Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48505 * 109.47181 * 239.99623 * 3 2 1 5 5 H 1.48498 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47226 * 120.00187 * 3 2 1 7 7 C 1.37872 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.53118 * 109.52372 * 180.02562 * 9 7 2 11 11 C 1.53043 * 109.28115 * 177.62452 * 10 9 7 12 12 N 1.46850 * 109.51907 * 300.81929 * 11 10 9 13 13 C 1.46903 * 110.99887 * 185.83343 * 12 11 10 14 14 C 1.52994 * 109.47125 * 170.00081 * 13 12 11 15 15 C 1.52997 * 109.47209 * 185.21792 * 14 13 12 16 16 C 1.50701 * 112.84823 * 62.55659 * 15 14 13 17 17 O 1.20822 * 119.99821 * 240.21978 * 16 15 14 18 18 O 1.34228 * 120.00007 * 60.22598 * 16 15 14 19 19 C 1.53782 * 113.61527 * 193.75149 * 15 14 13 20 20 C 1.53959 * 87.01977 * 89.22920 * 19 15 14 21 21 C 1.53783 * 113.61636 * 291.35987 * 15 14 13 22 22 C 1.46850 * 111.19743 * 61.74131 * 12 11 10 23 23 C 1.53041 * 109.52409 * 298.25569 * 22 12 11 24 24 H 0.97003 * 120.00303 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.52396 * 59.87663 * 9 7 2 26 26 H 1.09001 * 109.50674 * 57.68333 * 10 9 7 27 27 H 1.09000 * 109.53824 * 297.58532 * 10 9 7 28 28 H 1.08992 * 109.46269 * 180.80338 * 11 10 9 29 29 H 1.08997 * 109.44848 * 60.82735 * 11 10 9 30 30 H 1.08996 * 109.46596 * 50.00377 * 13 12 11 31 31 H 1.08998 * 109.47172 * 290.00379 * 13 12 11 32 32 H 1.09008 * 109.47246 * 65.21703 * 14 13 12 33 33 H 1.08999 * 109.47340 * 305.22135 * 14 13 12 34 34 H 0.96702 * 117.00173 * 180.02562 * 18 16 15 35 35 H 1.09002 * 113.61780 * 203.74746 * 19 15 14 36 36 H 1.09000 * 113.61679 * 334.65348 * 19 15 14 37 37 H 1.08996 * 113.53679 * 270.81371 * 20 19 15 38 38 H 1.09004 * 113.74206 * 139.94124 * 20 19 15 39 39 H 1.09006 * 113.60815 * 25.34794 * 21 15 14 40 40 H 1.08994 * 113.61486 * 156.16209 * 21 15 14 41 41 H 1.09000 * 109.46416 * 58.27483 * 22 12 11 42 42 H 1.09002 * 109.46585 * 178.23695 * 22 12 11 43 43 H 1.08997 * 109.49999 * 299.24006 * 23 22 12 44 44 H 1.09004 * 109.50256 * 179.12224 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4753 -4.9851 0.0593 12 7 0.6535 -5.0195 1.2759 13 6 0.0071 -6.3288 1.4377 14 6 -0.6315 -6.4142 2.8253 15 6 -1.1912 -7.8213 3.0434 16 6 -0.1246 -8.8857 3.0184 17 8 -0.1726 -9.7698 2.1963 18 8 0.8786 -8.8516 3.9096 19 6 -2.1390 -7.9272 4.2498 20 6 -3.2811 -7.5674 3.2820 21 6 -2.4057 -8.1454 2.1575 22 6 -0.3403 -3.9384 1.2761 23 6 0.3754 -2.5858 1.2525 24 1 -0.4851 0.8400 -0.0004 25 1 0.6222 -2.5566 -0.8889 26 1 2.8992 -3.5840 0.8678 27 1 2.8436 -3.6322 -0.9110 28 1 2.1806 -5.8160 0.0739 29 1 0.8318 -5.0702 -0.8162 30 1 0.7521 -7.1173 1.3313 31 1 -0.7624 -6.4507 0.6754 32 1 -1.4396 -5.6863 2.8989 33 1 0.1203 -6.2004 3.5851 34 1 1.5393 -9.5555 3.8541 35 1 -2.2144 -8.9348 4.6588 36 1 -1.9589 -7.1714 5.0142 37 1 -3.4545 -6.4950 3.1929 38 1 -4.1975 -8.1315 3.4556 39 1 -2.4404 -7.5654 1.2352 40 1 -2.5532 -9.2126 1.9921 41 1 -0.9753 -4.0287 0.3948 42 1 -0.9537 -4.0091 2.1743 43 1 1.0000 -2.4892 2.1405 44 1 -0.3627 -1.7839 1.2369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = -85.913309 kcal Electronic energy + Delta-G solvation = -22912.436690 eV Core-core repulsion = 19636.469911 eV Total energy + Delta-G solvation = -3275.966779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11055 -38.76027 -37.98532 -36.16482 -34.21583 -31.98698 -29.89879 -29.77955 -26.84144 -25.90796 -25.17577 -22.93480 -22.17189 -21.94967 -20.81698 -18.90488 -18.58300 -17.90892 -16.99641 -16.39943 -16.06424 -15.30083 -15.03854 -14.67357 -14.45796 -14.04691 -13.72036 -13.39108 -12.95132 -12.72061 -12.64522 -12.49005 -12.29521 -12.14717 -11.69959 -11.53309 -11.41061 -11.28893 -11.02273 -10.91244 -10.78068 -10.63184 -10.51660 -10.32877 -10.21747 -10.17809 -9.94755 -9.38810 -8.93663 -8.68019 -8.26823 -7.74410 -5.95013 -4.00189 2.07706 2.92292 3.34440 3.38788 3.41870 4.03273 4.18565 4.35596 4.47214 4.53279 4.72546 5.06471 5.14299 5.33935 5.35656 5.38396 5.48269 5.49857 5.65192 5.69081 5.70787 5.77018 5.87882 5.90972 6.01870 6.13179 6.14760 6.20492 6.30372 6.33452 6.37164 6.63421 6.65727 6.88195 7.10383 7.18903 7.45615 7.63794 7.70524 7.78333 7.85454 8.07626 8.18121 8.50972 9.03212 9.64032 11.11169 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.003629 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.832526 B = 7714.388327 C = 8151.301829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.534 5.534 13 C 0.055 3.945 14 C -0.090 4.090 15 C -0.076 4.076 16 C 0.496 3.504 17 O -0.519 6.519 18 O -0.510 6.510 19 C -0.120 4.120 20 C -0.140 4.140 21 C -0.119 4.119 22 C 0.055 3.945 23 C -0.104 4.104 24 H 0.259 0.741 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 -16.417 7.967 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.259 5.259 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.077 4.077 16 C 0.338 3.662 17 O -0.407 6.407 18 O -0.321 6.321 19 C -0.157 4.157 20 C -0.177 4.177 21 C -0.156 4.156 22 C -0.072 4.072 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.898 -16.131 8.154 18.726 hybrid contribution 0.464 0.202 -0.794 0.941 sum -4.435 -15.929 7.360 18.099 Atomic orbital electron populations 1.69865 1.05859 1.26373 1.51098 1.24957 0.94830 0.98956 0.95208 0.86699 0.79628 0.83326 0.78565 1.20405 1.21381 1.20307 1.21179 0.92851 0.90700 1.50148 0.92827 1.18679 0.92710 0.91713 0.93985 1.21679 0.98708 0.93703 1.00287 1.22109 0.95694 0.99271 0.89623 1.62009 1.23605 1.01817 1.38434 1.22033 0.97029 0.92669 0.95610 1.21424 1.01234 0.91356 0.98709 1.21981 0.90788 0.94101 1.00879 1.23362 0.80822 0.85072 0.76902 1.90695 1.75587 1.36956 1.37467 1.84585 1.36740 1.54906 1.55881 1.22974 0.94379 1.02713 0.95683 1.22876 0.97095 1.01934 0.95795 1.22995 0.92356 1.02435 0.97836 1.22331 0.93137 0.93118 0.98635 1.21660 1.00179 0.92994 0.99391 0.93079 0.96200 0.92472 0.93224 0.92623 0.95838 0.92110 0.95110 0.89907 0.89383 0.73568 0.89795 0.89796 0.89249 0.90725 0.90144 0.89032 0.96013 0.92447 0.93814 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.37 55.43 0.63 -24.74 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 11 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 12 N -0.53 -9.53 4.66 -234.67 -1.09 -10.62 16 13 C 0.05 0.81 4.68 -3.83 -0.02 0.79 16 14 C -0.09 -1.10 4.37 -26.74 -0.12 -1.22 16 15 C -0.08 -0.81 0.89 -154.85 -0.14 -0.95 16 16 C 0.50 5.93 6.28 36.01 0.23 6.15 16 17 O -0.52 -7.52 16.80 -18.75 -0.31 -7.83 16 18 O -0.51 -5.06 13.42 -39.25 -0.53 -5.59 16 19 C -0.12 -1.03 7.23 -25.82 -0.19 -1.21 16 20 C -0.14 -1.15 7.74 -25.82 -0.20 -1.35 16 21 C -0.12 -1.20 6.78 -25.92 -0.18 -1.37 16 22 C 0.05 1.06 5.29 -3.83 -0.02 1.04 16 23 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.91 7.16 -51.93 -0.37 0.54 16 31 H 0.03 0.46 7.08 -51.93 -0.37 0.09 16 32 H 0.08 0.99 5.84 -51.92 -0.30 0.68 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.41 2.33 9.10 45.56 0.41 2.74 16 35 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.09 0.73 7.60 -51.93 -0.39 0.34 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.85 7.02 -51.93 -0.36 0.49 16 40 H 0.09 0.95 7.61 -51.93 -0.40 0.55 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.99 6.32 -51.93 -0.33 0.66 16 43 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -30.69 341.60 -9.31 -39.99 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.61 Total: 1.13 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.52 Total: -13.79 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.46 Total: -35.36 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.84 Total: -13.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.69 -9.31 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.922 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds