Wall clock time and date at job start Tue Mar 31 2020 07:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47897 * 2 1 4 4 C 1.53087 * 109.48338 * 239.97524 * 2 1 3 5 5 C 1.53204 * 109.14921 * 297.61818 * 4 2 1 6 6 H 1.08998 * 109.61613 * 62.93888 * 5 4 2 7 7 C 1.50706 * 109.53742 * 183.15789 * 5 4 2 8 8 O 1.21274 * 120.00055 * 33.18428 * 7 5 4 9 9 N 1.34780 * 119.99581 * 213.17893 * 7 5 4 10 10 C 1.46501 * 119.99646 * 185.04425 * 9 7 5 11 11 C 1.53007 * 109.46762 * 185.19060 * 10 9 7 12 12 C 1.50696 * 115.54784 * 276.72311 * 11 10 9 13 13 H 1.08008 * 119.99927 * 93.45144 * 12 11 10 14 14 C 1.37880 * 120.00266 * 273.45039 * 12 11 10 15 15 N 1.31516 * 119.99648 * 8.56340 * 14 12 11 16 16 Si 1.86798 * 119.99939 * 188.56481 * 14 12 11 17 17 H 1.48493 * 109.47212 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46879 * 120.00323 * 16 14 12 19 19 H 1.48504 * 109.47121 * 239.99747 * 16 14 12 20 20 C 1.53006 * 117.49669 * 131.01714 * 11 10 9 21 21 C 1.52997 * 117.49670 * 62.39444 * 11 10 9 22 22 C 1.53178 * 109.04047 * 303.02277 * 5 4 2 23 23 C 1.53091 * 109.16488 * 56.98144 * 22 5 4 24 24 O 1.42899 * 109.47997 * 120.02107 * 2 1 3 25 25 H 1.08999 * 109.47593 * 60.00012 * 1 2 3 26 26 H 1.09005 * 109.47326 * 299.99921 * 1 2 3 27 27 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47650 * 59.99913 * 3 2 1 29 29 H 1.08998 * 109.47344 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47584 * 299.99598 * 3 2 1 31 31 H 1.09001 * 109.52181 * 57.53304 * 4 2 1 32 32 H 1.09000 * 109.52329 * 177.71760 * 4 2 1 33 33 H 0.96996 * 120.00071 * 5.05194 * 9 7 5 34 34 H 1.08995 * 109.47400 * 305.18874 * 10 9 7 35 35 H 1.08993 * 109.47170 * 65.19394 * 10 9 7 36 36 H 0.96995 * 119.99378 * 185.00369 * 15 14 12 37 37 H 1.08999 * 117.49529 * 0.02562 * 20 11 10 38 38 H 1.08998 * 117.49605 * 145.01744 * 20 11 10 39 39 H 1.09003 * 117.49433 * 214.97698 * 21 11 10 40 40 H 1.09002 * 117.50430 * 0.02562 * 21 11 10 41 41 H 1.09001 * 109.52211 * 297.07959 * 22 5 4 42 42 H 1.08995 * 109.52406 * 176.89073 * 22 5 4 43 43 H 1.08995 * 109.48657 * 182.40699 * 23 22 5 44 44 H 1.08998 * 109.48857 * 62.37605 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0406 -0.7221 -1.2495 5 6 1.5757 -2.1815 -1.2118 6 1 0.4867 -2.2195 -1.2413 7 6 2.1382 -2.9205 -2.3987 8 8 3.2289 -2.6225 -2.8372 9 7 1.4291 -3.9126 -2.9727 10 6 2.0201 -4.7041 -4.0545 11 6 0.9712 -5.6682 -4.6127 12 6 0.8032 -6.9576 -3.8512 13 1 0.0506 -7.0354 -3.0803 14 6 1.6100 -8.0382 -4.1384 15 7 2.6329 -7.8969 -4.9529 16 14 1.2502 -9.7027 -3.3707 17 1 0.0529 -9.5972 -2.4988 18 1 0.9950 -10.6976 -4.4432 19 1 2.4167 -10.1366 -2.5604 20 6 0.7926 -5.7156 -6.1316 21 6 -0.2766 -5.0595 -5.2556 22 6 2.0764 -2.8322 0.0813 23 6 1.5645 -2.0283 1.2794 24 8 2.0065 -0.6740 1.1665 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6769 1.9564 0.8899 29 1 3.1301 1.4423 0.0005 30 1 1.6770 1.9563 -0.8900 31 1 1.6421 -0.2355 -2.1398 32 1 3.1298 -0.6872 -1.2709 33 1 0.5275 -4.1024 -2.6695 34 1 2.3603 -4.0385 -4.8477 35 1 2.8666 -5.2719 -3.6687 36 1 3.1568 -8.6709 -5.2122 37 1 1.4226 -5.0604 -6.7331 38 1 0.5536 -6.6798 -6.5802 39 1 -1.2191 -5.5920 -5.1280 40 1 -0.3502 -3.9723 -5.2813 41 1 3.1664 -2.8399 0.0868 42 1 1.7037 -3.8546 0.1426 43 1 1.9530 -2.4619 2.2009 44 1 0.4750 -2.0548 1.2963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337259376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:25 Heat of formation + Delta-G solvation = -80.013969 kcal Electronic energy + Delta-G solvation = -22927.028523 eV Core-core repulsion = 19651.317558 eV Total energy + Delta-G solvation = -3275.710965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44324 -38.68592 -36.73735 -33.75702 -33.57603 -33.15799 -31.98044 -28.47689 -27.48982 -26.71028 -25.42542 -24.05299 -22.42841 -21.27076 -19.74852 -19.42712 -19.05716 -16.99841 -16.33421 -16.06180 -15.89949 -14.90977 -14.90047 -14.65855 -14.52323 -14.37566 -13.76507 -13.45972 -13.23254 -12.85571 -12.62881 -12.54255 -12.27338 -12.01198 -11.80855 -11.73792 -11.57652 -11.35452 -11.12185 -11.11054 -10.92058 -10.71957 -10.55033 -10.32271 -10.23770 -9.76764 -9.67710 -9.15166 -8.97337 -8.50514 -8.24741 -8.20450 -6.12632 -4.19975 3.11353 3.23087 3.32590 3.34671 3.63005 3.79379 4.33820 4.58373 4.69993 4.75430 4.86425 4.92618 5.12167 5.16718 5.25684 5.28228 5.32115 5.40038 5.52414 5.53420 5.60241 5.62996 5.74213 5.83651 5.92255 5.96713 6.00442 6.12300 6.12734 6.30577 6.31965 6.39926 6.58395 6.62887 6.83959 7.04179 7.19279 7.21913 7.39735 7.46823 7.78127 8.22398 8.30752 8.78766 8.84826 9.47269 10.96289 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.004059 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.514738 B = 6897.027981 C = 7376.652059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 C -0.137 4.137 4 C -0.124 4.124 5 C -0.107 4.107 6 H 0.087 0.913 7 C 0.509 3.491 8 O -0.553 6.553 9 N -0.708 5.708 10 C 0.161 3.839 11 C 0.028 3.972 12 C -0.500 4.500 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.873 5.873 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.148 4.148 21 C -0.210 4.210 22 C -0.144 4.144 23 C 0.062 3.938 24 O -0.374 6.374 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.397 0.603 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 13.611 9.463 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.194 4.194 4 C -0.162 4.162 5 C -0.129 4.129 6 H 0.105 0.895 7 C 0.294 3.706 8 O -0.432 6.432 9 N -0.357 5.357 10 C 0.039 3.961 11 C 0.027 3.973 12 C -0.537 4.537 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.508 5.508 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.186 4.186 21 C -0.247 4.247 22 C -0.182 4.182 23 C -0.014 4.014 24 O -0.294 6.294 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.231 0.769 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.056 13.786 9.225 17.077 hybrid contribution -0.766 -1.421 0.094 1.618 sum -4.822 12.365 9.319 16.217 Atomic orbital electron populations 1.22479 0.95834 1.02796 1.02721 1.21492 0.92990 0.92854 0.85453 1.21739 1.02147 0.93213 1.02291 1.22050 1.03166 0.93257 0.97728 1.21352 1.01187 0.95994 0.94333 0.89459 1.20415 0.85589 0.80510 0.84119 1.90653 1.21482 1.66704 1.64341 1.46174 1.18343 1.33573 1.37569 1.21133 0.96802 0.90901 0.87287 1.19077 0.91424 0.94490 0.92326 1.20417 1.18143 0.94868 1.20276 0.92137 1.24975 0.93952 0.98883 0.95293 1.70042 1.16388 1.29888 1.34531 0.86617 0.78298 0.84316 0.79259 1.19708 1.20902 1.21019 1.22511 1.00894 1.00233 0.94977 1.22979 0.94915 0.97177 1.09627 1.22124 1.02907 0.99949 0.93249 1.22568 0.98732 0.82066 0.98072 1.87952 1.73838 1.24559 1.43017 0.91400 0.91875 0.91735 0.91917 0.91686 0.91111 0.90837 0.89669 0.76911 0.94066 0.91043 0.92904 0.91669 0.89853 0.90277 0.91661 0.90237 0.90039 0.88653 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 7.93 37.16 0.29 -1.34 16 2 C 0.11 1.20 1.11 -90.58 -0.10 1.10 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.12 -1.58 3.90 -26.58 -0.10 -1.68 16 5 C -0.11 -1.44 2.30 -91.57 -0.21 -1.65 16 6 H 0.09 1.00 6.59 -51.93 -0.34 0.65 16 7 C 0.51 9.20 6.85 -10.98 -0.08 9.13 16 8 O -0.55 -12.19 16.16 5.56 0.09 -12.10 16 9 N -0.71 -13.23 5.47 -60.29 -0.33 -13.56 16 10 C 0.16 3.66 5.63 -4.04 -0.02 3.64 16 11 C 0.03 0.64 1.37 -155.66 -0.21 0.43 16 12 C -0.50 -12.81 8.81 -34.44 -0.30 -13.12 16 13 H 0.06 1.53 7.83 -52.48 -0.41 1.12 16 14 C 0.07 1.93 5.37 -17.82 -0.10 1.83 16 15 N -0.87 -24.15 12.93 55.43 0.72 -23.44 16 16 Si 0.89 20.40 29.55 -169.99 -5.02 15.37 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.15 -3.35 9.37 -26.72 -0.25 -3.60 16 21 C -0.21 -4.25 9.83 -26.73 -0.26 -4.51 16 22 C -0.14 -1.81 5.40 -26.59 -0.14 -1.96 16 23 C 0.06 0.66 6.52 37.20 0.24 0.90 16 24 O -0.37 -4.57 10.24 -35.23 -0.36 -4.93 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 33 H 0.40 6.60 8.42 -40.82 -0.34 6.26 16 34 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 35 H 0.07 1.86 8.10 -51.93 -0.42 1.44 16 36 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 37 H 0.06 1.42 8.06 -51.93 -0.42 1.00 16 38 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.50 6.34 -51.93 -0.33 0.17 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -29.72 350.88 -8.08 -37.80 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.54 Total: 7.33 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.92 Total: -11.77 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.39 Total: -37.00 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.27 Total: -17.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.72 -8.08 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337259376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.213 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds