Wall clock time and date at job start Tue Mar 31 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 119.99800 * 2 1 4 4 H 1.48495 * 109.46727 * 269.99546 * 3 2 1 5 5 H 1.48494 * 109.46851 * 29.99348 * 3 2 1 6 6 H 1.48495 * 109.46913 * 149.99683 * 3 2 1 7 7 C 1.37876 * 120.00485 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99733 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00253 * 169.99787 * 10 9 7 12 12 C 1.52992 * 109.47525 * 287.59977 * 11 10 9 13 13 C 1.52995 * 109.47612 * 173.65733 * 12 11 10 14 14 C 1.50702 * 112.85248 * 54.88773 * 13 12 11 15 15 O 1.20825 * 120.00185 * 112.52708 * 14 13 12 16 16 O 1.34224 * 119.99934 * 292.53878 * 14 13 12 17 17 C 1.53787 * 113.61521 * 283.58370 * 13 12 11 18 18 C 1.53780 * 87.08063 * 220.01619 * 17 13 12 19 19 C 1.53782 * 87.08264 * 25.43302 * 18 17 13 20 20 C 1.46907 * 111.00260 * 293.95418 * 10 9 7 21 21 C 1.52996 * 109.47401 * 169.07413 * 20 10 9 22 22 C 1.52996 * 117.49995 * 115.99481 * 21 20 10 23 23 C 1.53000 * 117.49917 * 184.65719 * 21 20 10 24 24 H 0.97000 * 120.00539 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46860 * 59.99354 * 9 7 2 26 26 H 1.09002 * 109.47223 * 299.99747 * 9 7 2 27 27 H 1.09005 * 109.46971 * 47.60113 * 11 10 9 28 28 H 1.09000 * 109.47428 * 167.59485 * 11 10 9 29 29 H 1.09008 * 109.47315 * 293.65695 * 12 11 10 30 30 H 1.09001 * 109.47305 * 53.65352 * 12 11 10 31 31 H 0.96707 * 117.00356 * 179.97438 * 16 14 13 32 32 H 1.09002 * 113.61128 * 334.56603 * 17 13 12 33 33 H 1.09001 * 113.61358 * 105.46229 * 17 13 12 34 34 H 1.08998 * 113.61284 * 270.87722 * 18 17 13 35 35 H 1.09001 * 113.61016 * 139.98408 * 18 17 13 36 36 H 1.08992 * 113.61044 * 220.01786 * 19 18 17 37 37 H 1.09002 * 113.61444 * 89.11200 * 19 18 17 38 38 H 1.08996 * 109.46818 * 49.07333 * 20 10 9 39 39 H 1.08997 * 109.46876 * 289.07590 * 20 10 9 40 40 H 1.09004 * 115.54701 * 330.32764 * 21 20 10 41 41 H 1.08999 * 117.49931 * 215.00562 * 22 21 20 42 42 H 1.09000 * 117.50081 * 0.02562 * 22 21 20 43 43 H 1.08999 * 117.49587 * 359.97393 * 23 21 20 44 44 H 1.09002 * 117.49972 * 144.99873 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 1.0836 -4.9725 1.7026 13 6 0.2350 -6.2279 1.9141 14 6 0.9335 -7.4879 1.4718 15 8 1.2679 -8.3122 2.2895 16 8 1.1845 -7.6942 0.1695 17 6 -1.2013 -6.0978 1.3802 18 6 -1.6542 -6.8545 2.6400 19 6 -0.3803 -6.3259 3.3201 20 6 2.9710 -3.6540 -1.2528 21 6 4.1293 -4.6438 -1.1131 22 6 4.1163 -5.8784 -2.0166 23 6 5.1143 -4.7478 -2.2792 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5568 0.8903 27 1 0.6455 -4.9624 -0.4066 28 1 2.2010 -5.7164 0.0178 29 1 1.9643 -5.0171 2.3433 30 1 0.4956 -4.0899 1.9542 31 1 1.6351 -8.5169 -0.0659 32 1 -1.5593 -5.0692 1.3364 33 1 -1.3746 -6.6471 0.4549 34 1 -1.6668 -7.9376 2.5179 35 1 -2.5750 -6.4660 3.0753 36 1 0.1091 -7.0594 3.9607 37 1 -0.5139 -5.3596 3.8065 38 1 3.3657 -2.6610 -1.4680 39 1 2.3191 -3.9701 -2.0671 40 1 4.5279 -4.7616 -0.1054 41 1 4.5065 -6.8085 -1.6034 42 1 3.2829 -5.9853 -2.7108 43 1 4.9368 -4.1113 -3.1461 44 1 6.1610 -4.9341 -2.0388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:09 Heat of formation + Delta-G solvation = -51.909718 kcal Electronic energy + Delta-G solvation = -23139.808065 eV Core-core repulsion = 19865.315792 eV Total energy + Delta-G solvation = -3274.492273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96346 -38.25450 -37.72876 -36.06290 -35.45530 -32.61962 -30.91669 -27.42299 -26.47347 -25.71757 -24.34137 -23.12751 -22.14605 -21.63170 -20.39711 -19.48426 -19.26398 -17.80192 -16.57697 -16.17858 -15.94283 -15.28465 -14.96703 -14.56369 -14.38300 -14.03601 -13.86814 -13.60830 -13.30662 -12.63385 -12.43368 -12.37555 -12.06534 -11.78959 -11.67942 -11.48528 -11.27248 -11.10019 -11.04044 -10.90202 -10.78195 -10.66572 -10.41430 -10.27293 -10.18712 -10.06595 -9.99321 -9.54615 -9.45869 -9.09998 -8.42101 -7.19844 -6.02492 -4.03122 2.24581 3.04542 3.31778 3.38340 3.42878 4.13342 4.34885 4.43745 4.55756 4.72300 4.79701 4.97041 5.16799 5.27692 5.31535 5.34303 5.41387 5.62642 5.71328 5.75983 5.79879 5.82652 5.87674 5.91127 5.93296 6.01657 6.10649 6.14851 6.26559 6.31777 6.34279 6.37214 6.49958 6.50884 6.60079 6.71286 6.84600 7.31830 7.38044 7.82941 7.95036 8.12467 8.25040 8.58544 9.05193 9.61186 11.08253 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.005673 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.832338 B = 4934.356669 C = 6594.086524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.536 5.536 11 C 0.057 3.943 12 C -0.095 4.095 13 C -0.082 4.082 14 C 0.511 3.489 15 O -0.521 6.521 16 O -0.504 6.504 17 C -0.120 4.120 18 C -0.148 4.148 19 C -0.118 4.118 20 C 0.095 3.905 21 C -0.134 4.134 22 C -0.188 4.188 23 C -0.185 4.185 24 H 0.260 0.740 25 H -0.011 1.011 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.403 0.597 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 -14.225 0.343 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.260 5.260 11 C -0.071 4.071 12 C -0.133 4.133 13 C -0.083 4.083 14 C 0.353 3.647 15 O -0.410 6.410 16 O -0.315 6.315 17 C -0.157 4.157 18 C -0.185 4.185 19 C -0.155 4.155 20 C -0.033 4.033 21 C -0.152 4.152 22 C -0.225 4.225 23 C -0.222 4.222 24 H 0.070 0.930 25 H 0.007 0.993 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.261 0.739 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.815 -13.871 1.058 13.935 hybrid contribution 0.192 0.224 -0.887 0.935 sum 1.007 -13.646 0.171 13.684 Atomic orbital electron populations 1.69948 1.06018 1.26697 1.51195 1.24969 0.94830 0.99214 0.95515 0.86546 0.79887 0.83279 0.78012 1.20804 1.21309 1.19777 1.21196 0.93533 0.90018 1.49782 0.91866 1.19747 0.90126 0.87371 0.96047 1.62041 1.27882 1.02863 1.33245 1.22055 0.97163 0.93452 0.94455 1.21545 0.99233 0.94106 0.98389 1.21693 0.96106 0.91518 0.99004 1.22835 0.75145 0.86994 0.79686 1.90669 1.50119 1.46079 1.54110 1.84657 1.72994 1.46030 1.27801 1.23020 0.92266 1.02519 0.97929 1.22936 0.98389 0.99950 0.97238 1.22957 0.95594 1.02803 0.94133 1.21526 0.92506 0.98675 0.90617 1.22442 0.99291 0.98023 0.95481 1.23005 1.02070 0.93174 1.04269 1.22914 0.95715 1.02563 1.01024 0.92991 0.99336 0.94865 0.95556 0.91166 0.91150 0.89259 0.73866 0.88063 0.90854 0.90557 0.90679 0.90112 0.88319 0.89399 0.96206 0.87620 0.89688 0.89276 0.89072 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.89 8.36 -34.44 -0.29 -14.18 16 8 H 0.06 1.73 7.19 -52.49 -0.38 1.35 16 9 C 0.19 4.82 4.57 -4.98 -0.02 4.80 16 10 N -0.54 -11.17 4.44 -236.08 -1.05 -12.22 16 11 C 0.06 1.00 3.94 -3.83 -0.02 0.99 16 12 C -0.09 -1.53 4.82 -26.74 -0.13 -1.66 16 13 C -0.08 -1.11 0.93 -154.85 -0.14 -1.26 16 14 C 0.51 7.05 6.60 36.01 0.24 7.29 16 15 O -0.52 -8.27 16.72 -18.75 -0.31 -8.58 16 16 O -0.50 -5.83 11.27 -39.24 -0.44 -6.27 16 17 C -0.12 -1.49 6.92 -25.92 -0.18 -1.67 16 18 C -0.15 -1.63 7.80 -25.92 -0.20 -1.84 16 19 C -0.12 -1.44 7.11 -25.92 -0.18 -1.62 16 20 C 0.10 1.83 5.09 -3.82 -0.02 1.81 16 21 C -0.13 -2.11 4.72 -90.62 -0.43 -2.54 16 22 C -0.19 -2.48 9.98 -26.69 -0.27 -2.74 16 23 C -0.18 -2.48 10.25 -26.69 -0.27 -2.75 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 26 H 0.03 0.87 6.34 -51.93 -0.33 0.55 16 27 H 0.03 0.48 7.78 -51.93 -0.40 0.08 16 28 H 0.07 1.15 5.08 -51.93 -0.26 0.89 16 29 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 30 H 0.09 1.57 6.37 -51.93 -0.33 1.24 16 31 H 0.40 2.87 9.10 45.56 0.41 3.29 16 32 H 0.10 1.32 8.05 -51.93 -0.42 0.90 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.03 7.35 -51.93 -0.38 0.65 16 37 H 0.10 1.14 8.10 -51.93 -0.42 0.71 16 38 H 0.09 1.87 6.63 -51.93 -0.34 1.52 16 39 H 0.02 0.38 7.85 -51.93 -0.41 -0.02 16 40 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.17 8.03 -51.93 -0.42 0.75 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -30.78 352.54 -9.40 -40.18 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.62 Total: 4.55 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.01 Total: -13.93 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.31 Total: -37.63 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.76 Total: -14.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.78 -9.40 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.728 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds