Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48495 * 109.47366 * 240.00057 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46983 * 119.99859 * 3 2 1 7 7 C 1.37872 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00528 * 195.42302 * 7 2 1 9 9 C 1.50704 * 119.99838 * 15.42122 * 7 2 1 10 10 C 1.52993 * 115.55343 * 39.16768 * 9 7 2 11 11 N 1.46898 * 109.47126 * 83.41938 * 10 9 7 12 12 C 1.46904 * 110.99829 * 184.86231 * 11 10 9 13 13 H 1.08997 * 109.47076 * 327.74108 * 12 11 10 14 14 C 1.50699 * 109.47143 * 87.74492 * 12 11 10 15 15 O 1.20822 * 120.00540 * 359.97438 * 14 12 11 16 16 O 1.34234 * 119.99703 * 179.97438 * 14 12 11 17 17 C 1.53002 * 109.46885 * 207.74546 * 12 11 10 18 18 C 1.53008 * 109.46914 * 295.03634 * 17 12 11 19 19 C 1.53001 * 109.46687 * 180.02562 * 18 17 12 20 20 C 1.52997 * 109.47738 * 59.99904 * 19 18 17 21 21 C 1.52994 * 109.47034 * 299.99902 * 20 19 18 22 22 C 1.52997 * 109.47312 * 59.99880 * 21 20 19 23 23 C 1.53001 * 117.49645 * 184.83753 * 9 7 2 24 24 C 1.53000 * 60.03301 * 107.49900 * 23 9 7 25 25 H 0.96999 * 119.99580 * 4.94905 * 1 2 3 26 26 H 1.08994 * 109.47427 * 203.42790 * 10 9 7 27 27 H 1.09004 * 109.46670 * 323.42333 * 10 9 7 28 28 H 1.00895 * 110.99985 * 60.90853 * 11 10 9 29 29 H 0.96704 * 116.99654 * 179.97438 * 16 14 12 30 30 H 1.08999 * 109.47518 * 55.03417 * 17 12 11 31 31 H 1.09004 * 109.46844 * 299.99704 * 18 17 12 32 32 H 1.08993 * 109.47041 * 60.00366 * 18 17 12 33 33 H 1.09004 * 109.46825 * 299.99211 * 19 18 17 34 34 H 1.09002 * 109.46440 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47359 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.46668 * 60.00055 * 20 19 18 37 37 H 1.08996 * 109.47325 * 299.99881 * 21 20 19 38 38 H 1.09000 * 109.47618 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47625 * 180.02562 * 22 21 20 40 40 H 1.09007 * 109.47362 * 59.99850 * 22 21 20 41 41 H 1.09000 * 117.49718 * 214.99892 * 23 9 7 42 42 H 1.08994 * 117.50065 * 359.97438 * 23 9 7 43 43 H 1.09007 * 117.49834 * 107.49936 * 24 23 9 44 44 H 1.08995 * 117.50391 * 252.52226 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0554 -1.2110 0.2482 9 6 1.2917 -2.4755 -0.3482 10 6 0.2703 -2.3756 -1.4828 11 7 0.9605 -2.4891 -2.7745 12 6 0.0273 -2.2825 -3.8900 13 1 -0.9600 -2.6503 -3.6107 14 6 -0.0563 -0.8121 -4.2093 15 8 0.5944 -0.0176 -3.5726 16 8 -0.8536 -0.3849 -5.2010 17 6 0.5260 -3.0439 -5.1198 18 6 1.8546 -2.4451 -5.5862 19 6 2.3529 -3.2062 -6.8164 20 6 1.3201 -3.0926 -7.9395 21 6 -0.0083 -3.6914 -7.4731 22 6 -0.5068 -2.9304 -6.2430 23 6 2.0813 -3.7798 -0.2213 24 6 0.9866 -3.4473 0.7945 25 1 -0.4849 0.8369 -0.0725 26 1 -0.4581 -3.1809 -1.3879 27 1 -0.2413 -1.4146 -1.4274 28 1 1.4306 -3.3781 -2.8563 29 1 -0.8743 0.5673 -5.3684 30 1 0.6706 -4.0934 -4.8635 31 1 1.7099 -1.3956 -5.8426 32 1 2.5902 -2.5257 -4.7861 33 1 2.4974 -4.2558 -6.5604 34 1 3.2996 -2.7799 -7.1484 35 1 1.6754 -3.6344 -8.8160 36 1 1.1757 -2.0430 -8.1955 37 1 0.1361 -4.7409 -7.2171 38 1 -0.7443 -3.6101 -8.2730 39 1 -1.4530 -3.3571 -5.9104 40 1 -0.6513 -1.8807 -6.4990 41 1 1.8730 -4.5668 -0.9462 42 1 3.1164 -3.7111 0.1132 43 1 0.0580 -4.0154 0.7379 44 1 1.3013 -3.1593 1.7975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = -80.416096 kcal Electronic energy + Delta-G solvation = -23790.545688 eV Core-core repulsion = 20514.817286 eV Total energy + Delta-G solvation = -3275.728402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18765 -38.14659 -36.98494 -35.52616 -34.33746 -31.98601 -30.89337 -30.59793 -26.58796 -25.43558 -23.93239 -22.51330 -22.23444 -21.12777 -20.22930 -19.50592 -18.83799 -17.37682 -16.37556 -16.08725 -15.42902 -14.87191 -14.59552 -14.33789 -14.26904 -13.94923 -13.71668 -13.44275 -13.12003 -13.05676 -12.60283 -12.13848 -11.91360 -11.84152 -11.37873 -11.23832 -11.14890 -11.04245 -10.75042 -10.71958 -10.43878 -10.38970 -10.29652 -10.11531 -10.02980 -9.93827 -9.75016 -9.17223 -9.00860 -8.59942 -7.86318 -7.55245 -5.91843 -3.87422 2.93654 3.44248 3.46239 3.50342 3.58853 4.56549 4.59896 4.71378 4.79252 4.93478 5.18520 5.20620 5.30540 5.42535 5.51557 5.54547 5.59493 5.70413 5.71363 5.77244 5.79663 5.93578 6.05771 6.16005 6.17596 6.19250 6.31480 6.32573 6.41351 6.53248 6.58037 6.63664 6.71711 6.77110 6.96237 7.04867 7.09996 7.38399 7.73792 7.91695 8.07124 8.23996 8.59616 8.61916 9.05038 9.72518 11.14296 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.005919 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.844383 B = 4729.650662 C = 5340.413068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.085 3.915 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.473 4.473 8 H 0.055 0.945 9 C 0.070 3.930 10 C 0.086 3.914 11 N -0.651 5.651 12 C 0.108 3.892 13 H 0.070 0.930 14 C 0.469 3.531 15 O -0.463 6.463 16 O -0.529 6.529 17 C -0.081 4.081 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.258 0.742 26 H -0.008 1.008 27 H 0.126 0.874 28 H 0.336 0.664 29 H 0.396 0.604 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -6.489 -15.089 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.117 4.117 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.069 3.931 10 C -0.041 4.041 11 N -0.284 5.284 12 C -0.004 4.004 13 H 0.087 0.913 14 C 0.307 3.693 15 O -0.345 6.345 16 O -0.342 6.342 17 C -0.099 4.099 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.248 4.248 24 C -0.244 4.244 25 H 0.068 0.932 26 H 0.010 0.990 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.254 0.746 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.722 -5.888 -14.725 15.952 hybrid contribution -0.090 0.589 -0.006 0.596 sum -1.812 -5.300 -14.731 15.759 Atomic orbital electron populations 1.69847 1.06140 1.26705 1.48749 1.24717 0.94533 0.98694 0.93797 0.86718 0.79879 0.83435 0.78246 1.19984 1.21683 1.20855 1.20316 0.94894 0.90046 1.45680 0.92648 1.18827 0.94315 0.88363 0.91597 1.21961 0.94004 1.02605 0.85540 1.59842 1.29432 1.38325 1.00812 1.20985 0.97520 0.88321 0.93600 0.91262 1.23534 0.76384 0.92694 0.76683 1.90813 1.40422 1.55959 1.47313 1.84580 1.64846 1.31584 1.53174 1.21296 0.96101 0.99213 0.93339 1.21575 0.96652 0.99107 0.97695 1.21534 0.98063 1.00509 0.95442 1.21542 0.95472 1.00977 0.97709 1.21500 0.96786 0.99447 0.97600 1.21799 0.97338 1.02746 0.94320 1.22779 0.96225 1.02320 1.03467 1.23017 0.97339 1.07703 0.96324 0.93205 0.99018 0.85614 0.84396 0.74626 0.90328 0.92348 0.90261 0.92122 0.92204 0.92557 0.92139 0.92367 0.92294 0.92170 0.89303 0.91984 0.90718 0.92102 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 11.00 55.43 0.61 -24.74 16 2 C 0.08 2.42 5.13 -17.82 -0.09 2.33 16 3 Si 0.89 22.85 29.57 -169.99 -5.03 17.83 16 4 H -0.27 -7.22 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.47 -13.37 9.00 -34.44 -0.31 -13.68 16 8 H 0.06 1.58 7.86 -52.49 -0.41 1.17 16 9 C 0.07 1.75 1.93 -155.62 -0.30 1.45 16 10 C 0.09 2.02 5.11 -3.83 -0.02 2.00 16 11 N -0.65 -12.97 5.25 -107.96 -0.57 -13.54 16 12 C 0.11 1.81 2.34 -68.86 -0.16 1.65 16 13 H 0.07 1.14 7.81 -51.93 -0.41 0.74 16 14 C 0.47 8.57 6.01 36.01 0.22 8.79 16 15 O -0.46 -10.81 17.01 -18.75 -0.32 -11.13 16 16 O -0.53 -7.35 10.56 -39.27 -0.41 -7.77 16 17 C -0.08 -1.05 1.86 -90.61 -0.17 -1.22 16 18 C -0.11 -1.52 4.77 -26.73 -0.13 -1.65 16 19 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 20 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 21 C -0.12 -1.12 5.92 -26.74 -0.16 -1.27 16 22 C -0.12 -1.41 4.84 -26.73 -0.13 -1.54 16 23 C -0.21 -4.56 9.54 -26.73 -0.25 -4.82 16 24 C -0.21 -4.76 9.89 -26.69 -0.26 -5.03 16 25 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 26 H -0.01 -0.18 7.92 -51.93 -0.41 -0.59 16 27 H 0.13 3.39 5.13 -51.93 -0.27 3.12 16 28 H 0.34 6.02 7.59 -39.29 -0.30 5.72 16 29 H 0.40 4.12 9.10 45.56 0.41 4.53 16 30 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 31 H 0.06 0.87 7.08 -51.93 -0.37 0.50 16 32 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.08 5.45 -51.93 -0.28 0.79 16 41 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 42 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 43 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 44 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -31.56 344.11 -9.23 -40.79 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.62 Total: 9.14 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.08 Total: -15.76 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.04 Total: -38.28 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.73 Total: -18.90 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.56 -9.23 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.630 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds