Wall clock time and date at job start Tue Mar 31 2020 07:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 119.99892 * 2 1 4 4 N 1.46502 * 109.47221 * 124.99555 * 3 2 1 5 5 C 1.46497 * 120.00112 * 92.85330 * 4 3 2 6 6 C 1.50691 * 109.47147 * 95.84365 * 5 4 3 7 7 H 1.07997 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99955 * 180.27433 * 6 5 4 9 9 N 1.31513 * 120.00034 * 359.72775 * 8 6 5 10 10 Si 1.86803 * 119.99752 * 179.72495 * 8 6 5 11 11 H 1.48493 * 109.47243 * 60.00281 * 10 8 6 12 12 H 1.48503 * 109.46782 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47064 * 300.00088 * 10 8 6 14 14 C 1.34781 * 119.99910 * 272.85476 * 4 3 2 15 15 O 1.21282 * 119.99783 * 5.23219 * 14 4 3 16 16 C 1.50696 * 119.99793 * 185.23023 * 14 4 3 17 17 H 1.08998 * 109.54496 * 41.37891 * 16 14 4 18 18 C 1.53178 * 109.54397 * 281.19879 * 16 14 4 19 19 C 1.53105 * 109.15687 * 183.24047 * 18 16 14 20 20 O 1.42902 * 109.48385 * 57.48135 * 19 18 16 21 21 C 1.42907 * 114.09521 * 298.88534 * 20 19 18 22 22 C 1.52997 * 109.48088 * 301.17605 * 21 20 19 23 23 C 1.53005 * 109.47999 * 181.14479 * 21 20 19 24 24 C 1.53088 * 109.41603 * 61.16097 * 21 20 19 25 25 H 1.08002 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.99948 * 180.02562 * 1 2 3 27 27 H 1.07994 * 119.99876 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47063 * 4.99158 * 3 2 1 29 29 H 1.08998 * 109.46845 * 244.99091 * 3 2 1 30 30 H 1.09005 * 109.47115 * 335.84158 * 5 4 3 31 31 H 1.09000 * 109.46957 * 215.84525 * 5 4 3 32 32 H 0.96994 * 119.99824 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.52390 * 303.06227 * 18 16 14 34 34 H 1.09000 * 109.51827 * 63.25385 * 18 16 14 35 35 H 1.09001 * 109.40772 * 297.49941 * 19 18 16 36 36 H 1.08999 * 109.48987 * 177.51262 * 19 18 16 37 37 H 1.09002 * 109.47273 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47123 * 299.94317 * 22 21 20 39 39 H 1.09002 * 109.47304 * 59.94428 * 22 21 20 40 40 H 1.09008 * 109.47069 * 300.05866 * 23 21 20 41 41 H 1.08997 * 109.47194 * 60.05161 * 23 21 20 42 42 H 1.08996 * 109.47153 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.52165 * 182.48403 * 24 21 20 44 44 H 1.09004 * 109.57502 * 62.32798 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3771 0.8841 0.9533 6 6 5.2604 2.0754 0.6862 7 1 4.8340 3.0670 0.6522 8 6 6.6121 1.8988 0.4792 9 7 7.1314 0.6912 0.5201 10 14 7.7058 3.3749 0.1405 11 1 7.6385 4.3146 1.2883 12 1 9.1073 2.9203 -0.0448 13 1 7.2411 4.0631 -1.0906 14 6 2.5768 1.7689 2.3364 15 8 1.4096 2.0497 2.5090 16 6 3.5608 1.9082 3.4692 17 1 4.4910 2.3346 3.0938 18 6 3.8380 0.5309 4.0795 19 6 4.7749 0.6924 5.2796 20 8 4.1836 1.5812 6.2296 21 6 3.9466 2.8981 5.7277 22 6 5.2685 3.5128 5.2635 23 6 3.3414 3.7646 6.8341 24 6 2.9748 2.8254 4.5470 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6214 1.4025 -0.9313 30 1 4.4304 0.1958 0.1097 31 1 4.7142 0.3772 1.8575 32 1 8.0823 0.5671 0.3748 33 1 2.9005 0.0828 4.4085 34 1 4.3072 -0.1103 3.3332 35 1 5.7275 1.1016 4.9430 36 1 4.9407 -0.2792 5.7450 37 1 5.0875 4.5170 4.8802 38 1 5.9603 3.5644 6.1043 39 1 5.6996 2.8950 4.4756 40 1 2.3999 3.3261 7.1650 41 1 4.0334 3.8161 7.6746 42 1 3.1603 4.7688 6.4510 43 1 2.8271 3.8236 4.1349 44 1 2.0187 2.4258 4.8851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335963871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:34 Heat of formation + Delta-G solvation = -75.752229 kcal Electronic energy + Delta-G solvation = -23883.600679 eV Core-core repulsion = 20608.074517 eV Total energy + Delta-G solvation = -3275.526162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16947 -38.53334 -35.43627 -33.89282 -33.34005 -32.79524 -32.03800 -28.00664 -27.51002 -27.11758 -26.03968 -23.76675 -23.09019 -21.85207 -19.66997 -18.92321 -18.21723 -16.74273 -16.38176 -15.83049 -15.77233 -15.15097 -14.65156 -14.50294 -14.25318 -14.14774 -13.70034 -13.27568 -12.82965 -12.76790 -12.49482 -12.37007 -12.12502 -11.88575 -11.82592 -11.56896 -11.42576 -11.24135 -11.06400 -10.94001 -10.84995 -10.69419 -10.63535 -10.27094 -10.14405 -9.84726 -9.71867 -9.37089 -9.16178 -8.73185 -8.53946 -7.74342 -6.24381 -4.31808 2.58695 3.18783 3.24751 3.26586 3.42320 3.99008 4.06607 4.28161 5.02183 5.04547 5.08248 5.18053 5.25203 5.34256 5.35410 5.54706 5.57259 5.75138 5.77747 5.79432 5.82511 5.89582 5.96517 6.00092 6.12787 6.15629 6.19615 6.24264 6.29961 6.35820 6.41270 6.49784 6.50079 6.69439 6.84383 6.93298 7.12962 7.19520 7.52129 7.57659 7.70882 8.00493 8.32523 8.74299 9.03820 9.36057 10.81833 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010428 B = 0.008678 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.440864 B = 3225.905867 C = 5071.715988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.144 3.856 4 N -0.594 5.594 5 C 0.231 3.769 6 C -0.540 4.540 7 H 0.060 0.940 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.525 3.475 15 O -0.572 6.572 16 C -0.108 4.108 17 H 0.118 0.882 18 C -0.144 4.144 19 C 0.063 3.937 20 O -0.379 6.379 21 C 0.112 3.888 22 C -0.183 4.183 23 C -0.134 4.134 24 C -0.119 4.119 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.266 0.734 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 1.169 6.230 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C 0.021 3.979 4 N -0.324 5.324 5 C 0.112 3.888 6 C -0.578 4.578 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.313 3.687 15 O -0.453 6.453 16 C -0.129 4.129 17 H 0.136 0.864 18 C -0.182 4.182 19 C -0.014 4.014 20 O -0.298 6.298 21 C 0.073 3.927 22 C -0.240 4.240 23 C -0.192 4.192 24 C -0.157 4.157 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.068 1.157 6.461 8.293 hybrid contribution 0.916 0.685 -0.766 1.377 sum -4.152 1.841 5.695 7.284 Atomic orbital electron populations 1.23710 0.95871 1.01251 1.01682 1.23390 0.96138 0.99320 0.98878 1.20401 0.92381 0.94696 0.90390 1.48220 1.13244 1.62686 1.08205 1.19603 0.75161 0.95579 0.98488 1.21457 0.92545 0.93724 1.50088 0.92173 1.24920 0.97892 0.95941 0.94838 1.69901 1.13264 1.20776 1.48730 0.86634 0.79474 0.82748 0.79146 1.19987 1.21091 1.20120 1.20425 0.88313 0.76088 0.83875 1.90572 1.18865 1.52459 1.83373 1.21378 1.00595 0.97243 0.93710 0.86397 1.22195 1.00774 0.96706 0.98508 1.22547 0.95597 0.93595 0.89641 1.87890 1.82370 1.21105 1.38458 1.21468 0.94274 0.83338 0.93610 1.22486 0.97495 1.01866 1.02157 1.21725 1.01078 0.98599 0.97754 1.21978 0.99070 1.00047 0.94612 0.88716 0.89087 0.87660 0.90927 0.89693 0.94611 0.93776 0.92407 0.91610 0.89283 0.92236 0.89090 0.91633 0.92249 0.90846 0.91995 0.92118 0.91304 0.91175 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 29.01 0.42 -2.40 16 2 C -0.16 -2.65 9.83 -36.02 -0.35 -3.00 16 3 C 0.14 2.70 5.75 -5.19 -0.03 2.67 16 4 N -0.59 -12.40 2.46 -176.44 -0.43 -12.84 16 5 C 0.23 5.28 4.84 -5.20 -0.03 5.25 16 6 C -0.54 -13.40 8.11 -34.44 -0.28 -13.68 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 10 Si 0.89 19.88 29.54 -169.99 -5.02 14.85 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.52 11.03 6.79 -10.99 -0.07 10.96 16 15 O -0.57 -13.01 15.64 5.56 0.09 -12.93 16 16 C -0.11 -2.03 1.49 -91.59 -0.14 -2.17 16 17 H 0.12 2.41 5.02 -51.93 -0.26 2.15 16 18 C -0.14 -2.48 5.20 -26.59 -0.14 -2.62 16 19 C 0.06 0.98 6.51 37.21 0.24 1.22 16 20 O -0.38 -6.12 10.24 -35.23 -0.36 -6.48 16 21 C 0.11 1.69 1.11 -90.57 -0.10 1.59 16 22 C -0.18 -2.69 7.93 37.16 0.29 -2.39 16 23 C -0.13 -1.68 8.85 37.16 0.33 -1.35 16 24 C -0.12 -2.02 3.72 -26.59 -0.10 -2.12 16 25 H 0.09 1.41 7.84 -52.49 -0.41 1.00 16 26 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.07 1.37 7.24 -51.93 -0.38 0.99 16 29 H 0.08 1.54 8.05 -51.93 -0.42 1.12 16 30 H 0.04 0.86 8.03 -51.93 -0.42 0.45 16 31 H 0.04 1.02 4.71 -51.93 -0.24 0.78 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.61 5.65 -51.93 -0.29 1.32 16 35 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.21 4.98 -51.93 -0.26 0.95 16 40 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.36 7.81 -51.93 -0.41 0.95 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -27.64 345.43 -7.03 -34.67 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.19 Total: 6.66 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.05 Total: -6.43 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.30 Total: -35.55 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.27 Total: -19.41 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.64 -7.03 -34.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335963871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.083 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds