Wall clock time and date at job start Tue Mar 31 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48494 * 109.47478 * 269.99840 * 3 2 1 5 5 H 1.48499 * 109.47110 * 30.00015 * 3 2 1 6 6 H 1.48505 * 109.47025 * 149.99536 * 3 2 1 7 7 C 1.37871 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00039 * 359.72548 * 7 2 1 10 10 C 1.53005 * 109.47286 * 180.27353 * 9 7 2 11 11 C 1.50698 * 109.47286 * 179.97438 * 10 9 7 12 12 O 1.20824 * 120.00204 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00203 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00078 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46871 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.88071 * 63.17311 * 15 14 13 17 17 C 1.54319 * 109.89429 * 301.97447 * 15 14 13 18 18 C 1.55136 * 103.02041 * 218.31079 * 17 15 14 19 19 C 1.54906 * 101.65352 * 35.65091 * 18 17 15 20 20 N 1.47443 * 109.88957 * 184.20028 * 15 14 13 21 21 C 1.46905 * 110.99949 * 356.15289 * 20 15 14 22 22 C 1.53000 * 109.47229 * 186.81440 * 21 20 15 23 23 C 1.53005 * 117.49974 * 243.74503 * 22 21 20 24 24 C 1.53002 * 117.49764 * 175.08763 * 22 21 20 25 25 H 0.97006 * 119.99793 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47483 * 300.27637 * 9 7 2 27 27 H 1.08999 * 109.47007 * 60.27636 * 9 7 2 28 28 H 1.08997 * 109.47091 * 300.00523 * 10 9 7 29 29 H 1.08999 * 109.46867 * 60.00196 * 10 9 7 30 30 H 1.09002 * 109.47138 * 299.99806 * 14 13 11 31 31 H 1.08996 * 109.47124 * 60.00545 * 14 13 11 32 32 H 1.09004 * 110.70060 * 336.69323 * 17 15 14 33 33 H 1.08994 * 110.70747 * 99.92443 * 17 15 14 34 34 H 1.08991 * 110.99323 * 277.56235 * 18 17 15 35 35 H 1.09003 * 110.99276 * 153.73996 * 18 17 15 36 36 H 1.09002 * 110.37597 * 204.09663 * 19 18 17 37 37 H 1.09006 * 110.37392 * 81.75846 * 19 18 17 38 38 H 1.08998 * 109.46804 * 306.81854 * 21 20 15 39 39 H 1.09002 * 109.46849 * 66.81392 * 21 20 15 40 40 H 1.09000 * 115.54703 * 29.41924 * 22 21 20 41 41 H 1.08997 * 117.49400 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49353 * 145.01986 * 23 22 21 43 43 H 1.08998 * 117.49498 * 214.98464 * 24 22 21 44 44 H 1.09003 * 117.49674 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0074 10 6 2.2451 -3.6621 0.0134 11 6 1.4916 -4.9671 0.0209 12 8 0.2834 -4.9671 0.0209 13 8 2.1627 -6.1296 0.0276 14 6 1.3719 -7.3473 0.0340 15 6 2.3039 -8.5606 0.0404 16 1 2.8965 -8.5680 0.9553 17 6 3.2332 -8.5155 -1.1907 18 6 3.3232 -10.0048 -1.6155 19 6 1.8935 -10.5083 -1.2960 20 7 1.5129 -9.8013 -0.0546 21 6 0.0730 -9.5104 -0.0348 22 6 -0.7113 -10.8221 0.0365 23 6 -1.6156 -11.1697 -1.1478 24 6 -2.2315 -10.7291 0.1825 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5522 0.8976 27 1 0.6243 -2.5615 -0.8823 28 1 2.8718 -3.6090 -0.8768 29 1 2.8718 -3.5997 0.9031 30 1 0.7427 -7.3672 0.9239 31 1 0.7435 -7.3771 -0.8561 32 1 2.7913 -7.9141 -1.9852 33 1 4.2164 -8.1325 -0.9176 34 1 4.0662 -10.5362 -1.0209 35 1 3.5401 -10.0949 -2.6799 36 1 1.8983 -11.5860 -1.1327 37 1 1.2104 -10.2493 -2.1050 38 1 -0.1620 -8.8987 0.8362 39 1 -0.2013 -8.9718 -0.9418 40 1 -0.2064 -11.6448 0.5427 41 1 -1.6514 -10.4641 -1.9777 42 1 -1.7059 -12.2212 -1.4203 43 1 -2.7267 -11.4909 0.7846 44 1 -2.6727 -9.7335 0.2283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346763665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:30 Heat of formation + Delta-G solvation = -68.258014 kcal Electronic energy + Delta-G solvation = -22032.719203 eV Core-core repulsion = 18757.518015 eV Total energy + Delta-G solvation = -3275.201188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41397 -39.41540 -37.23840 -36.00919 -33.59806 -32.20869 -31.31469 -30.54889 -26.40196 -26.30934 -25.04954 -22.66120 -22.29851 -21.66689 -20.86359 -19.79859 -19.58859 -17.40711 -16.74489 -16.65379 -16.12010 -15.79329 -15.19647 -14.97333 -14.62867 -14.47532 -14.38007 -13.95968 -13.23399 -12.86143 -12.80685 -12.56716 -12.25466 -12.04345 -11.81769 -11.72332 -11.41706 -11.33509 -11.27513 -11.08655 -10.97010 -10.85889 -10.65288 -10.53428 -10.42221 -10.09815 -10.03920 -9.94907 -9.58614 -9.19519 -8.59553 -8.39104 -6.02836 -4.07829 2.80674 2.96369 3.30690 3.36965 3.39887 3.49840 3.74106 4.32793 4.42067 4.46411 4.48906 4.65984 4.68301 4.81307 4.95555 5.01317 5.12977 5.14877 5.32348 5.32613 5.35871 5.38174 5.41276 5.48887 5.57381 5.64497 5.66169 5.70803 5.80312 5.86413 5.92323 5.99796 6.09652 6.10712 6.18512 6.60158 6.70699 6.77500 6.92237 7.64837 7.71575 7.96504 8.23853 8.39555 8.99262 9.56329 11.08181 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.003007 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.484199 B = 9309.382401 C =10157.030440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.507 6.507 13 O -0.363 6.363 14 C 0.049 3.951 15 C 0.074 3.926 16 H 0.099 0.901 17 C -0.132 4.132 18 C -0.132 4.132 19 C 0.043 3.957 20 N -0.513 5.513 21 C 0.067 3.933 22 C -0.145 4.145 23 C -0.184 4.184 24 C -0.178 4.178 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -23.909 -2.108 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.300 3.700 12 O -0.393 6.393 13 O -0.280 6.280 14 C -0.027 4.027 15 C -0.034 4.034 16 H 0.117 0.883 17 C -0.170 4.170 18 C -0.170 4.170 19 C -0.085 4.085 20 N -0.238 5.238 21 C -0.061 4.061 22 C -0.163 4.163 23 C -0.221 4.221 24 C -0.215 4.215 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.130 0.870 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.833 -24.122 -1.668 24.345 hybrid contribution -0.077 1.360 -0.691 1.528 sum 2.755 -22.761 -2.359 23.048 Atomic orbital electron populations 1.69996 1.06104 1.26768 1.49920 1.25024 0.94863 0.99356 0.95110 0.86536 0.79772 0.83207 0.78132 1.20601 1.21170 1.19772 1.21153 0.93074 0.90632 1.51814 0.92295 1.19016 0.93227 0.89307 0.98858 1.21762 1.00657 0.87600 1.03998 1.24805 0.87954 0.85693 0.71595 1.90631 1.15957 1.87687 1.45029 1.86537 1.41916 1.14753 1.84796 1.23604 0.93927 0.82743 1.02398 1.22431 0.94119 0.86350 1.00459 0.88326 1.22781 1.00670 0.96449 0.97112 1.22742 0.96907 0.95890 1.01454 1.23090 0.95689 0.99376 0.90319 1.63887 1.04317 1.19109 1.36524 1.22028 0.87273 0.95303 1.01495 1.22259 0.91846 0.99528 1.02706 1.23070 1.04944 1.01947 0.92160 1.22977 0.95268 1.03082 1.00214 0.92840 0.95592 0.95661 0.88984 0.88914 0.90935 0.91595 0.91131 0.89954 0.90537 0.90753 0.90039 0.93422 0.89642 0.93904 0.87019 0.89012 0.88918 0.88675 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.10 -2.10 5.75 -27.88 -0.16 -2.26 16 11 C 0.46 9.04 7.96 36.00 0.29 9.33 16 12 O -0.51 -11.64 15.73 -18.75 -0.29 -11.93 16 13 O -0.36 -5.96 9.83 -39.26 -0.39 -6.35 16 14 C 0.05 0.67 3.55 37.16 0.13 0.80 16 15 C 0.07 0.83 3.78 -66.72 -0.25 0.58 16 16 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.13 -1.33 6.10 -24.91 -0.15 -1.48 16 18 C -0.13 -1.08 7.08 -24.60 -0.17 -1.25 16 19 C 0.04 0.37 6.08 -2.30 -0.01 0.36 16 20 N -0.51 -5.27 5.19 -223.34 -1.16 -6.43 16 21 C 0.07 0.69 3.95 -3.82 -0.02 0.68 16 22 C -0.14 -1.29 5.30 -90.62 -0.48 -1.77 16 23 C -0.18 -1.50 10.18 -26.69 -0.27 -1.77 16 24 C -0.18 -1.50 10.25 -26.69 -0.27 -1.77 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.07 1.03 6.66 -51.93 -0.35 0.68 16 31 H 0.07 0.95 6.64 -51.93 -0.34 0.60 16 32 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 38 H 0.09 0.95 6.36 -51.93 -0.33 0.62 16 39 H 0.04 0.48 6.37 -51.93 -0.33 0.15 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.77 8.03 -51.93 -0.42 0.36 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -31.42 355.11 -10.29 -41.71 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.61 Total: -1.14 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.91 Total: -11.33 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: -0.42 Total: -32.75 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.68 Total: -18.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.42 -10.29 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346763665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.548 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds