 H 1.09003 * 109.47102 * 59.99961 * 12 11 10 33 33 H 1.08994 * 110.36702 * 274.75186 * 16 15 13 34 34 H 1.09007 * 110.36531 * 37.06910 * 16 15 13 35 35 H 1.09004 * 111.19881 * 279.19411 * 17 16 15 36 36 H 1.09004 * 110.93898 * 155.29383 * 17 16 15 37 37 H 0.96703 * 113.99800 * 305.69283 * 19 18 17 38 38 H 1.09001 * 115.54633 * 33.20598 * 20 18 17 39 39 H 1.08999 * 117.50205 * 0.02562 * 21 20 18 40 40 H 1.09003 * 117.49639 * 145.02056 * 21 20 18 41 41 H 1.08999 * 117.50250 * 214.98579 * 22 20 18 42 42 H 1.09005 * 117.49478 * 0.02562 * 22 20 18 43 43 H 1.09000 * 109.88281 * 300.43982 * 23 15 13 44 44 H 1.08996 * 109.88405 * 61.44881 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5023 2.0432 -1.4001 5 1 1.4435 2.6544 0.6942 6 1 3.5438 1.4420 0.7058 7 6 2.0046 -1.1940 0.0057 8 1 3.0845 -1.1939 0.0053 9 6 1.2511 -2.4990 0.0114 10 6 2.2454 -3.6620 0.0165 11 6 1.4804 -4.9870 0.0230 12 6 2.4746 -6.1498 0.0274 13 6 1.7212 -7.4550 0.0344 14 8 0.5083 -7.4550 0.0352 15 7 2.3951 -8.6221 0.0386 16 6 3.8621 -8.7673 0.0307 17 6 4.1235 -10.1636 0.6539 18 6 2.9423 -10.9863 0.0748 19 8 3.2418 -11.4484 -1.2439 20 6 2.5994 -12.1613 0.9930 21 6 2.8739 -13.5718 0.4677 22 6 1.4345 -13.0634 0.5808 23 6 1.7889 -9.9615 0.0450 24 1 -0.4850 0.8400 -0.0040 25 1 0.6242 -2.5528 0.9015 26 1 0.6247 -2.5609 -0.8784 27 1 2.8719 -3.6081 -0.8738 28 1 2.8721 -3.6003 0.9062 29 1 0.8540 -5.0406 0.9134 30 1 0.8534 -5.0489 -0.8665 31 1 3.1006 -6.0960 -0.8633 32 1 3.1019 -6.0881 0.9167 33 1 4.2417 -8.7277 -0.9902 34 1 4.3236 -7.9888 0.6383 35 1 4.0760 -10.1247 1.7422 36 1 5.0802 -10.5659 0.3208 37 1 3.5022 -10.7471 -1.8567 38 1 2.7458 -11.9835 2.0584 39 1 3.2992 -13.6628 -0.5317 40 1 3.2005 -14.3222 1.1877 41 1 0.8147 -13.4795 1.3750 42 1 0.9126 -12.8201 -0.3447 43 1 1.1639 -10.0813 0.9299 44 1 1.1888 -10.1011 -0.8541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326904513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:26 Heat of formation + Delta-G solvation = -80.312583 kcal Electronic energy + Delta-G solvation = -21726.000498 eV Core-core repulsion = 18450.276584 eV Total energy + Delta-G solvation = -3275.723914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72433 -38.93601 -36.56926 -35.29499 -34.89029 -32.63465 -31.16616 -29.96035 -28.87640 -25.91335 -24.30933 -22.73381 -22.49773 -21.97728 -20.43335 -20.01026 -19.26039 -17.59335 -16.83986 -16.48697 -16.10728 -15.79044 -15.46115 -15.16035 -14.73918 -14.42862 -14.23138 -13.44649 -13.24517 -12.98856 -12.70446 -12.65238 -12.54609 -12.09772 -11.90924 -11.77356 -11.69593 -11.60859 -11.41182 -11.04465 -10.98090 -10.56935 -10.53939 -10.50071 -10.40565 -10.11945 -9.81066 -9.61007 -9.22103 -8.97908 -8.86273 -8.30048 -5.94681 -3.97274 2.66705 2.76074 3.29779 3.34180 3.40164 3.43317 3.68764 4.04866 4.09704 4.16115 4.49071 4.55972 4.65229 4.72974 4.80941 4.88144 4.95837 5.16613 5.29807 5.32671 5.34913 5.36625 5.40559 5.45393 5.50292 5.57524 5.67965 5.79397 5.81927 5.90272 6.03947 6.13353 6.30812 6.54436 6.83784 7.01253 7.14913 7.19955 7.34033 7.74637 7.90607 8.06658 8.17155 8.48344 9.10436 9.66287 11.16633 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.050962 B = 0.002413 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.293373 B =11598.930042 C =11910.658716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.531 6.531 15 N -0.629 5.629 16 C 0.093 3.907 17 C -0.157 4.157 18 C 0.155 3.845 19 O -0.547 6.547 20 C -0.145 4.145 21 C -0.162 4.162 22 C -0.173 4.173 23 C 0.083 3.917 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.380 0.620 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.119 -27.331 0.902 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.318 3.682 14 O -0.406 6.406 15 N -0.366 5.366 16 C -0.030 4.030 17 C -0.195 4.195 18 C 0.113 3.887 19 O -0.354 6.354 20 C -0.163 4.163 21 C -0.199 4.199 22 C -0.210 4.210 23 C -0.040 4.040 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.229 0.771 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.092 -27.685 1.174 29.163 hybrid contribution 0.631 1.533 -0.209 1.671 sum 9.723 -26.152 0.965 27.917 Atomic orbital electron populations 1.69973 1.06048 1.26513 1.50919 1.25049 0.94847 0.99242 0.95483 0.86609 0.79812 0.83595 0.78046 1.20710 1.21255 1.19928 1.21275 0.92965 0.91189 1.50399 0.92761 1.19099 0.94065 0.91266 0.97333 1.21645 0.99069 0.93948 1.00047 1.21473 0.97034 0.92696 1.03007 1.21784 1.00040 0.91605 1.03832 1.20873 0.87944 0.84344 0.75065 1.90722 1.14065 1.86978 1.48861 1.48638 1.07045 1.05541 1.75360 1.22436 0.81231 0.98138 1.01189 1.23528 0.99437 0.94424 1.02135 1.21446 0.92546 0.91491 0.83206 1.86502 1.90047 1.38382 1.20442 1.22089 1.05487 0.90518 0.98223 1.22889 0.98771 0.94945 1.03268 1.22963 0.91371 1.03202 1.03430 1.22597 0.96208 0.81790 1.03375 0.93039 0.96573 0.96589 0.93477 0.93486 0.91771 0.91780 0.89203 0.89204 0.91110 0.89606 0.89279 0.88766 0.77147 0.86418 0.87605 0.89015 0.88678 0.88426 0.90415 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.13 -1.81 4.70 -27.88 -0.13 -1.94 16 13 C 0.53 7.73 7.85 -10.98 -0.09 7.65 16 14 O -0.53 -10.13 16.31 5.55 0.09 -10.04 16 15 N -0.63 -6.80 3.32 -170.39 -0.57 -7.37 16 16 C 0.09 0.65 6.42 -2.41 -0.02 0.63 16 17 C -0.16 -0.92 6.25 -24.47 -0.15 -1.07 16 18 C 0.15 1.13 1.11 -88.78 -0.10 1.03 16 19 O -0.55 -4.03 11.60 -35.23 -0.41 -4.43 16 20 C -0.14 -1.02 5.03 -90.62 -0.46 -1.47 16 21 C -0.16 -1.10 9.90 -26.70 -0.26 -1.36 16 22 C -0.17 -1.24 10.01 -26.70 -0.27 -1.51 16 23 C 0.08 0.83 6.05 -3.06 -0.02 0.81 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 33 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 34 H 0.09 0.55 7.48 -51.93 -0.39 0.16 16 35 H 0.09 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 1.88 8.53 45.56 0.39 2.27 16 38 H 0.12 0.72 7.99 -51.93 -0.41 0.30 16 39 H 0.11 0.81 7.16 -51.93 -0.37 0.44 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.85 7.82 -51.93 -0.41 0.45 16 44 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -34.57 358.17 -9.10 -43.67 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.03 Total: -2.12 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.30 Total: -15.12 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.17 Total: -34.30 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.32 Total: -14.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.57 -9.10 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326904513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.643 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds