Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48495 * 109.47366 * 240.00057 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46983 * 119.99859 * 3 2 1 7 7 C 1.37872 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00528 * 195.42302 * 7 2 1 9 9 C 1.50704 * 119.99838 * 15.42122 * 7 2 1 10 10 C 1.52993 * 115.55343 * 39.16768 * 9 7 2 11 11 N 1.46898 * 109.47126 * 83.41938 * 10 9 7 12 12 C 1.46904 * 110.99829 * 184.86231 * 11 10 9 13 13 H 1.08997 * 109.47076 * 327.74108 * 12 11 10 14 14 C 1.50699 * 109.47143 * 87.74492 * 12 11 10 15 15 O 1.20822 * 120.00540 * 359.97438 * 14 12 11 16 16 O 1.34234 * 119.99703 * 179.97438 * 14 12 11 17 17 C 1.53002 * 109.46885 * 207.74546 * 12 11 10 18 18 C 1.53008 * 109.46914 * 295.03634 * 17 12 11 19 19 C 1.53001 * 109.46687 * 180.02562 * 18 17 12 20 20 C 1.52997 * 109.47738 * 59.99904 * 19 18 17 21 21 C 1.52994 * 109.47034 * 299.99902 * 20 19 18 22 22 C 1.52997 * 109.47312 * 59.99880 * 21 20 19 23 23 C 1.53001 * 117.49645 * 184.83753 * 9 7 2 24 24 C 1.53000 * 60.03301 * 107.49900 * 23 9 7 25 25 H 0.96999 * 119.99580 * 4.94905 * 1 2 3 26 26 H 1.08994 * 109.47427 * 203.42790 * 10 9 7 27 27 H 1.09004 * 109.46670 * 323.42333 * 10 9 7 28 28 H 1.00895 * 110.99985 * 60.90853 * 11 10 9 29 29 H 0.96704 * 116.99654 * 179.97438 * 16 14 12 30 30 H 1.08999 * 109.47518 * 55.03417 * 17 12 11 31 31 H 1.09004 * 109.46844 * 299.99704 * 18 17 12 32 32 H 1.08993 * 109.47041 * 60.00366 * 18 17 12 33 33 H 1.09004 * 109.46825 * 299.99211 * 19 18 17 34 34 H 1.09002 * 109.46440 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47359 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.46668 * 60.00055 * 20 19 18 37 37 H 1.08996 * 109.47325 * 299.99881 * 21 20 19 38 38 H 1.09000 * 109.47618 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47625 * 180.02562 * 22 21 20 40 40 H 1.09007 * 109.47362 * 59.99850 * 22 21 20 41 41 H 1.09000 * 117.49718 * 214.99892 * 23 9 7 42 42 H 1.08994 * 117.50065 * 359.97438 * 23 9 7 43 43 H 1.09007 * 117.49834 * 107.49936 * 24 23 9 44 44 H 1.08995 * 117.50391 * 252.52226 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0554 -1.2110 0.2482 9 6 1.2917 -2.4755 -0.3482 10 6 0.2703 -2.3756 -1.4828 11 7 0.9605 -2.4891 -2.7745 12 6 0.0273 -2.2825 -3.8900 13 1 -0.9600 -2.6503 -3.6107 14 6 -0.0563 -0.8121 -4.2093 15 8 0.5944 -0.0176 -3.5726 16 8 -0.8536 -0.3849 -5.2010 17 6 0.5260 -3.0439 -5.1198 18 6 1.8546 -2.4451 -5.5862 19 6 2.3529 -3.2062 -6.8164 20 6 1.3201 -3.0926 -7.9395 21 6 -0.0083 -3.6914 -7.4731 22 6 -0.5068 -2.9304 -6.2430 23 6 2.0813 -3.7798 -0.2213 24 6 0.9866 -3.4473 0.7945 25 1 -0.4849 0.8369 -0.0725 26 1 -0.4581 -3.1809 -1.3879 27 1 -0.2413 -1.4146 -1.4274 28 1 1.4306 -3.3781 -2.8563 29 1 -0.8743 0.5673 -5.3684 30 1 0.6706 -4.0934 -4.8635 31 1 1.7099 -1.3956 -5.8426 32 1 2.5902 -2.5257 -4.7861 33 1 2.4974 -4.2558 -6.5604 34 1 3.2996 -2.7799 -7.1484 35 1 1.6754 -3.6344 -8.8160 36 1 1.1757 -2.0430 -8.1955 37 1 0.1361 -4.7409 -7.2171 38 1 -0.7443 -3.6101 -8.2730 39 1 -1.4530 -3.3571 -5.9104 40 1 -0.6513 -1.8807 -6.4990 41 1 1.8730 -4.5668 -0.9462 42 1 3.1164 -3.7111 0.1132 43 1 0.0580 -4.0154 0.7379 44 1 1.3013 -3.1593 1.7975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = -99.992005 kcal Electronic energy + Delta-G solvation = -23791.394563 eV Core-core repulsion = 20514.817286 eV Total energy + Delta-G solvation = -3276.577277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51996 -39.29351 -38.69043 -36.94241 -35.75303 -34.11074 -32.06798 -31.53390 -28.01670 -27.41601 -25.59438 -23.53563 -23.27214 -22.86841 -21.41414 -20.81304 -20.51728 -18.76060 -18.23604 -17.36200 -16.87252 -16.64111 -16.12898 -15.82824 -15.54241 -15.07137 -14.89677 -14.82954 -14.64276 -14.50868 -13.97867 -13.58079 -13.24502 -12.99590 -12.86364 -12.81918 -12.71143 -12.50225 -12.36924 -12.13626 -12.11696 -12.01448 -11.76752 -11.37349 -11.20686 -11.16662 -11.02910 -10.86241 -10.82044 -10.51656 -9.88247 -9.11111 -8.06773 -6.05591 1.35721 1.42455 1.48543 1.50496 2.17580 2.47684 3.07451 3.30836 3.66115 3.77639 3.83141 3.98164 4.20778 4.35017 4.38031 4.44257 4.48745 4.54396 4.60535 4.65298 4.71968 4.73177 4.75911 4.85875 4.93593 4.98014 5.08147 5.15530 5.25947 5.28733 5.30217 5.34812 5.42334 5.45465 5.53312 5.59035 5.67281 5.71576 5.79861 6.11265 6.27942 6.43624 6.76667 6.91150 7.26909 7.54665 8.96587 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.005919 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.844383 B = 4729.650662 C = 5340.413068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.047 3.953 3 Si 0.931 3.069 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.041 0.959 9 C 0.033 3.967 10 C 0.100 3.900 11 N -0.662 5.662 12 C 0.105 3.895 13 H 0.077 0.923 14 C 0.475 3.525 15 O -0.523 6.523 16 O -0.510 6.510 17 C -0.070 4.070 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.182 4.182 24 C -0.205 4.205 25 H 0.254 0.746 26 H 0.002 0.998 27 H 0.091 0.909 28 H 0.347 0.653 29 H 0.413 0.587 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -8.365 -16.910 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.153 4.153 3 Si 0.759 3.241 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.029 4.029 11 N -0.296 5.296 12 C -0.007 4.007 13 H 0.094 0.906 14 C 0.316 3.684 15 O -0.410 6.410 16 O -0.324 6.324 17 C -0.089 4.089 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.219 4.219 24 C -0.244 4.244 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.108 0.892 28 H 0.169 0.831 29 H 0.273 0.727 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.029 -7.774 -16.567 18.412 hybrid contribution -0.007 1.178 0.515 1.286 sum -2.036 -6.596 -16.052 17.473 Atomic orbital electron populations 1.69951 1.06735 1.26663 1.49694 1.25211 0.95156 1.00763 0.94144 0.86050 0.78983 0.81215 0.77881 1.21309 1.21416 1.19686 1.20578 0.94467 0.91984 1.45575 0.94050 1.18932 0.96232 0.88402 0.93243 1.21569 0.93644 1.00944 0.86714 1.59627 1.30335 1.39227 1.00434 1.21156 0.97406 0.87933 0.94183 0.90559 1.23891 0.75371 0.93063 0.76116 1.90795 1.43101 1.57478 1.49632 1.84541 1.63245 1.33218 1.51368 1.21290 0.96136 0.99282 0.92180 1.21512 0.96502 0.98465 0.98287 1.21508 0.98444 1.00622 0.94506 1.21542 0.95262 1.00959 0.97790 1.21485 0.96854 0.99576 0.96964 1.21775 0.97100 1.02607 0.94432 1.22786 0.95588 1.00835 1.02691 1.22979 0.98761 1.07175 0.95462 0.93689 0.98021 0.89168 0.83107 0.72670 0.88550 0.94425 0.92628 0.90949 0.92112 0.90777 0.92816 0.91318 0.90893 0.91409 0.90322 0.88777 0.90882 0.90503 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.76 11.00 21.45 0.24 -52.53 16 2 C 0.05 2.76 5.13 84.65 0.43 3.19 16 3 Si 0.93 47.92 29.57 68.60 2.03 49.95 16 4 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 5 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.49 -28.14 9.00 25.60 0.23 -27.91 16 8 H 0.04 2.41 7.86 -2.91 -0.02 2.39 16 9 C 0.03 1.63 1.93 -52.90 -0.10 1.53 16 10 C 0.10 4.64 5.11 86.30 0.44 5.09 16 11 N -0.66 -26.07 5.25 -495.46 -2.60 -28.67 16 12 C 0.11 3.43 2.34 44.17 0.10 3.53 16 13 H 0.08 2.41 7.81 -2.39 -0.02 2.39 16 14 C 0.47 17.41 6.01 71.24 0.43 17.84 16 15 O -0.52 -25.18 17.01 21.98 0.37 -24.80 16 16 O -0.51 -13.77 10.56 -51.45 -0.54 -14.32 16 17 C -0.07 -1.69 1.86 -10.79 -0.02 -1.71 16 18 C -0.11 -2.86 4.77 30.60 0.15 -2.72 16 19 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 20 C -0.12 -1.95 5.92 30.59 0.18 -1.76 16 21 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 22 C -0.12 -2.42 4.84 30.60 0.15 -2.27 16 23 C -0.18 -7.55 9.54 30.59 0.29 -7.25 16 24 C -0.21 -9.31 9.89 30.62 0.30 -9.01 16 25 H 0.25 14.70 8.32 -92.71 -0.77 13.93 16 26 H 0.00 0.08 7.92 -2.39 -0.02 0.06 16 27 H 0.09 4.95 5.13 -2.38 -0.01 4.94 16 28 H 0.35 11.93 7.59 -89.70 -0.68 11.25 16 29 H 0.41 8.28 9.10 -74.05 -0.67 7.61 16 30 H 0.10 2.02 8.02 -2.39 -0.02 2.00 16 31 H 0.04 1.12 7.08 -2.39 -0.02 1.10 16 32 H 0.05 1.69 7.75 -2.39 -0.02 1.68 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.74 5.45 -2.38 -0.01 1.72 16 41 H 0.09 3.29 7.84 -2.39 -0.02 3.27 16 42 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.08 3.20 8.06 -2.38 -0.02 3.18 16 44 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -69.46 344.11 2.08 -67.38 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.36 Total: 28.02 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 2.95 Total: -25.04 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.36 Total: -81.19 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.17 Total: -39.12 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -69.46 2.08 -67.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.610 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds