Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00335 * 2 1 4 4 H 1.48504 * 109.47176 * 90.00219 * 3 2 1 5 5 H 1.48503 * 109.47139 * 210.00173 * 3 2 1 6 6 H 1.48499 * 109.47250 * 330.00290 * 3 2 1 7 7 C 1.37875 * 119.99300 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 185.20665 * 7 2 1 9 9 C 1.50694 * 120.00625 * 5.20630 * 7 2 1 10 10 C 1.53000 * 115.55075 * 279.36126 * 9 7 2 11 11 N 1.46500 * 109.46901 * 294.82170 * 10 9 7 12 12 C 1.34778 * 119.99834 * 184.76233 * 11 10 9 13 13 O 1.21282 * 120.00298 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47410 * 180.02562 * 14 12 11 16 16 H 1.09006 * 109.47116 * 54.99337 * 15 14 12 17 17 C 1.53008 * 109.46770 * 294.99887 * 15 14 12 18 18 C 1.52992 * 109.46923 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47092 * 60.00290 * 18 17 15 20 20 C 1.52999 * 109.47099 * 299.99600 * 19 18 17 21 21 C 1.52998 * 109.47124 * 60.00174 * 20 19 18 22 22 H 1.09002 * 109.47380 * 59.99902 * 21 20 19 23 23 O 1.42896 * 109.47223 * 180.02562 * 21 20 19 24 24 C 1.53002 * 117.50215 * 133.64573 * 9 7 2 25 25 C 1.52993 * 60.00349 * 252.51222 * 24 9 7 26 26 H 0.97003 * 119.99737 * 354.99433 * 1 2 3 27 27 H 1.08997 * 109.47550 * 54.82260 * 10 9 7 28 28 H 1.09000 * 109.46903 * 174.82417 * 10 9 7 29 29 H 0.97003 * 119.99929 * 4.75840 * 11 10 9 30 30 H 1.09008 * 109.47004 * 300.00247 * 14 12 11 31 31 H 1.09005 * 109.46879 * 59.99643 * 14 12 11 32 32 H 1.08993 * 109.47147 * 299.99815 * 17 15 14 33 33 H 1.09000 * 109.46886 * 59.99881 * 17 15 14 34 34 H 1.09005 * 109.47219 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.47580 * 300.00095 * 18 17 15 36 36 H 1.08997 * 109.47727 * 59.99722 * 19 18 17 37 37 H 1.09007 * 109.47270 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46985 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47072 * 299.99888 * 20 19 18 40 40 H 0.96704 * 114.00015 * 299.99389 * 23 21 20 41 41 H 1.08999 * 117.49451 * 0.02562 * 24 9 7 42 42 H 1.09000 * 117.50117 * 145.02262 * 24 9 7 43 43 H 1.08993 * 117.50408 * 252.51236 * 25 24 9 44 44 H 1.09008 * 117.49881 * 107.48241 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0811 -1.1962 0.0843 9 6 1.2556 -2.4964 -0.1195 10 6 0.6265 -3.0166 1.1746 11 7 1.6842 -3.3505 2.1317 12 6 1.3696 -3.9202 3.3119 13 8 0.2110 -4.1560 3.5819 14 6 2.4575 -4.2633 4.2968 15 6 1.8359 -4.8944 5.5442 16 1 1.2271 -5.7506 5.2532 17 6 0.9578 -3.8621 6.2544 18 6 0.3357 -4.4934 7.5014 19 6 1.4460 -4.9554 8.4471 20 6 2.3241 -5.9877 7.7370 21 6 2.9463 -5.3564 6.4899 22 1 3.5550 -4.5004 6.7811 23 8 3.7659 -6.3207 5.8264 24 6 1.7912 -3.5313 -1.1110 25 6 0.5060 -2.7635 -1.4264 26 1 -0.4850 0.8369 0.0733 27 1 -0.0186 -2.2478 1.5996 28 1 0.0368 -3.9076 0.9593 29 1 2.6109 -3.1617 1.9159 30 1 3.1516 -4.9691 3.8403 31 1 2.9935 -3.3562 4.5766 32 1 1.5664 -3.0060 6.5452 33 1 0.1665 -3.5332 5.5807 34 1 -0.2896 -3.7578 8.0076 35 1 -0.2731 -5.3494 7.2102 36 1 2.0548 -4.0995 8.7384 37 1 1.0028 -5.4048 9.3359 38 1 3.1149 -6.3171 8.4110 39 1 1.7153 -6.8437 7.4458 40 1 4.4924 -6.6586 6.3678 41 1 2.6854 -3.2704 -1.6769 42 1 1.6957 -4.5831 -0.8414 43 1 -0.4350 -3.3100 -1.3642 44 1 0.5546 -1.9971 -2.2000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467645096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = -96.909989 kcal Electronic energy + Delta-G solvation = -22634.426689 eV Core-core repulsion = 19357.983058 eV Total energy + Delta-G solvation = -3276.443631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 9.83 seconds Orbital eigenvalues (eV) -39.80061 -38.40216 -36.64807 -35.56971 -33.17496 -32.50726 -31.99147 -29.71398 -27.60524 -25.79189 -24.78517 -22.68888 -21.57119 -21.14654 -19.88989 -19.58745 -19.11569 -17.32297 -16.62498 -16.07775 -15.33747 -15.04648 -14.82074 -14.67927 -14.40165 -14.07271 -13.87728 -13.49810 -13.06227 -12.93578 -12.68794 -12.47362 -12.04473 -11.88893 -11.58986 -11.38914 -11.35302 -11.00556 -10.97368 -10.92742 -10.69132 -10.52402 -10.37976 -10.26920 -10.18392 -9.87077 -9.63241 -9.08068 -8.93434 -8.52244 -8.23501 -8.00288 -6.08092 -4.16841 3.24957 3.32971 3.33137 3.35021 3.94438 4.10869 4.35015 4.58431 4.66808 4.89839 5.07270 5.13676 5.20145 5.27264 5.29060 5.33554 5.40841 5.46020 5.62467 5.71120 5.76478 5.90171 5.92371 6.00859 6.05070 6.16706 6.19050 6.24538 6.35190 6.49368 6.52672 6.56798 6.62103 6.70637 6.94250 7.09843 7.35347 7.46010 7.49670 7.55192 7.81461 8.34382 8.40546 8.83969 8.99891 9.50041 10.99873 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.003934 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.218391 B = 7116.379981 C = 7502.284700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.163 3.837 11 N -0.705 5.705 12 C 0.503 3.497 13 O -0.558 6.558 14 C -0.135 4.135 15 C -0.058 4.058 16 H 0.083 0.917 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.149 4.149 21 C 0.108 3.892 22 H 0.054 0.946 23 O -0.565 6.565 24 C -0.209 4.209 25 C -0.154 4.154 26 H 0.262 0.738 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.400 0.600 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.373 0.627 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -9.286 13.968 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.029 3.971 10 C 0.040 3.960 11 N -0.353 5.353 12 C 0.289 3.711 13 O -0.438 6.438 14 C -0.175 4.175 15 C -0.077 4.077 16 H 0.101 0.899 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.187 4.187 21 C 0.049 3.951 22 H 0.072 0.928 23 O -0.370 6.370 24 C -0.247 4.247 25 C -0.192 4.192 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.234 0.766 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.220 0.780 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.715 -9.184 13.572 17.052 hybrid contribution 1.262 0.988 0.337 1.638 sum 5.977 -8.195 13.909 17.215 Atomic orbital electron populations 1.69973 1.05895 1.26913 1.48270 1.24982 0.94793 0.98923 0.94315 0.86631 0.79936 0.83555 0.78136 1.20673 1.19811 1.21168 1.20360 0.92629 0.88603 1.52214 0.92196 1.19037 0.98123 0.93574 0.86362 1.20942 0.88586 0.97359 0.89124 1.46015 1.11761 1.60476 1.17026 1.20552 0.90098 0.77783 0.82636 1.90602 1.21003 1.55103 1.77132 1.21659 0.98014 1.02325 0.95508 1.20823 0.94782 0.99049 0.93032 0.89893 1.21733 1.00125 0.97016 0.96928 1.21545 0.97464 1.00716 0.95989 1.21507 0.97373 0.98508 0.98116 1.22243 0.99883 0.99468 0.97128 1.21896 0.91457 0.90141 0.91595 0.92799 1.86556 1.45251 1.61071 1.44142 1.22977 0.98121 0.95710 1.07858 1.22528 0.92923 1.01526 1.02207 0.92855 0.90891 0.94568 0.76644 0.88557 0.89546 0.92540 0.88771 0.91969 0.91825 0.92024 0.92052 0.92082 0.91141 0.78045 0.90391 0.91610 0.91676 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 13.09 55.43 0.73 -23.58 16 2 C 0.07 1.96 5.42 -17.82 -0.10 1.86 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.50 -12.88 8.57 -34.44 -0.30 -13.17 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.70 1.32 -155.66 -0.21 0.50 16 10 C 0.16 3.77 5.50 -4.04 -0.02 3.75 16 11 N -0.70 -13.94 5.48 -60.29 -0.33 -14.27 16 12 C 0.50 9.45 7.55 -10.98 -0.08 9.36 16 13 O -0.56 -12.16 13.96 5.56 0.08 -12.08 16 14 C -0.13 -1.94 5.10 -27.88 -0.14 -2.08 16 15 C -0.06 -0.78 1.58 -90.62 -0.14 -0.92 16 16 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 17 C -0.12 -1.61 4.94 -26.73 -0.13 -1.74 16 18 C -0.12 -1.32 5.92 -26.74 -0.16 -1.48 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C -0.15 -1.35 5.54 -26.73 -0.15 -1.50 16 21 C 0.11 1.14 2.90 -26.73 -0.08 1.06 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 O -0.57 -5.97 12.56 -35.23 -0.44 -6.41 16 24 C -0.21 -4.41 9.96 -26.73 -0.27 -4.68 16 25 C -0.15 -3.54 9.66 -26.73 -0.26 -3.80 16 26 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 27 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.40 7.29 8.33 -40.82 -0.34 6.95 16 30 H 0.10 1.32 7.54 -51.92 -0.39 0.93 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.37 2.27 9.08 45.56 0.41 2.69 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -29.81 352.91 -8.78 -38.60 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.92 Total: 11.02 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.19 Total: -14.06 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.39 Total: -37.85 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.36 Total: -18.49 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.81 -8.78 -38.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467645096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.312 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.83 seconds