Wall clock time and date at job start Tue Mar 31 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.54981 * 2 1 4 4 C 1.52992 * 109.46884 * 34.33700 * 3 2 1 5 5 C 1.50704 * 109.47004 * 179.97438 * 4 3 2 6 6 O 1.20826 * 119.99872 * 359.97438 * 5 4 3 7 7 O 1.34225 * 119.99969 * 179.97438 * 5 4 3 8 8 C 1.45202 * 117.00071 * 180.02562 * 7 5 4 9 9 C 1.53040 * 109.45963 * 270.02963 * 8 7 5 10 10 C 1.53197 * 109.31173 * 178.59893 * 9 8 7 11 11 N 1.46923 * 108.76321 * 54.65719 * 10 9 8 12 12 C 1.36934 * 120.63279 * 126.36367 * 11 10 9 13 13 H 1.07998 * 119.99784 * 331.85385 * 12 11 10 14 14 C 1.38810 * 120.00381 * 151.84998 * 12 11 10 15 15 N 1.31621 * 120.00085 * 343.07537 * 14 12 11 16 16 Si 1.86802 * 120.00133 * 163.07246 * 14 12 11 17 17 H 1.48501 * 109.47166 * 60.00307 * 16 14 12 18 18 H 1.48503 * 109.47082 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47040 * 300.00230 * 16 14 12 20 20 C 1.46923 * 118.73886 * 306.37518 * 11 10 9 21 21 C 1.53039 * 109.46556 * 149.97129 * 8 7 5 22 22 C 1.52994 * 117.51909 * 145.70684 * 2 1 3 23 23 C 1.52995 * 60.00194 * 107.47739 * 22 2 1 24 24 H 1.08999 * 109.47347 * 85.57686 * 1 2 3 25 25 H 1.08995 * 109.47077 * 205.58284 * 1 2 3 26 26 H 1.09004 * 109.46527 * 325.57944 * 1 2 3 27 27 H 1.08992 * 109.47019 * 274.33080 * 3 2 1 28 28 H 1.08999 * 109.46395 * 154.33388 * 3 2 1 29 29 H 1.09001 * 109.47696 * 60.00062 * 4 3 2 30 30 H 1.09001 * 109.46997 * 299.99491 * 4 3 2 31 31 H 1.09001 * 109.46095 * 30.00012 * 8 7 5 32 32 H 1.09005 * 109.49521 * 298.56440 * 9 8 7 33 33 H 1.08997 * 109.49559 * 58.65855 * 9 8 7 34 34 H 1.09002 * 109.59937 * 294.86546 * 10 9 8 35 35 H 1.09004 * 109.70112 * 174.50617 * 10 9 8 36 36 H 0.96994 * 120.00034 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.59090 * 293.82892 * 20 11 10 38 38 H 1.09005 * 109.70423 * 173.46733 * 20 11 10 39 39 H 1.08998 * 109.49631 * 301.34516 * 21 8 7 40 40 H 1.09005 * 109.49472 * 61.39807 * 21 8 7 41 41 H 1.09002 * 117.50042 * 214.96672 * 22 2 1 42 42 H 1.09004 * 117.50312 * 359.97438 * 22 2 1 43 43 H 1.09005 * 117.50295 * 252.51137 * 23 22 2 44 44 H 1.09000 * 117.49952 * 107.48777 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3352 2.3542 0.8136 5 6 1.9855 3.7137 0.8142 6 8 3.0261 3.8859 0.2247 7 8 1.4087 4.7333 1.4695 8 6 2.0908 6.0144 1.4267 9 6 3.0647 6.1131 2.6031 10 6 3.8076 7.4511 2.5350 11 7 2.8201 8.5375 2.4767 12 6 2.8668 9.5716 3.3731 13 1 3.2824 9.4145 4.3574 14 6 2.3800 10.8217 3.0166 15 7 2.1857 11.1152 1.7484 16 14 2.0005 12.0875 4.3369 17 1 3.2361 12.3890 5.1034 18 1 1.4966 13.3310 3.7003 19 1 0.9665 11.5488 5.2567 20 6 1.7815 8.4932 1.4384 21 6 1.0616 7.1434 1.5186 22 6 2.2369 -1.1210 0.7645 23 6 2.2364 -1.1207 -0.7655 24 1 -0.3634 0.0793 -1.0246 25 1 -0.3633 -0.9269 0.4437 26 1 -0.3632 0.8478 0.5809 27 1 2.2766 1.7417 -1.0247 28 1 3.1823 1.3086 0.4451 29 1 1.2486 1.9929 1.8384 30 1 0.3428 2.4259 0.3685 31 1 2.6422 6.1012 0.4905 32 1 2.5109 6.0515 3.5400 33 1 3.7831 5.2951 2.5502 34 1 4.4327 7.4772 1.6424 35 1 4.4308 7.5710 3.4212 36 1 1.8451 11.9886 1.4993 37 1 2.2414 8.6042 0.4564 38 1 1.0657 9.2992 1.5999 39 1 0.3541 7.0587 0.6938 40 1 0.5264 7.0716 2.4656 41 1 3.1721 -0.8751 1.2675 42 1 1.6120 -1.8586 1.2681 43 1 1.6111 -1.8582 -1.2688 44 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345050516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:39 Heat of formation + Delta-G solvation = -73.927161 kcal Electronic energy + Delta-G solvation = -22217.123877 eV Core-core repulsion = 18941.676856 eV Total energy + Delta-G solvation = -3275.447021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68931 -39.53252 -38.90692 -37.29193 -34.62907 -33.49253 -32.13261 -31.46312 -29.13410 -27.42699 -26.18518 -24.06993 -23.75210 -23.25880 -21.66116 -21.04564 -19.69445 -18.88989 -18.67348 -17.41360 -17.36113 -16.79844 -16.15654 -15.82438 -15.46934 -15.37852 -15.04848 -14.89485 -14.37603 -14.24790 -14.17975 -13.74676 -13.29699 -13.21359 -13.06688 -13.03101 -12.67133 -12.59103 -12.50369 -12.40955 -12.16400 -12.11389 -11.99923 -11.95402 -11.87922 -11.54018 -11.34935 -11.06568 -10.99324 -10.56788 -10.47269 -8.77595 -7.91528 -5.37999 1.21517 1.48154 1.50511 1.57655 1.69339 2.50129 2.86040 3.24809 3.50715 3.61601 3.69955 3.78634 3.83967 3.92577 4.02185 4.13401 4.16716 4.24513 4.35138 4.41735 4.54261 4.55253 4.72145 4.82097 4.83691 4.86101 4.89001 4.93483 4.98119 5.02442 5.06129 5.10734 5.16524 5.19636 5.24148 5.30663 5.38181 5.46306 5.54712 5.61727 5.69129 6.34901 6.76051 7.09694 7.77941 8.31327 9.16218 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.049851 B = 0.002862 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.536463 B = 9782.170782 C = 9889.318628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.133 4.133 3 C -0.067 4.067 4 C -0.104 4.104 5 C 0.452 3.548 6 O -0.545 6.545 7 O -0.355 6.355 8 C 0.104 3.896 9 C -0.132 4.132 10 C 0.146 3.854 11 N -0.610 5.610 12 C -0.269 4.269 13 H 0.070 0.930 14 C -0.049 4.049 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.275 1.275 18 H -0.293 1.293 19 H -0.276 1.276 20 C 0.180 3.820 21 C -0.121 4.121 22 C -0.174 4.174 23 C -0.178 4.178 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.012 0.988 35 H 0.066 0.934 36 H 0.252 0.748 37 H -0.001 1.001 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -23.624 -2.083 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.297 3.703 6 O -0.435 6.435 7 O -0.272 6.272 8 C 0.050 3.950 9 C -0.171 4.171 10 C 0.020 3.980 11 N -0.334 5.334 12 C -0.398 4.398 13 H 0.088 0.912 14 C -0.244 4.244 15 N -0.581 5.581 16 Si 0.799 3.201 17 H -0.201 1.201 18 H -0.219 1.219 19 H -0.202 1.202 20 C 0.054 3.946 21 C -0.161 4.161 22 C -0.211 4.211 23 C -0.215 4.215 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.682 -23.377 -2.306 23.952 hybrid contribution 0.348 1.166 0.179 1.230 sum -4.334 -22.211 -2.126 22.729 Atomic orbital electron populations 1.21536 0.90752 1.03245 1.02621 1.21467 0.95717 0.89735 1.06352 1.20865 0.97790 0.91897 0.99909 1.21641 1.01434 0.85447 1.05531 1.24703 0.83180 0.88309 0.74115 1.90643 1.25007 1.84743 1.43146 1.86557 1.52831 1.19911 1.67907 1.22582 0.93822 0.79576 0.99058 1.22263 0.98166 0.98509 0.98200 1.20954 0.91035 0.86887 0.99074 1.44366 1.29827 1.23466 1.35734 1.19501 1.38219 0.88669 0.93457 0.91248 1.25860 1.02135 0.98687 0.97734 1.70166 1.49764 1.21864 1.16350 0.85282 0.78393 0.77848 0.78549 1.20095 1.21942 1.20164 1.20587 0.90837 0.93611 0.89551 1.22173 0.97474 0.93707 1.02701 1.23251 1.02458 1.00987 0.94376 1.23096 1.02490 1.01138 0.94765 0.91895 0.91457 0.90636 0.91910 0.92049 0.85545 0.85156 0.91971 0.90980 0.91311 0.96976 0.91535 0.93851 0.98266 0.91276 0.90448 0.91293 0.89162 0.87610 0.87725 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.49 71.98 0.68 -0.64 16 2 C -0.13 -1.82 2.47 -52.18 -0.13 -1.95 16 3 C -0.07 -1.21 4.69 30.59 0.14 -1.06 16 4 C -0.10 -1.83 4.82 29.85 0.14 -1.68 16 5 C 0.45 12.81 7.93 71.24 0.56 13.37 16 6 O -0.55 -19.17 15.20 21.97 0.33 -18.84 16 7 O -0.36 -11.21 9.88 -51.37 -0.51 -11.72 16 8 C 0.10 3.85 2.42 30.62 0.07 3.92 16 9 C -0.13 -4.89 5.72 30.67 0.18 -4.71 16 10 C 0.15 6.38 6.52 86.36 0.56 6.94 16 11 N -0.61 -31.37 2.99 -699.09 -2.09 -33.46 16 12 C -0.27 -14.86 9.58 84.03 0.81 -14.05 16 13 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 14 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 15 N -0.94 -55.35 11.19 21.65 0.24 -55.10 16 16 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 C 0.18 8.84 5.30 86.36 0.46 9.30 16 21 C -0.12 -4.74 5.74 30.67 0.18 -4.56 16 22 C -0.17 -2.19 9.82 30.59 0.30 -1.89 16 23 C -0.18 -2.33 9.97 30.59 0.31 -2.02 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.60 7.90 -2.39 -0.02 0.58 16 26 H 0.07 0.70 5.59 -2.39 -0.01 0.69 16 27 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 28 H 0.06 1.25 7.86 -2.39 -0.02 1.23 16 29 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.13 1.75 6.45 -2.39 -0.02 1.74 16 31 H 0.06 2.51 7.16 -2.39 -0.02 2.50 16 32 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 2.77 7.93 -2.38 -0.02 2.75 16 36 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.07 3.76 6.06 -2.38 -0.01 3.74 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.09 1.21 8.05 -2.39 -0.02 1.19 16 42 H 0.11 1.07 8.05 -2.39 -0.02 1.05 16 43 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -65.81 350.31 5.65 -60.16 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.96 Total: 13.70 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 4.68 Total: -1.33 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -1.85 Total: -88.57 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.17 Total: -30.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.81 5.65 -60.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345050516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.766 kcal (2) G-P(sol) polarization free energy of solvation -65.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds