Wall clock time and date at job start Tue Mar 31 2020 07:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47927 * 2 1 4 4 C 1.53088 * 109.48367 * 120.02297 * 2 1 3 5 5 C 1.53187 * 109.16337 * 62.37284 * 4 2 1 6 6 H 1.09002 * 109.53882 * 297.03084 * 5 4 2 7 7 C 1.50697 * 109.54505 * 176.84946 * 5 4 2 8 8 O 1.21284 * 119.99858 * 325.94947 * 7 5 4 9 9 N 1.34771 * 119.99703 * 145.95067 * 7 5 4 10 10 C 1.46504 * 119.99972 * 184.75295 * 9 7 5 11 11 C 1.53000 * 109.47422 * 178.57264 * 10 9 7 12 12 C 1.50697 * 115.54593 * 39.70176 * 11 10 9 13 13 H 1.07994 * 120.00015 * 267.80657 * 12 11 10 14 14 C 1.37882 * 120.00036 * 87.81578 * 12 11 10 15 15 N 1.31513 * 120.00009 * 180.63687 * 14 12 11 16 16 Si 1.86797 * 119.99897 * 0.63164 * 14 12 11 17 17 H 1.48502 * 109.47182 * 87.64054 * 16 14 12 18 18 H 1.48500 * 109.47328 * 207.64307 * 16 14 12 19 19 H 1.48498 * 109.47288 * 327.64187 * 16 14 12 20 20 C 1.52999 * 117.49845 * 253.99485 * 11 10 9 21 21 C 1.52997 * 117.49804 * 185.37296 * 11 10 9 22 22 C 1.53182 * 109.10569 * 56.93375 * 5 4 2 23 23 C 1.53095 * 109.15902 * 303.15789 * 22 5 4 24 24 O 1.42901 * 109.48050 * 239.96895 * 2 1 3 25 25 H 1.09000 * 109.46818 * 299.97551 * 1 2 3 26 26 H 1.09002 * 109.46761 * 59.97242 * 1 2 3 27 27 H 1.08992 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47344 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47418 * 300.02188 * 3 2 1 30 30 H 1.08997 * 109.47457 * 60.02467 * 3 2 1 31 31 H 1.09007 * 109.52326 * 302.47058 * 4 2 1 32 32 H 1.08993 * 109.57988 * 182.31038 * 4 2 1 33 33 H 0.96998 * 120.00051 * 5.02450 * 9 7 5 34 34 H 1.09005 * 109.46813 * 298.57727 * 10 9 7 35 35 H 1.09006 * 109.47319 * 58.56778 * 10 9 7 36 36 H 0.97000 * 120.00037 * 180.02562 * 15 14 12 37 37 H 1.09005 * 117.49554 * 359.97438 * 20 11 10 38 38 H 1.08991 * 117.49941 * 145.02086 * 20 11 10 39 39 H 1.08996 * 117.50042 * 214.98099 * 21 11 10 40 40 H 1.09008 * 117.49857 * 359.97438 * 21 11 10 41 41 H 1.08999 * 109.51415 * 62.97318 * 22 5 4 42 42 H 1.08998 * 109.51811 * 183.15646 * 22 5 4 43 43 H 1.09000 * 109.40625 * 297.49032 * 23 22 5 44 44 H 1.09004 * 109.49439 * 177.50950 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 1.5758 -2.1813 1.2123 6 1 0.4868 -2.2178 1.2426 7 6 2.1382 -2.9200 2.3993 8 8 3.2358 -2.6326 2.8280 9 7 1.4216 -3.9000 2.9844 10 6 1.9214 -4.5471 4.2000 11 6 0.9090 -5.5911 4.6753 12 6 0.2508 -6.4003 3.5878 13 1 -0.6867 -6.0729 3.1633 14 6 0.8455 -7.5589 3.1347 15 7 0.2774 -8.2584 2.1768 16 14 2.4580 -8.1347 3.8813 17 1 2.1793 -8.9783 5.0712 18 1 3.2128 -8.9278 2.8780 19 1 3.2640 -6.9557 4.2882 20 6 0.0709 -5.2517 5.9096 21 6 1.1888 -6.2918 6.0063 22 6 2.0747 -2.8336 -0.0807 23 6 1.5646 -2.0285 -1.2789 24 8 2.0066 -0.6742 -1.1664 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1303 1.4423 -0.0005 29 1 1.6767 1.9564 -0.8897 30 1 1.6774 1.9562 0.8902 31 1 1.6422 -0.2355 2.1399 32 1 3.1298 -0.6873 1.2721 33 1 0.5768 -4.1797 2.5984 34 1 2.8731 -5.0343 3.9873 35 1 2.0632 -3.7975 4.9787 36 1 0.6956 -9.0737 1.8583 37 1 0.2412 -4.2848 6.3832 38 1 -0.9569 -5.6136 5.9351 39 1 0.8965 -7.3380 6.0956 40 1 2.0945 -6.0093 6.5432 41 1 3.1646 -2.8426 -0.0870 42 1 1.7006 -3.8556 -0.1409 43 1 0.4750 -2.0551 -1.2956 44 1 1.9529 -2.4622 -2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337259373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:17 Heat of formation + Delta-G solvation = -76.353056 kcal Electronic energy + Delta-G solvation = -23177.585736 eV Core-core repulsion = 19902.033520 eV Total energy + Delta-G solvation = -3275.552216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39533 -38.70474 -37.05444 -33.70800 -33.54717 -33.21235 -32.22414 -28.42732 -27.44084 -26.89955 -25.52351 -24.05125 -22.38518 -21.74807 -19.79580 -19.34519 -18.95345 -16.87598 -16.49676 -16.13387 -15.86580 -15.19555 -14.92941 -14.74120 -14.42390 -14.26755 -13.77625 -13.51041 -13.12903 -12.86918 -12.59096 -12.55913 -12.36718 -12.30591 -12.20094 -11.93329 -11.73905 -11.30539 -11.21895 -11.07138 -10.78802 -10.65407 -10.52895 -10.24508 -10.17411 -9.75068 -9.64481 -9.27320 -9.04987 -8.75780 -8.62927 -8.18589 -6.24766 -4.30528 3.12040 3.23602 3.34170 3.39486 3.67871 3.81499 4.33510 4.64209 4.72733 4.79686 4.84544 4.94840 4.98802 5.08650 5.19410 5.36462 5.38996 5.45485 5.56390 5.59368 5.66209 5.67415 5.70498 5.79666 5.89464 5.95267 5.99946 6.03293 6.04394 6.16781 6.18552 6.25304 6.36960 6.40436 6.50614 6.67281 6.87921 7.03171 7.19816 7.25374 7.61417 8.27076 8.32183 8.74259 8.83888 9.38967 10.85763 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.004624 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.439105 B = 6053.269632 C = 6469.509994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.111 3.889 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.106 4.106 6 H 0.090 0.910 7 C 0.510 3.490 8 O -0.561 6.561 9 N -0.696 5.696 10 C 0.152 3.848 11 C -0.016 4.016 12 C -0.495 4.495 13 H 0.079 0.921 14 C 0.084 3.916 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.258 1.258 20 C -0.178 4.178 21 C -0.197 4.197 22 C -0.145 4.145 23 C 0.062 3.938 24 O -0.375 6.375 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 14.190 -3.807 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.193 4.193 4 C -0.161 4.161 5 C -0.128 4.128 6 H 0.108 0.892 7 C 0.295 3.705 8 O -0.441 6.441 9 N -0.346 5.346 10 C 0.028 3.972 11 C -0.017 4.017 12 C -0.532 4.532 13 H 0.097 0.903 14 C -0.119 4.119 15 N -0.528 5.528 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.182 1.182 20 C -0.215 4.215 21 C -0.235 4.235 22 C -0.184 4.184 23 C -0.014 4.014 24 O -0.294 6.294 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.904 14.303 -3.730 14.809 hybrid contribution 0.238 -1.004 0.504 1.149 sum 1.142 13.298 -3.226 13.731 Atomic orbital electron populations 1.22482 0.95775 1.02942 1.02680 1.21483 0.93046 0.92785 0.85464 1.21736 1.02065 0.93275 1.02271 1.22036 1.03034 0.93275 0.97755 1.21326 1.01436 0.95798 0.94200 0.89188 1.20443 0.85340 0.80515 0.84216 1.90630 1.20486 1.67531 1.65449 1.46023 1.25211 1.35624 1.27747 1.21031 0.97136 0.93680 0.85310 1.19620 0.96773 0.96810 0.88485 1.20128 1.08143 1.06663 1.18261 0.90289 1.24953 0.96995 0.95922 0.94076 1.69877 1.39484 1.16057 1.27388 0.86874 0.84254 0.79398 0.78720 1.20299 1.22156 1.18221 1.22895 0.96341 0.97957 1.04345 1.22947 0.99262 0.98040 1.03202 1.22140 1.02734 1.00228 0.93254 1.22570 0.98881 0.81914 0.98083 1.87946 1.73856 1.24625 1.42981 0.91428 0.91879 0.91597 0.91753 0.91913 0.91155 0.90898 0.89773 0.75242 0.92260 0.93586 0.92382 0.90896 0.89439 0.89179 0.90761 0.90400 0.89739 0.92627 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 7.93 37.16 0.29 -1.48 16 2 C 0.11 1.27 1.11 -90.57 -0.10 1.17 16 3 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 4 C -0.12 -1.62 3.91 -26.59 -0.10 -1.72 16 5 C -0.11 -1.52 2.29 -91.58 -0.21 -1.73 16 6 H 0.09 1.14 6.62 -51.93 -0.34 0.80 16 7 C 0.51 9.40 6.84 -10.99 -0.08 9.33 16 8 O -0.56 -12.17 16.21 5.55 0.09 -12.08 16 9 N -0.70 -13.43 5.35 -60.29 -0.32 -13.75 16 10 C 0.15 3.20 5.61 -4.04 -0.02 3.18 16 11 C -0.02 -0.34 1.20 -155.66 -0.19 -0.53 16 12 C -0.49 -12.49 8.01 -34.44 -0.28 -12.77 16 13 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 14 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 15 N -0.89 -25.42 13.96 55.43 0.77 -24.64 16 16 Si 0.88 21.16 24.93 -169.99 -4.24 16.93 16 17 H -0.28 -6.53 7.07 56.52 0.40 -6.13 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.06 5.56 56.52 0.31 -5.75 16 20 C -0.18 -3.41 9.88 -26.73 -0.26 -3.68 16 21 C -0.20 -4.02 7.56 -26.73 -0.20 -4.22 16 22 C -0.15 -1.99 5.41 -26.59 -0.14 -2.14 16 23 C 0.06 0.72 6.51 37.21 0.24 0.97 16 24 O -0.37 -4.83 10.24 -35.23 -0.36 -5.19 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.66 4.98 -51.93 -0.26 0.40 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 33 H 0.41 7.72 7.40 -40.82 -0.30 7.42 16 34 H 0.06 1.37 6.53 -51.93 -0.34 1.03 16 35 H 0.05 0.92 7.95 -51.93 -0.41 0.51 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.09 1.93 7.03 -51.93 -0.37 1.56 16 40 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -29.66 339.61 -7.23 -36.89 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.47 Total: 9.16 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.82 Total: -12.44 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.45 Total: -38.39 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.24 Total: 16.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.66 -7.23 -36.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337259373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.465 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds