Wall clock time and date at job start Tue Mar 31 2020 07:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99753 * 2 1 4 4 N 1.46501 * 109.46791 * 123.71639 * 3 2 1 5 5 C 1.46499 * 120.00144 * 95.47063 * 4 3 2 6 6 C 1.50698 * 109.46916 * 276.15025 * 5 4 3 7 7 H 1.08003 * 120.00030 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00139 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00325 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99725 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47208 * 269.99437 * 10 8 6 12 12 H 1.48493 * 109.47420 * 29.99783 * 10 8 6 13 13 H 1.48505 * 109.46929 * 150.00099 * 10 8 6 14 14 C 1.34778 * 119.99717 * 275.46369 * 4 3 2 15 15 O 1.21287 * 120.00002 * 4.82933 * 14 4 3 16 16 C 1.50702 * 119.99873 * 184.83153 * 14 4 3 17 17 H 1.08997 * 109.54291 * 306.65623 * 16 14 4 18 18 C 1.53175 * 109.54617 * 66.92724 * 16 14 4 19 19 C 1.53091 * 109.16284 * 176.84665 * 18 16 14 20 20 O 1.42907 * 109.41668 * 302.39098 * 19 18 16 21 21 C 1.42909 * 114.09594 * 61.15984 * 20 19 18 22 22 C 1.52996 * 109.47874 * 178.85828 * 21 20 19 23 23 C 1.52996 * 109.48245 * 58.82222 * 21 20 19 24 24 C 1.53093 * 109.41238 * 298.84046 * 21 20 19 25 25 H 1.08007 * 120.00279 * 185.10604 * 1 2 3 26 26 H 1.07999 * 120.00307 * 5.11729 * 1 2 3 27 27 H 1.08003 * 119.99807 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47075 * 3.71367 * 3 2 1 29 29 H 1.08994 * 109.46600 * 243.71076 * 3 2 1 30 30 H 1.09000 * 109.46673 * 156.15453 * 5 4 3 31 31 H 1.08996 * 109.47077 * 36.15288 * 5 4 3 32 32 H 0.96992 * 119.99886 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.52209 * 296.75372 * 18 16 14 34 34 H 1.08999 * 109.51957 * 56.94563 * 18 16 14 35 35 H 1.08997 * 109.48247 * 182.41071 * 19 18 16 36 36 H 1.08996 * 109.48025 * 62.37353 * 19 18 16 37 37 H 1.08998 * 109.46840 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47471 * 299.93883 * 22 21 20 39 39 H 1.09002 * 109.47254 * 59.94531 * 22 21 20 40 40 H 1.09004 * 109.47323 * 300.06453 * 23 21 20 41 41 H 1.09005 * 109.47068 * 60.05759 * 23 21 20 42 42 H 1.08993 * 109.47181 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.52337 * 297.70600 * 24 21 20 44 44 H 1.09004 * 109.52232 * 177.51532 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9716 1.3447 1.1489 5 6 4.3730 0.9492 0.9888 6 6 4.4881 -0.5492 1.1016 7 1 3.6055 -1.1471 1.2747 8 6 5.7200 -1.1569 0.9827 9 7 5.8204 -2.4646 1.0805 10 14 7.2464 -0.1228 0.6825 11 1 7.4593 0.0330 -0.7789 12 1 7.0679 1.2148 1.3021 13 1 8.4257 -0.7944 1.2856 14 6 2.5176 1.7450 2.3531 15 8 1.3394 1.9885 2.5068 16 6 3.4740 1.8902 3.5087 17 1 4.0338 0.9638 3.6373 18 6 4.4439 3.0425 3.2296 19 6 5.3597 3.2332 4.4415 20 8 4.5652 3.4838 5.6026 21 6 3.6728 2.4197 5.9397 22 6 2.8991 2.7853 7.2080 23 6 4.4742 1.1391 6.1819 24 6 2.6892 2.1964 4.7881 25 1 -0.5401 -0.9316 0.0832 26 1 -0.5400 0.9315 -0.0834 27 1 1.8500 -0.9354 0.0004 28 1 1.3570 2.1325 0.0666 29 1 2.6392 1.3921 -0.9214 30 1 4.9743 1.4193 1.7670 31 1 4.7311 1.2685 0.0102 32 1 6.6871 -2.8920 0.9973 33 1 5.0456 2.8076 2.3516 34 1 3.8799 3.9581 3.0516 35 1 6.0236 4.0796 4.2658 36 1 5.9526 2.3315 4.5944 37 1 2.2182 1.9738 7.4647 38 1 3.5995 2.9443 8.0279 39 1 2.3286 3.6979 7.0353 40 1 5.0258 0.8793 5.2784 41 1 5.1745 1.2983 7.0019 42 1 3.7934 0.3276 6.4386 43 1 2.0899 3.0949 4.6414 44 1 2.0361 1.3563 5.0246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335963872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:43 Heat of formation + Delta-G solvation = -65.961685 kcal Electronic energy + Delta-G solvation = -23894.878387 eV Core-core repulsion = 20619.776775 eV Total energy + Delta-G solvation = -3275.101612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.35235 -38.66621 -35.55434 -33.92850 -33.46130 -32.80697 -32.07794 -28.19412 -28.09587 -27.22282 -26.20759 -23.81692 -22.83270 -21.87813 -19.59387 -18.99921 -18.42223 -17.01910 -16.63219 -15.94014 -15.89279 -15.28314 -14.79052 -14.57167 -14.33983 -14.10074 -13.65844 -13.25682 -13.01295 -12.87105 -12.65207 -12.47571 -12.25719 -12.13338 -11.98255 -11.74355 -11.63417 -11.33887 -11.11635 -10.92593 -10.88197 -10.83296 -10.52262 -10.43002 -10.24532 -9.93176 -9.59139 -9.47263 -9.10491 -8.79255 -8.65836 -7.81310 -6.26022 -4.27287 2.72648 3.11781 3.17756 3.21954 3.31104 3.85735 3.93984 4.20808 4.86114 4.91401 5.01941 5.02609 5.07486 5.18765 5.37761 5.48247 5.55869 5.60087 5.67278 5.70018 5.74328 5.79533 5.88027 5.90231 5.95259 6.01311 6.06706 6.12773 6.16125 6.25357 6.34705 6.36485 6.38749 6.48816 6.62742 6.66653 7.17390 7.22389 7.34956 7.41025 7.42915 8.08683 8.38267 8.78861 8.89767 9.33068 10.86474 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.007785 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.782004 B = 3595.755975 C = 4982.734426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.151 3.849 4 N -0.587 5.587 5 C 0.196 3.804 6 C -0.539 4.539 7 H 0.080 0.920 8 C 0.076 3.924 9 N -0.890 5.890 10 Si 0.868 3.132 11 H -0.274 1.274 12 H -0.264 1.264 13 H -0.283 1.283 14 C 0.525 3.475 15 O -0.563 6.563 16 C -0.108 4.108 17 H 0.109 0.891 18 C -0.153 4.153 19 C 0.061 3.939 20 O -0.377 6.377 21 C 0.111 3.889 22 C -0.134 4.134 23 C -0.182 4.182 24 C -0.117 4.117 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 9.454 5.490 11.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.169 4.169 3 C 0.028 3.972 4 N -0.317 5.317 5 C 0.075 3.925 6 C -0.578 4.578 7 H 0.098 0.902 8 C -0.128 4.128 9 N -0.528 5.528 10 Si 0.695 3.305 11 H -0.199 1.199 12 H -0.188 1.188 13 H -0.208 1.208 14 C 0.313 3.687 15 O -0.442 6.442 16 C -0.129 4.129 17 H 0.127 0.873 18 C -0.191 4.191 19 C -0.016 4.016 20 O -0.296 6.296 21 C 0.072 3.928 22 C -0.192 4.192 23 C -0.240 4.240 24 C -0.155 4.155 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.286 9.597 5.654 11.370 hybrid contribution 1.016 -0.206 -0.571 1.184 sum -1.269 9.390 5.083 10.753 Atomic orbital electron populations 1.23656 0.95921 1.00999 1.02703 1.23462 0.95889 0.99784 0.97719 1.20344 0.92574 0.95201 0.89083 1.47890 1.11961 1.63760 1.08089 1.20131 0.77665 0.97133 0.97529 1.21412 0.95686 0.89871 1.50806 0.90169 1.24882 0.98643 0.94784 0.94448 1.69887 1.25049 1.08664 1.49165 0.86974 0.83363 0.80956 0.79215 1.19917 1.18819 1.20844 1.20354 0.88451 0.76159 0.83717 1.90599 1.17558 1.52604 1.83488 1.21337 0.96828 1.01068 0.93654 0.87267 1.22379 0.98453 0.98331 0.99906 1.22560 0.92741 1.01746 0.84522 1.87909 1.54463 1.41870 1.45394 1.21514 0.89552 0.87255 0.94523 1.21721 0.99652 1.02165 0.95617 1.22482 1.01088 0.97668 1.02733 1.21965 0.97469 1.03272 0.92799 0.89114 0.89222 0.86375 0.91133 0.90231 0.93432 0.95576 0.92361 0.89198 0.91052 0.88927 0.92440 0.91143 0.92051 0.91943 0.91254 0.92093 0.91344 0.90589 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 14.31 29.01 0.42 -2.85 16 2 C -0.15 -2.81 9.76 -36.03 -0.35 -3.16 16 3 C 0.15 2.77 5.79 -5.19 -0.03 2.74 16 4 N -0.59 -11.84 2.46 -176.44 -0.43 -12.27 16 5 C 0.20 4.17 3.76 -5.19 -0.02 4.15 16 6 C -0.54 -13.75 9.93 -34.44 -0.34 -14.09 16 7 H 0.08 2.30 7.19 -52.48 -0.38 1.92 16 8 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 10 Si 0.87 19.13 27.47 -169.99 -4.67 14.46 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.26 -5.32 6.54 56.52 0.37 -4.95 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.53 10.62 6.92 -10.98 -0.08 10.54 16 15 O -0.56 -12.45 15.65 5.55 0.09 -12.36 16 16 C -0.11 -1.89 1.45 -91.59 -0.13 -2.02 16 17 H 0.11 2.07 6.15 -51.93 -0.32 1.75 16 18 C -0.15 -2.36 5.05 -26.59 -0.13 -2.50 16 19 C 0.06 0.85 6.52 37.20 0.24 1.09 16 20 O -0.38 -5.59 10.24 -35.23 -0.36 -5.95 16 21 C 0.11 1.54 1.11 -90.58 -0.10 1.44 16 22 C -0.13 -1.56 8.85 37.16 0.33 -1.24 16 23 C -0.18 -2.46 7.93 37.16 0.29 -2.17 16 24 C -0.12 -1.86 3.58 -26.59 -0.10 -1.96 16 25 H 0.09 1.40 8.06 -52.48 -0.42 0.97 16 26 H 0.09 1.41 7.85 -52.49 -0.41 1.00 16 27 H 0.12 2.47 7.24 -52.48 -0.38 2.09 16 28 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16 29 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 30 H 0.05 0.97 3.01 -51.93 -0.16 0.81 16 31 H 0.03 0.54 7.39 -51.93 -0.38 0.16 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.09 1.42 5.43 -51.93 -0.28 1.14 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.02 4.98 -51.93 -0.26 0.77 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.27 7.94 -51.93 -0.41 0.85 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -29.19 341.19 -6.63 -35.82 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.07 Total: 7.80 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.10 Total: -8.12 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.34 Total: -36.79 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.27 Total: -18.31 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.19 -6.63 -35.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335963872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.145 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds