Wall clock time and date at job start Tue Mar 31 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.54981 * 2 1 4 4 C 1.52992 * 109.46884 * 34.33700 * 3 2 1 5 5 C 1.50704 * 109.47004 * 179.97438 * 4 3 2 6 6 O 1.20826 * 119.99872 * 359.97438 * 5 4 3 7 7 O 1.34225 * 119.99969 * 179.97438 * 5 4 3 8 8 C 1.45202 * 117.00071 * 180.02562 * 7 5 4 9 9 C 1.53040 * 109.45963 * 270.02963 * 8 7 5 10 10 C 1.53197 * 109.31173 * 178.59893 * 9 8 7 11 11 N 1.46923 * 108.76321 * 54.65719 * 10 9 8 12 12 C 1.36934 * 120.63279 * 126.36367 * 11 10 9 13 13 H 1.07998 * 119.99784 * 331.85385 * 12 11 10 14 14 C 1.38810 * 120.00381 * 151.84998 * 12 11 10 15 15 N 1.31621 * 120.00085 * 343.07537 * 14 12 11 16 16 Si 1.86802 * 120.00133 * 163.07246 * 14 12 11 17 17 H 1.48501 * 109.47166 * 60.00307 * 16 14 12 18 18 H 1.48503 * 109.47082 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47040 * 300.00230 * 16 14 12 20 20 C 1.46923 * 118.73886 * 306.37518 * 11 10 9 21 21 C 1.53039 * 109.46556 * 149.97129 * 8 7 5 22 22 C 1.52994 * 117.51909 * 145.70684 * 2 1 3 23 23 C 1.52995 * 60.00194 * 107.47739 * 22 2 1 24 24 H 1.08999 * 109.47347 * 85.57686 * 1 2 3 25 25 H 1.08995 * 109.47077 * 205.58284 * 1 2 3 26 26 H 1.09004 * 109.46527 * 325.57944 * 1 2 3 27 27 H 1.08992 * 109.47019 * 274.33080 * 3 2 1 28 28 H 1.08999 * 109.46395 * 154.33388 * 3 2 1 29 29 H 1.09001 * 109.47696 * 60.00062 * 4 3 2 30 30 H 1.09001 * 109.46997 * 299.99491 * 4 3 2 31 31 H 1.09001 * 109.46095 * 30.00012 * 8 7 5 32 32 H 1.09005 * 109.49521 * 298.56440 * 9 8 7 33 33 H 1.08997 * 109.49559 * 58.65855 * 9 8 7 34 34 H 1.09002 * 109.59937 * 294.86546 * 10 9 8 35 35 H 1.09004 * 109.70112 * 174.50617 * 10 9 8 36 36 H 0.96994 * 120.00034 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.59090 * 293.82892 * 20 11 10 38 38 H 1.09005 * 109.70423 * 173.46733 * 20 11 10 39 39 H 1.08998 * 109.49631 * 301.34516 * 21 8 7 40 40 H 1.09005 * 109.49472 * 61.39807 * 21 8 7 41 41 H 1.09002 * 117.50042 * 214.96672 * 22 2 1 42 42 H 1.09004 * 117.50312 * 359.97438 * 22 2 1 43 43 H 1.09005 * 117.50295 * 252.51137 * 23 22 2 44 44 H 1.09000 * 117.49952 * 107.48777 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3352 2.3542 0.8136 5 6 1.9855 3.7137 0.8142 6 8 3.0261 3.8859 0.2247 7 8 1.4087 4.7333 1.4695 8 6 2.0908 6.0144 1.4267 9 6 3.0647 6.1131 2.6031 10 6 3.8076 7.4511 2.5350 11 7 2.8201 8.5375 2.4767 12 6 2.8668 9.5716 3.3731 13 1 3.2824 9.4145 4.3574 14 6 2.3800 10.8217 3.0166 15 7 2.1857 11.1152 1.7484 16 14 2.0005 12.0875 4.3369 17 1 3.2361 12.3890 5.1034 18 1 1.4966 13.3310 3.7003 19 1 0.9665 11.5488 5.2567 20 6 1.7815 8.4932 1.4384 21 6 1.0616 7.1434 1.5186 22 6 2.2369 -1.1210 0.7645 23 6 2.2364 -1.1207 -0.7655 24 1 -0.3634 0.0793 -1.0246 25 1 -0.3633 -0.9269 0.4437 26 1 -0.3632 0.8478 0.5809 27 1 2.2766 1.7417 -1.0247 28 1 3.1823 1.3086 0.4451 29 1 1.2486 1.9929 1.8384 30 1 0.3428 2.4259 0.3685 31 1 2.6422 6.1012 0.4905 32 1 2.5109 6.0515 3.5400 33 1 3.7831 5.2951 2.5502 34 1 4.4327 7.4772 1.6424 35 1 4.4308 7.5710 3.4212 36 1 1.8451 11.9886 1.4993 37 1 2.2414 8.6042 0.4564 38 1 1.0657 9.2992 1.5999 39 1 0.3541 7.0587 0.6938 40 1 0.5264 7.0716 2.4656 41 1 3.1721 -0.8751 1.2675 42 1 1.6120 -1.8586 1.2681 43 1 1.6111 -1.8582 -1.2688 44 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345050516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:39 Heat of formation + Delta-G solvation = -59.070926 kcal Electronic energy + Delta-G solvation = -22216.479662 eV Core-core repulsion = 18941.676856 eV Total energy + Delta-G solvation = -3274.802806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40032 -38.70748 -37.43002 -35.78939 -32.89997 -32.45289 -30.35910 -29.63586 -28.57452 -25.97042 -24.74406 -22.72890 -22.36118 -22.04032 -20.41078 -19.31050 -19.01915 -17.48933 -16.97663 -16.21935 -16.03506 -15.51074 -14.89543 -14.56493 -14.18161 -13.88202 -13.58344 -13.35078 -13.18788 -12.94426 -12.66688 -12.65936 -12.46907 -12.23565 -11.80956 -11.54534 -11.45532 -11.26867 -11.20520 -11.04641 -10.73344 -10.73041 -10.43864 -10.42201 -10.21572 -10.17340 -9.89790 -9.86602 -9.65186 -9.43316 -8.49734 -6.73455 -5.82324 -3.25121 2.41283 2.91878 3.37935 3.43453 3.44823 3.45117 4.38011 4.40795 4.47548 4.61605 4.65856 4.89727 5.02566 5.10011 5.26478 5.31262 5.35866 5.37648 5.42338 5.45803 5.50700 5.54652 5.61646 5.74108 5.75061 5.78131 5.84911 5.92008 6.00886 6.07036 6.23122 6.40430 6.42047 6.51095 6.58766 6.72425 6.88159 6.98195 7.28113 7.57596 7.76817 8.01644 8.41329 9.17173 9.79905 10.36773 11.26959 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.049851 B = 0.002862 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.536463 B = 9782.170782 C = 9889.318628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 C -0.070 4.070 4 C -0.114 4.114 5 C 0.455 3.545 6 O -0.513 6.513 7 O -0.359 6.359 8 C 0.098 3.902 9 C -0.146 4.146 10 C 0.149 3.851 11 N -0.592 5.592 12 C -0.255 4.255 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.904 5.904 16 Si 0.905 3.095 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.174 3.826 21 C -0.135 4.135 22 C -0.176 4.176 23 C -0.175 4.175 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.255 0.745 37 H 0.022 0.978 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -21.742 -3.122 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.152 4.152 5 C 0.298 3.702 6 O -0.402 6.402 7 O -0.275 6.275 8 C 0.044 3.956 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.315 5.315 12 C -0.385 4.385 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.735 3.265 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.048 3.952 21 C -0.175 4.175 22 C -0.213 4.213 23 C -0.212 4.212 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.571 -21.454 -3.353 22.006 hybrid contribution -0.067 0.654 0.559 0.863 sum -3.639 -20.800 -2.794 21.300 Atomic orbital electron populations 1.21510 0.91949 1.02454 1.02242 1.21494 0.94930 0.90824 1.05624 1.20928 0.98146 0.90779 1.00910 1.21483 1.00973 0.88809 1.03901 1.23680 0.83559 0.87507 0.75476 1.90646 1.23381 1.84300 1.41865 1.86554 1.53095 1.20501 1.67389 1.22930 0.94328 0.78443 0.99916 1.22455 0.98086 0.99976 0.97987 1.20860 0.91252 0.86395 0.99270 1.44106 1.28587 1.22996 1.35834 1.19154 1.38508 0.87902 0.92891 0.91566 1.25071 1.01942 0.96758 0.95814 1.70009 1.48703 1.21590 1.14499 0.86333 0.78471 0.80606 0.81138 1.20830 1.21593 1.20956 1.20806 0.91492 0.91982 0.90931 1.22455 0.97511 0.95704 1.01806 1.23190 1.02517 1.01157 0.94415 1.23029 1.02551 1.01125 0.94496 0.92074 0.92426 0.91185 0.90568 0.90758 0.87806 0.87527 0.90401 0.91393 0.92740 0.96078 0.92103 0.93452 0.96021 0.88565 0.92433 0.91483 0.88749 0.88860 0.88825 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.49 37.16 0.35 -0.49 16 2 C -0.13 -1.02 2.47 -154.51 -0.38 -1.40 16 3 C -0.07 -0.68 4.69 -26.73 -0.13 -0.81 16 4 C -0.11 -1.16 4.82 -27.89 -0.13 -1.29 16 5 C 0.45 6.83 7.93 36.01 0.29 7.11 16 6 O -0.51 -9.18 15.20 -18.75 -0.29 -9.46 16 7 O -0.36 -6.01 9.88 -39.24 -0.39 -6.40 16 8 C 0.10 1.85 2.42 -26.69 -0.06 1.78 16 9 C -0.15 -2.77 5.72 -26.61 -0.15 -2.93 16 10 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 11 N -0.59 -15.06 2.99 -172.32 -0.52 -15.57 16 12 C -0.26 -7.02 9.58 -15.06 -0.14 -7.16 16 13 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 14 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 15 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 16 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 21 C -0.14 -2.68 5.74 -26.61 -0.15 -2.84 16 22 C -0.18 -1.29 9.82 -26.74 -0.26 -1.56 16 23 C -0.18 -1.29 9.97 -26.73 -0.27 -1.56 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 26 H 0.07 0.45 5.59 -51.93 -0.29 0.16 16 27 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.11 0.90 6.45 -51.93 -0.33 0.57 16 31 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 2.54 6.06 -51.93 -0.31 2.23 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 42 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -30.50 350.31 -9.07 -39.57 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.57 Total: -0.68 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.17 Total: -3.77 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.11 Total: -41.10 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.67 Total: -15.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.50 -9.07 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345050516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.503 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds