Wall clock time and date at job start Tue Mar 31 2020 05:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99796 * 2 1 4 4 H 1.48501 * 109.46975 * 269.72773 * 3 2 1 5 5 H 1.48505 * 109.46921 * 29.72481 * 3 2 1 6 6 H 1.48501 * 109.46956 * 149.72645 * 3 2 1 7 7 C 1.37875 * 120.00276 * 179.72417 * 2 1 3 8 8 H 1.07997 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47013 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47137 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47283 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99868 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00062 * 179.97438 * 13 12 11 16 16 C 1.47422 * 125.65090 * 359.69245 * 15 13 12 17 17 C 1.55123 * 104.72184 * 155.81419 * 16 15 13 18 18 C 1.55154 * 101.48666 * 37.29980 * 17 16 15 19 19 O 1.42905 * 110.87429 * 82.76505 * 18 17 16 20 20 C 1.53005 * 110.72197 * 205.96481 * 18 17 16 21 21 C 1.52994 * 117.49904 * 247.53390 * 20 18 17 22 22 C 1.52995 * 117.50113 * 178.87135 * 20 18 17 23 23 C 1.47021 * 125.64636 * 180.02562 * 15 13 12 24 24 H 0.97000 * 120.00345 * 0.27316 * 1 2 3 25 25 H 1.09000 * 109.47152 * 299.99261 * 9 7 2 26 26 H 1.08995 * 109.47705 * 59.99370 * 9 7 2 27 27 H 1.09000 * 109.46638 * 299.99673 * 10 9 7 28 28 H 1.09003 * 109.47123 * 59.99554 * 10 9 7 29 29 H 1.09002 * 109.47128 * 300.00064 * 11 10 9 30 30 H 1.09003 * 109.47157 * 59.99953 * 11 10 9 31 31 H 1.09002 * 109.47198 * 300.00062 * 12 11 10 32 32 H 1.09003 * 109.47102 * 59.99961 * 12 11 10 33 33 H 1.08994 * 110.36702 * 274.75186 * 16 15 13 34 34 H 1.09007 * 110.36531 * 37.06910 * 16 15 13 35 35 H 1.09004 * 111.19881 * 279.19411 * 17 16 15 36 36 H 1.09004 * 110.93898 * 155.29383 * 17 16 15 37 37 H 0.96703 * 113.99800 * 305.69283 * 19 18 17 38 38 H 1.09001 * 115.54633 * 33.20598 * 20 18 17 39 39 H 1.08999 * 117.50205 * 0.02562 * 21 20 18 40 40 H 1.09003 * 117.49639 * 145.02056 * 21 20 18 41 41 H 1.08999 * 117.50250 * 214.98579 * 22 20 18 42 42 H 1.09005 * 117.49478 * 0.02562 * 22 20 18 43 43 H 1.09000 * 109.88281 * 300.43982 * 23 15 13 44 44 H 1.08996 * 109.88405 * 61.44881 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5023 2.0432 -1.4001 5 1 1.4435 2.6544 0.6942 6 1 3.5438 1.4420 0.7058 7 6 2.0046 -1.1940 0.0057 8 1 3.0845 -1.1939 0.0053 9 6 1.2511 -2.4990 0.0114 10 6 2.2454 -3.6620 0.0165 11 6 1.4804 -4.9870 0.0230 12 6 2.4746 -6.1498 0.0274 13 6 1.7212 -7.4550 0.0344 14 8 0.5083 -7.4550 0.0352 15 7 2.3951 -8.6221 0.0386 16 6 3.8621 -8.7673 0.0307 17 6 4.1235 -10.1636 0.6539 18 6 2.9423 -10.9863 0.0748 19 8 3.2418 -11.4484 -1.2439 20 6 2.5994 -12.1613 0.9930 21 6 2.8739 -13.5718 0.4677 22 6 1.4345 -13.0634 0.5808 23 6 1.7889 -9.9615 0.0450 24 1 -0.4850 0.8400 -0.0040 25 1 0.6242 -2.5528 0.9015 26 1 0.6247 -2.5609 -0.8784 27 1 2.8719 -3.6081 -0.8738 28 1 2.8721 -3.6003 0.9062 29 1 0.8540 -5.0406 0.9134 30 1 0.8534 -5.0489 -0.8665 31 1 3.1006 -6.0960 -0.8633 32 1 3.1019 -6.0881 0.9167 33 1 4.2417 -8.7277 -0.9902 34 1 4.3236 -7.9888 0.6383 35 1 4.0760 -10.1247 1.7422 36 1 5.0802 -10.5659 0.3208 37 1 3.5022 -10.7471 -1.8567 38 1 2.7458 -11.9835 2.0584 39 1 3.2992 -13.6628 -0.5317 40 1 3.2005 -14.3222 1.1877 41 1 0.8147 -13.4795 1.3750 42 1 0.9126 -12.8201 -0.3447 43 1 1.1639 -10.0813 0.9299 44 1 1.1888 -10.1011 -0.8541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326904513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:25 Heat of formation + Delta-G solvation = -103.485014 kcal Electronic energy + Delta-G solvation = -21727.005330 eV Core-core repulsion = 18450.276584 eV Total energy + Delta-G solvation = -3276.728746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52167 -39.88053 -37.28136 -36.63357 -35.93973 -34.62290 -32.15458 -31.27435 -29.82016 -27.53467 -25.47357 -23.76731 -23.18013 -23.01339 -21.74665 -21.01119 -20.21289 -18.45443 -18.38516 -17.59088 -17.30942 -16.76922 -16.53647 -16.19471 -16.03616 -15.60140 -15.23860 -14.57052 -14.49784 -13.95059 -13.83591 -13.73766 -13.50840 -13.34259 -13.22836 -13.12301 -12.81907 -12.44915 -12.35244 -12.29769 -12.17346 -12.15165 -11.96960 -11.59981 -11.39093 -11.36426 -11.18981 -11.13011 -10.84349 -10.61461 -10.55257 -9.76777 -8.18690 -6.31038 1.40433 1.42916 1.53953 1.56007 1.86439 2.41952 2.74040 3.13971 3.16730 3.44341 3.48771 3.58104 3.80113 4.00063 4.02509 4.10248 4.20944 4.23303 4.28877 4.32670 4.53495 4.64747 4.66342 4.72702 4.80031 4.83104 4.84563 4.87355 4.97961 5.02824 5.15041 5.16841 5.23076 5.25579 5.33454 5.35991 5.36903 5.56095 5.77259 5.87629 6.24843 6.39135 6.70711 6.87522 7.09720 7.38627 8.93610 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.050962 B = 0.002413 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.293373 B =11598.930042 C =11910.658716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.120 4.120 13 C 0.522 3.478 14 O -0.591 6.591 15 N -0.621 5.621 16 C 0.084 3.916 17 C -0.146 4.146 18 C 0.162 3.838 19 O -0.555 6.555 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.185 4.185 23 C 0.081 3.919 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.391 0.609 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.804 -27.833 1.181 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.159 4.159 13 C 0.313 3.687 14 O -0.471 6.471 15 N -0.355 5.355 16 C -0.037 4.037 17 C -0.184 4.184 18 C 0.121 3.879 19 O -0.363 6.363 20 C -0.167 4.167 21 C -0.190 4.190 22 C -0.222 4.222 23 C -0.042 4.042 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.241 0.759 38 H 0.148 0.852 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.844 -28.228 1.445 31.046 hybrid contribution -0.565 1.621 -0.321 1.746 sum 12.279 -26.607 1.124 29.326 Atomic orbital electron populations 1.70136 1.08111 1.27754 1.51912 1.26121 0.95799 1.03832 0.94821 0.85366 0.78667 0.77962 0.78539 1.19687 1.21022 1.18211 1.21747 0.93776 0.92129 1.50170 0.91439 1.19067 0.94723 0.93893 0.94271 1.21434 0.97771 0.92476 1.01440 1.21262 0.97513 0.93775 1.00943 1.21646 0.98819 0.88900 1.06570 1.21030 0.87287 0.85700 0.74701 1.90701 1.16562 1.87892 1.51985 1.48615 1.09042 1.04707 1.73168 1.22823 0.78359 0.99368 1.03145 1.23515 0.99414 0.93101 1.02341 1.21363 0.92057 0.90960 0.83540 1.86499 1.89981 1.39099 1.20721 1.22225 1.05136 0.90533 0.98830 1.22894 0.97918 0.95059 1.03175 1.22979 0.91886 1.04104 1.03185 1.22661 0.97321 0.82397 1.01819 0.92871 0.99777 0.99802 0.91901 0.91924 0.93992 0.94005 0.86310 0.86334 0.88808 0.88076 0.88762 0.86609 0.75934 0.85225 0.88465 0.87495 0.87865 0.89911 0.91875 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.29 21.45 0.28 -59.17 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.09 -3.83 5.15 30.60 0.16 -3.67 16 11 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 12 C -0.12 -3.03 4.70 29.85 0.14 -2.89 16 13 C 0.52 15.07 7.85 87.66 0.69 15.76 16 14 O -0.59 -23.57 16.31 -3.04 -0.05 -23.62 16 15 N -0.62 -12.55 3.32 -811.37 -2.70 -15.24 16 16 C 0.08 0.87 6.42 86.93 0.56 1.42 16 17 C -0.15 -1.19 6.25 32.06 0.20 -0.99 16 18 C 0.16 2.08 1.11 -9.60 -0.01 2.07 16 19 O -0.56 -7.17 11.60 -148.98 -1.73 -8.90 16 20 C -0.15 -1.85 5.03 -10.80 -0.05 -1.91 16 21 C -0.15 -1.83 9.90 30.62 0.30 -1.53 16 22 C -0.18 -2.57 10.01 30.62 0.31 -2.26 16 23 C 0.08 1.61 6.05 86.73 0.52 2.13 16 24 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.12 2.35 7.85 -2.39 -0.02 2.33 16 33 H 0.09 0.61 7.91 -2.39 -0.02 0.59 16 34 H 0.10 0.81 7.48 -2.38 -0.02 0.79 16 35 H 0.09 0.73 7.94 -2.38 -0.02 0.71 16 36 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.39 2.99 8.53 -74.06 -0.63 2.36 16 38 H 0.13 1.30 7.99 -2.39 -0.02 1.28 16 39 H 0.10 1.35 7.16 -2.39 -0.02 1.33 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.06 1.43 7.82 -2.39 -0.02 1.41 16 44 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 Total: -1.00 -78.52 358.17 1.97 -76.56 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.33 Total: 8.87 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.80 Total: -25.36 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.41 Total: -74.41 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.78 Total: -32.52 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -78.52 1.97 -76.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326904513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.928 kcal (2) G-P(sol) polarization free energy of solvation -78.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds