Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48494 * 109.47180 * 269.99642 * 3 2 1 5 5 H 1.48509 * 109.47286 * 29.99435 * 3 2 1 6 6 H 1.48503 * 109.47739 * 149.99510 * 3 2 1 7 7 C 1.37874 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00653 * 173.55976 * 7 2 1 9 9 C 1.50704 * 120.00094 * 353.55966 * 7 2 1 10 10 C 1.53003 * 115.54710 * 85.39961 * 9 7 2 11 11 N 1.46498 * 109.47233 * 65.14345 * 10 9 7 12 12 C 1.34775 * 120.00184 * 178.27920 * 11 10 9 13 13 O 1.21280 * 120.00222 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47172 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47002 * 304.99418 * 15 14 12 17 17 C 1.53000 * 109.47369 * 64.99556 * 15 14 12 18 18 C 1.53003 * 109.46978 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46991 * 299.99582 * 18 17 15 20 20 C 1.53000 * 109.46919 * 60.00381 * 19 18 17 21 21 C 1.52995 * 109.47238 * 184.99669 * 15 14 12 22 22 H 1.08997 * 109.47426 * 299.99808 * 21 15 14 23 23 O 1.42906 * 109.47069 * 59.99981 * 21 15 14 24 24 C 1.52998 * 117.50436 * 231.07130 * 9 7 2 25 25 C 1.52998 * 117.49781 * 299.73634 * 9 7 2 26 26 H 0.96997 * 119.99595 * 5.07496 * 1 2 3 27 27 H 1.09001 * 109.47245 * 305.14216 * 10 9 7 28 28 H 1.08998 * 109.46969 * 185.14589 * 10 9 7 29 29 H 0.97003 * 120.00048 * 358.28282 * 11 10 9 30 30 H 1.09002 * 109.46595 * 299.99698 * 14 12 11 31 31 H 1.08996 * 109.47530 * 59.99968 * 14 12 11 32 32 H 1.09005 * 109.46948 * 299.99619 * 17 15 14 33 33 H 1.08990 * 109.47046 * 60.00041 * 17 15 14 34 34 H 1.09002 * 109.46896 * 180.02562 * 18 17 15 35 35 H 1.08990 * 109.47606 * 59.99885 * 18 17 15 36 36 H 1.09007 * 109.47067 * 300.00479 * 19 18 17 37 37 H 1.08997 * 109.47177 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.46973 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47376 * 59.99764 * 20 19 18 40 40 H 0.96700 * 113.99766 * 180.02562 * 23 21 15 41 41 H 1.08996 * 117.49931 * 215.00440 * 24 9 7 42 42 H 1.09005 * 117.49506 * 0.02562 * 24 9 7 43 43 H 1.09000 * 117.50039 * 359.97008 * 25 9 7 44 44 H 1.09004 * 117.49917 * 144.99614 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0794 -1.1971 -0.1044 9 6 1.2582 -2.4950 0.1475 10 6 0.7022 -3.0868 -1.1492 11 7 1.8112 -3.4599 -2.0307 12 6 1.5600 -4.0371 -3.2225 13 8 0.4159 -4.2481 -3.5649 14 6 2.7009 -4.4213 -4.1290 15 6 2.1461 -5.0518 -5.4079 16 1 1.4966 -5.8879 -5.1485 17 6 1.3452 -4.0060 -6.1861 18 6 0.7899 -4.6367 -7.4647 19 6 1.9474 -5.1399 -8.3295 20 6 2.7484 -6.1857 -7.5513 21 6 3.3039 -5.5545 -6.2724 22 1 3.9535 -4.7186 -6.5317 23 8 4.0520 -6.5314 -5.5455 24 6 1.7470 -3.4730 1.2178 25 6 0.4417 -2.7005 1.4250 26 1 -0.4849 0.8368 -0.0743 27 1 0.0755 -2.3468 -1.6470 28 1 0.1075 -3.9709 -0.9194 29 1 2.7263 -3.2915 -1.7567 30 1 3.2780 -3.5322 -4.3834 31 1 3.3443 -5.1386 -3.6194 32 1 0.5203 -3.6478 -5.5702 33 1 1.9947 -3.1700 -6.4454 34 1 0.2197 -3.8915 -8.0194 35 1 0.1403 -5.4725 -7.2051 36 1 2.5971 -4.3039 -8.5892 37 1 1.5519 -5.5888 -9.2406 38 1 3.5727 -6.5444 -8.1675 39 1 2.0988 -7.0215 -7.2916 40 1 4.8037 -6.8944 -6.0337 41 1 1.6724 -4.5380 0.9981 42 1 2.6082 -3.1752 1.8160 43 1 0.4447 -1.8951 2.1593 44 1 -0.4916 -3.2575 1.3416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568407347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = -96.664972 kcal Electronic energy + Delta-G solvation = -22621.522093 eV Core-core repulsion = 19345.089086 eV Total energy + Delta-G solvation = -3276.433006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.80582 -38.40785 -36.64872 -35.57236 -33.19405 -32.51368 -31.96396 -29.71481 -27.61544 -25.79673 -24.78923 -22.69261 -21.57537 -21.13825 -19.89381 -19.59699 -19.11718 -17.32573 -16.62946 -16.07408 -15.34532 -15.04692 -14.82850 -14.68021 -14.40531 -14.07558 -13.88174 -13.49560 -13.07849 -12.93908 -12.68514 -12.48141 -12.04967 -11.90759 -11.58026 -11.39291 -11.35893 -11.00383 -10.97414 -10.92187 -10.69450 -10.52588 -10.38348 -10.26280 -10.18634 -9.87392 -9.62500 -9.09277 -8.93928 -8.49185 -8.24113 -8.01556 -6.07644 -4.16224 3.25179 3.32055 3.33243 3.35250 3.93367 4.10430 4.35300 4.58033 4.66533 4.89539 5.06873 5.13675 5.20471 5.26451 5.28699 5.33285 5.40722 5.45750 5.62076 5.70716 5.75832 5.89789 5.92096 6.00632 6.05407 6.16393 6.18805 6.24153 6.35896 6.48878 6.52313 6.56363 6.60766 6.71247 6.92862 7.10607 7.35116 7.45732 7.50512 7.54807 7.81532 8.34697 8.38982 8.84382 8.98597 9.50470 11.00210 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.003917 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.291391 B = 7146.174307 C = 7547.213323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.163 3.837 11 N -0.705 5.705 12 C 0.504 3.496 13 O -0.558 6.558 14 C -0.135 4.135 15 C -0.058 4.058 16 H 0.083 0.917 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.149 4.149 21 C 0.108 3.892 22 H 0.054 0.946 23 O -0.565 6.565 24 C -0.211 4.211 25 C -0.149 4.149 26 H 0.261 0.739 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.399 0.601 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.373 0.627 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -9.777 -13.382 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.040 3.960 11 N -0.353 5.353 12 C 0.290 3.710 13 O -0.438 6.438 14 C -0.175 4.175 15 C -0.077 4.077 16 H 0.101 0.899 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.187 4.187 21 C 0.049 3.951 22 H 0.072 0.928 23 O -0.370 6.370 24 C -0.248 4.248 25 C -0.187 4.187 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.220 0.780 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.513 -9.640 -13.069 17.150 hybrid contribution 1.281 0.969 -0.293 1.633 sum 6.794 -8.671 -13.362 17.318 Atomic orbital electron populations 1.69981 1.05896 1.26895 1.48272 1.24983 0.94791 0.98924 0.94317 0.86638 0.79952 0.83570 0.78136 1.20685 1.21162 1.19807 1.20341 0.92817 0.88639 1.51984 0.92216 1.19040 0.98538 0.93908 0.85803 1.20961 0.87470 0.96784 0.90769 1.46009 1.11324 1.60062 1.17913 1.20555 0.90440 0.77847 0.82197 1.90604 1.23036 1.55857 1.74281 1.21659 0.97634 1.02204 0.96011 1.20822 0.94956 0.98776 0.93136 0.89888 1.21733 1.00863 0.96999 0.96207 1.21546 0.97373 1.00589 0.96207 1.21508 0.97538 0.98353 0.98108 1.22251 1.00313 0.99353 0.96801 1.21907 0.92554 0.89881 0.90751 0.92789 1.86556 1.45743 1.59535 1.45196 1.23022 0.98643 0.95685 1.07457 1.22490 0.92266 1.01071 1.02842 0.92866 0.91084 0.94634 0.76685 0.89540 0.88549 0.88782 0.92529 0.91964 0.91824 0.92021 0.92049 0.92082 0.91139 0.78041 0.91651 0.90377 0.89856 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.34 12.91 55.43 0.72 -23.62 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.50 -12.90 8.63 -34.44 -0.30 -13.19 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 10 C 0.16 3.76 5.50 -4.04 -0.02 3.74 16 11 N -0.70 -13.86 5.47 -60.29 -0.33 -14.19 16 12 C 0.50 9.41 7.54 -10.99 -0.08 9.33 16 13 O -0.56 -12.12 13.97 5.56 0.08 -12.04 16 14 C -0.13 -1.93 5.10 -27.88 -0.14 -2.07 16 15 C -0.06 -0.77 1.58 -90.62 -0.14 -0.92 16 16 H 0.08 1.28 7.95 -51.92 -0.41 0.86 16 17 C -0.12 -1.60 4.94 -26.73 -0.13 -1.74 16 18 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C -0.15 -1.35 5.55 -26.71 -0.15 -1.50 16 21 C 0.11 1.13 2.90 -26.71 -0.08 1.05 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 O -0.57 -5.94 12.56 -35.23 -0.44 -6.39 16 24 C -0.21 -4.44 9.96 -26.69 -0.27 -4.70 16 25 C -0.15 -3.43 9.42 -26.69 -0.25 -3.68 16 26 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 27 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 28 H 0.04 0.82 8.09 -51.93 -0.42 0.39 16 29 H 0.40 7.22 8.37 -40.82 -0.34 6.87 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.31 7.54 -51.93 -0.39 0.92 16 32 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.37 2.26 9.08 45.56 0.41 2.67 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -29.87 352.63 -8.80 -38.68 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.93 Total: 10.81 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.19 Total: -14.07 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.39 Total: -37.82 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.36 Total: -18.42 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.87 -8.80 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568407347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.987 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds