Wall clock time and date at job start Tue Mar 31 2020 08:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 C 1.52991 * 109.47462 * 120.00037 * 2 1 3 5 5 C 1.53003 * 109.46837 * 65.00249 * 4 2 1 6 6 N 1.46507 * 109.47281 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99634 * 270.00059 * 6 5 4 8 8 C 1.50702 * 109.46921 * 274.04211 * 7 6 5 9 9 H 1.08006 * 120.00230 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00054 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00034 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47382 * 89.99696 * 12 10 8 14 14 H 1.48503 * 109.46788 * 209.99855 * 12 10 8 15 15 H 1.48501 * 109.47216 * 329.99454 * 12 10 8 16 16 C 1.34775 * 120.00227 * 89.99673 * 6 5 4 17 17 O 1.21277 * 119.99859 * 5.36889 * 16 6 5 18 18 C 1.50694 * 119.99926 * 185.36852 * 16 6 5 19 19 H 1.09000 * 109.70627 * 313.93800 * 18 16 6 20 20 C 1.53506 * 109.71079 * 74.51981 * 18 16 6 21 21 C 1.53245 * 108.15905 * 182.08863 * 20 18 16 22 22 C 1.50445 * 109.44097 * 313.17326 * 21 20 18 23 23 C 1.30684 * 122.49317 * 17.48429 * 22 21 20 24 24 O 1.35128 * 123.34733 * 359.57075 * 23 22 21 25 25 H 1.09004 * 109.47215 * 59.99896 * 1 2 3 26 26 H 1.08994 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47098 * 299.99985 * 1 2 3 28 28 H 1.08999 * 109.47452 * 240.00895 * 2 1 3 29 29 H 1.09000 * 109.47367 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47696 * 300.00317 * 3 2 1 31 31 H 1.09006 * 109.46615 * 60.00194 * 3 2 1 32 32 H 1.09004 * 109.47205 * 305.00682 * 4 2 1 33 33 H 1.08994 * 109.47728 * 185.00291 * 4 2 1 34 34 H 1.08997 * 109.47136 * 59.99923 * 5 4 2 35 35 H 1.09004 * 109.46969 * 300.00256 * 5 4 2 36 36 H 1.09004 * 109.47112 * 34.03858 * 7 6 5 37 37 H 1.08996 * 109.46834 * 154.04235 * 7 6 5 38 38 H 0.97001 * 119.99988 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.72270 * 62.41769 * 20 18 16 40 40 H 1.08998 * 109.76024 * 301.77819 * 20 18 16 41 41 H 1.09001 * 109.48300 * 73.16762 * 21 20 18 42 42 H 1.09002 * 109.47426 * 193.18763 * 21 20 18 43 43 H 1.08006 * 118.75117 * 197.48558 * 22 21 20 44 44 H 1.08008 * 118.32206 * 179.56841 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3842 7 6 3.4515 -3.5040 2.3828 8 6 3.3563 -4.8981 1.8182 9 1 2.4018 -5.2852 1.4934 10 6 4.4878 -5.6793 1.7163 11 7 4.4046 -6.8961 1.2241 12 14 6.1386 -5.0100 2.2788 13 1 6.3431 -5.3376 3.7127 14 1 7.2229 -5.6244 1.4711 15 1 6.1623 -3.5361 2.0995 16 6 1.3501 -2.9528 3.4862 17 8 0.2147 -2.5276 3.4570 18 6 1.8965 -3.5557 4.7545 19 1 2.4069 -4.4915 4.5265 20 6 2.8795 -2.5768 5.4115 21 6 3.4519 -3.2448 6.6664 22 6 2.3319 -3.8564 7.4632 23 6 1.1525 -4.0903 6.9513 24 8 0.8269 -3.8000 5.6723 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6053 -0.2618 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 2.0699 -2.6549 0.3000 35 1 0.5490 -2.2724 1.1418 36 1 4.1284 -2.9091 1.7695 37 1 3.8317 -3.5504 3.4032 38 1 5.2006 -7.4458 1.1528 39 1 2.3571 -1.6610 5.6880 40 1 3.6872 -2.3442 4.7176 41 1 4.1573 -4.0228 6.3744 42 1 3.9645 -2.4987 7.2735 43 1 2.5095 -4.1119 8.4974 44 1 0.3995 -4.5384 7.5828 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443574168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:34 Heat of formation + Delta-G solvation = -75.562975 kcal Electronic energy + Delta-G solvation = -23321.580548 eV Core-core repulsion = 20046.062593 eV Total energy + Delta-G solvation = -3275.517955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32535 -38.62090 -36.54387 -35.00014 -33.65458 -32.56741 -31.58171 -29.39367 -27.65263 -27.05740 -25.88475 -23.58588 -23.07461 -22.44669 -19.85836 -19.16799 -18.37956 -17.08319 -16.86485 -16.35453 -15.97502 -15.11536 -15.01696 -14.59059 -14.43677 -13.90781 -13.71362 -13.52306 -13.23061 -13.01294 -12.80111 -12.64897 -12.55149 -12.32204 -12.12043 -11.84122 -11.64101 -11.25728 -11.06991 -11.00494 -10.83680 -10.81206 -10.62596 -10.48737 -10.31973 -10.26868 -10.18752 -9.65807 -9.04879 -8.77238 -8.19394 -7.81809 -6.26747 -4.29331 2.47248 3.07818 3.11660 3.19192 3.21021 3.31198 4.15588 4.20683 4.82567 4.88378 5.02450 5.03234 5.07249 5.09765 5.13953 5.29285 5.45680 5.57684 5.66134 5.68670 5.75467 5.77719 5.83048 5.85204 5.93083 5.96163 6.00045 6.05931 6.20049 6.23992 6.27512 6.33857 6.36635 6.43786 6.54759 6.57609 6.64694 6.69937 7.24965 7.37536 7.79599 8.02179 8.34503 8.75628 8.84124 9.31557 10.85859 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.007578 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.815583 B = 3693.781337 C = 5456.666777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.129 4.129 5 C 0.119 3.881 6 N -0.585 5.585 7 C 0.202 3.798 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.888 5.888 12 Si 0.867 3.133 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.528 3.472 17 O -0.547 6.547 18 C 0.073 3.927 19 H 0.111 0.889 20 C -0.149 4.149 21 C -0.079 4.079 22 C -0.291 4.291 23 C 0.061 3.939 24 O -0.300 6.300 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 11.228 5.116 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.004 4.004 6 N -0.316 5.316 7 C 0.081 3.919 8 C -0.583 4.583 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.693 3.307 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.187 1.187 16 C 0.315 3.685 17 O -0.425 6.425 18 C 0.014 3.986 19 H 0.128 0.872 20 C -0.187 4.187 21 C -0.116 4.116 22 C -0.311 4.311 23 C -0.002 4.002 24 O -0.213 6.213 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.714 11.286 4.943 12.440 hybrid contribution 1.380 -0.038 0.390 1.435 sum -0.334 11.248 5.333 12.453 Atomic orbital electron populations 1.21881 0.95227 1.02221 1.01197 1.21046 0.95972 0.95874 0.98414 1.21822 1.00811 0.96201 1.01354 1.22017 1.00954 0.95926 0.97847 1.21426 1.00433 0.90721 0.87771 1.47764 1.18623 1.53679 1.11583 1.19974 0.79718 0.94511 0.97735 1.21386 0.97031 0.96688 1.43237 0.90218 1.24876 0.98738 0.94600 0.94416 1.69889 1.29786 1.08473 1.44338 0.86981 0.84245 0.79944 0.79482 1.19703 1.20714 1.18743 1.19760 0.85401 0.79001 0.84366 1.90626 1.18137 1.49190 1.84582 1.22369 0.87558 1.00751 0.87963 0.87161 1.22224 0.99522 0.98603 0.98342 1.20329 0.96704 0.99658 0.94915 1.22449 0.96415 1.10753 1.01456 1.22053 0.97356 0.96227 0.84569 1.85956 1.34028 1.83926 1.17359 0.93205 0.92128 0.92773 0.91022 0.92841 0.92967 0.92923 0.91999 0.91909 0.89976 0.90298 0.94622 0.94951 0.92270 0.90572 0.89295 0.90751 0.90646 0.86340 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.95 37.16 0.33 -1.49 16 2 C -0.09 -1.18 2.92 -90.62 -0.26 -1.44 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C -0.13 -1.93 5.01 -26.73 -0.13 -2.06 16 5 C 0.12 2.14 5.22 -4.04 -0.02 2.12 16 6 N -0.59 -11.92 2.46 -175.05 -0.43 -12.35 16 7 C 0.20 4.34 3.74 -5.19 -0.02 4.32 16 8 C -0.55 -14.22 9.94 -34.44 -0.34 -14.57 16 9 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 10 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 12 Si 0.87 19.29 27.47 -169.99 -4.67 14.62 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 16 C 0.53 11.20 6.99 -10.99 -0.08 11.12 16 17 O -0.55 -12.82 16.12 -13.84 -0.22 -13.05 16 18 C 0.07 1.40 2.38 -27.62 -0.07 1.33 16 19 H 0.11 2.26 7.27 -51.93 -0.38 1.89 16 20 C -0.15 -2.36 5.18 -26.34 -0.14 -2.50 16 21 C -0.08 -1.10 6.23 -27.88 -0.17 -1.27 16 22 C -0.29 -3.98 9.97 -36.06 -0.36 -4.34 16 23 C 0.06 0.92 10.88 29.10 0.32 1.24 16 24 O -0.30 -5.73 9.63 -36.48 -0.35 -6.08 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 35 H 0.08 1.47 5.78 -51.93 -0.30 1.17 16 36 H 0.04 0.75 7.16 -51.93 -0.37 0.38 16 37 H 0.03 0.67 4.01 -51.93 -0.21 0.46 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.37 6.33 -51.93 -0.33 1.04 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -30.28 349.67 -7.76 -38.04 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.43 Total: 5.13 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.70 Total: -6.80 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.34 Total: -37.14 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.57 Total: -19.13 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.67 Total: 14.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.28 -7.76 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443574168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.521 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds