Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47038 * 239.99798 * 3 2 1 5 5 H 1.48491 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46973 * 120.00139 * 3 2 1 7 7 C 1.37878 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 173.34099 * 7 2 1 9 9 C 1.50703 * 119.99983 * 353.34740 * 7 2 1 10 10 C 1.53000 * 115.55177 * 85.25850 * 9 7 2 11 11 N 1.46906 * 109.46991 * 39.57370 * 10 9 7 12 12 C 1.46900 * 110.99612 * 174.69597 * 11 10 9 13 13 H 1.08997 * 109.47342 * 34.99646 * 12 11 10 14 14 C 1.50699 * 109.47095 * 274.99766 * 12 11 10 15 15 O 1.20826 * 120.00280 * 0.02562 * 14 12 11 16 16 O 1.34226 * 120.00268 * 180.02562 * 14 12 11 17 17 C 1.52998 * 109.46968 * 155.00063 * 12 11 10 18 18 C 1.53003 * 109.47204 * 299.99993 * 17 12 11 19 19 C 1.52998 * 109.47204 * 179.97438 * 18 17 12 20 20 C 1.52995 * 109.47271 * 60.00075 * 19 18 17 21 21 C 1.53007 * 109.47009 * 299.99554 * 20 19 18 22 22 C 1.52990 * 109.47412 * 179.97438 * 17 12 11 23 23 C 1.53005 * 117.51868 * 230.96277 * 9 7 2 24 24 C 1.53005 * 60.00021 * 107.47794 * 23 9 7 25 25 H 0.97001 * 119.99565 * 5.05707 * 1 2 3 26 26 H 1.08996 * 109.47008 * 279.57118 * 10 9 7 27 27 H 1.09007 * 109.46936 * 159.57095 * 10 9 7 28 28 H 1.00892 * 110.99722 * 298.64895 * 11 10 9 29 29 H 0.96701 * 117.00461 * 180.02562 * 16 14 12 30 30 H 1.09007 * 109.47356 * 59.99585 * 17 12 11 31 31 H 1.08997 * 109.46635 * 300.00129 * 18 17 12 32 32 H 1.09000 * 109.47169 * 59.99663 * 18 17 12 33 33 H 1.08995 * 109.46998 * 299.99338 * 19 18 17 34 34 H 1.09001 * 109.46744 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47284 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.47711 * 59.99699 * 20 19 18 37 37 H 1.08995 * 109.47003 * 300.00579 * 21 20 19 38 38 H 1.08993 * 109.47314 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47387 * 300.00083 * 22 17 12 40 40 H 1.09005 * 109.47460 * 59.99857 * 22 17 12 41 41 H 1.08996 * 117.49566 * 214.97328 * 23 9 7 42 42 H 1.09002 * 117.49658 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.49956 * 252.50770 * 24 23 9 44 44 H 1.08992 * 117.51182 * 107.48097 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1079 9 6 1.2586 -2.4947 0.1523 10 6 0.6955 -3.0873 -1.1410 11 7 1.6647 -2.8988 -2.2287 12 6 1.2135 -3.5659 -3.4573 13 1 0.1278 -3.5013 -3.5280 14 6 1.6296 -5.0139 -3.4245 15 8 2.2390 -5.4461 -2.4749 16 8 1.3231 -5.8237 -4.4502 17 6 1.8453 -2.8811 -4.6708 18 6 1.4230 -1.4109 -4.7041 19 6 2.0553 -0.7260 -5.9174 20 6 1.5860 -1.4205 -7.1972 21 6 2.0084 -2.8907 -7.1640 22 6 1.3760 -3.5761 -5.9504 23 6 1.7521 -3.4721 1.2211 24 6 0.4489 -2.6992 1.4344 25 1 -0.4849 0.8368 -0.0741 26 1 -0.2378 -2.5846 -1.3947 27 1 0.5084 -4.1521 -1.0014 28 1 1.8384 -1.9185 -2.3923 29 1 1.6108 -6.7445 -4.3837 30 1 2.9312 -2.9456 -4.6001 31 1 0.3372 -1.3464 -4.7749 32 1 1.7577 -0.9160 -3.7925 33 1 3.1410 -0.7905 -5.8461 34 1 1.7540 0.3213 -5.9413 35 1 2.0368 -0.9329 -8.0615 36 1 0.5003 -1.3560 -7.2685 37 1 3.0941 -2.9552 -7.0927 38 1 1.6737 -3.3857 -8.0756 39 1 1.6772 -4.6234 -5.9265 40 1 0.2901 -3.5120 -6.0214 41 1 1.6756 -4.5372 1.0027 42 1 2.6167 -3.1746 1.8144 43 1 0.4561 -1.8933 2.1681 44 1 -0.4850 -3.2557 1.3563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -86.152073 kcal Electronic energy + Delta-G solvation = -23555.192857 eV Core-core repulsion = 20279.215724 eV Total energy + Delta-G solvation = -3275.977133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24165 -38.36007 -36.85288 -35.75361 -34.41908 -31.90221 -30.96272 -30.48013 -26.90519 -25.36674 -24.12769 -22.26674 -22.08172 -20.93392 -20.20112 -19.70554 -18.94260 -17.71274 -16.40129 -16.13081 -15.59201 -14.78829 -14.58958 -14.44685 -14.18765 -14.06091 -13.79198 -13.50914 -13.26682 -12.73305 -12.55192 -12.10236 -12.02061 -11.89690 -11.41277 -11.31806 -11.16405 -10.99020 -10.93619 -10.88925 -10.76596 -10.44280 -10.31557 -10.15492 -10.06328 -9.92140 -9.78235 -9.34925 -8.75996 -8.40895 -8.03785 -7.46758 -6.00817 -4.05386 2.64979 3.29319 3.30879 3.35740 3.39515 4.40759 4.62955 4.78958 4.83673 5.01665 5.20154 5.27319 5.34746 5.41333 5.50673 5.54651 5.61015 5.62565 5.74253 5.77051 5.81898 5.98127 6.15431 6.20087 6.21982 6.24717 6.26341 6.45206 6.48624 6.54110 6.58467 6.62230 6.79012 6.83858 6.89528 6.98975 7.19657 7.43343 7.58722 7.90588 7.96241 8.31130 8.36451 8.57071 8.98273 9.58611 11.07003 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.006719 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.828728 B = 4166.080861 C = 5714.462319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.483 4.483 8 H 0.061 0.939 9 C 0.053 3.947 10 C 0.109 3.891 11 N -0.654 5.654 12 C 0.101 3.899 13 H 0.072 0.928 14 C 0.474 3.526 15 O -0.488 6.488 16 O -0.522 6.522 17 C -0.080 4.080 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.204 4.204 24 C -0.163 4.163 25 H 0.259 0.741 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.367 0.633 29 H 0.396 0.604 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -5.525 -14.016 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.522 4.522 8 H 0.079 0.921 9 C 0.052 3.948 10 C -0.019 4.019 11 N -0.292 5.292 12 C -0.011 4.011 13 H 0.089 0.911 14 C 0.314 3.686 15 O -0.372 6.372 16 O -0.334 6.334 17 C -0.099 4.099 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.241 4.241 24 C -0.201 4.201 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.194 0.806 29 H 0.254 0.746 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.849 -5.585 -13.486 14.621 hybrid contribution -0.179 0.865 -0.052 0.885 sum 0.670 -4.720 -13.537 14.352 Atomic orbital electron populations 1.69993 1.05777 1.26608 1.49485 1.25000 0.94764 0.98647 0.94980 0.86772 0.79692 0.83405 0.78837 1.20145 1.21496 1.20287 1.20398 0.93198 0.88506 1.50064 0.92052 1.18697 0.97165 0.93597 0.85345 1.21432 0.91981 0.96721 0.91799 1.59984 1.46743 1.20123 1.02396 1.21061 0.99005 0.87542 0.93525 0.91093 1.23885 0.76249 0.89373 0.79105 1.90707 1.36346 1.76110 1.34016 1.84656 1.76341 1.25662 1.46742 1.21189 1.01050 0.95102 0.92524 1.21655 1.00880 0.94237 0.98936 1.21491 1.00593 0.99050 0.94262 1.21562 1.00941 0.95732 0.97524 1.21528 1.00507 0.95482 0.97898 1.21829 1.00613 1.00519 0.93073 1.22968 0.97791 0.95829 1.07506 1.22528 0.92308 1.01332 1.03957 0.93116 0.95232 0.94347 0.80637 0.74593 0.90114 0.91745 0.90526 0.91928 0.91978 0.92511 0.92129 0.92218 0.92325 0.89577 0.92001 0.91760 0.90804 0.90255 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.05 12.93 55.43 0.72 -23.34 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 3 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.48 -12.84 7.47 -34.44 -0.26 -13.10 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.05 1.32 1.76 -155.65 -0.27 1.04 16 10 C 0.11 2.49 5.46 -3.82 -0.02 2.47 16 11 N -0.65 -13.41 5.60 -107.95 -0.60 -14.01 16 12 C 0.10 1.67 2.17 -68.87 -0.15 1.52 16 13 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 14 C 0.47 7.78 7.39 36.00 0.27 8.05 16 15 O -0.49 -9.91 16.72 -18.75 -0.31 -10.22 16 16 O -0.52 -6.23 10.34 -39.25 -0.41 -6.63 16 17 C -0.08 -1.10 1.90 -90.62 -0.17 -1.27 16 18 C -0.12 -1.66 4.97 -26.73 -0.13 -1.79 16 19 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 20 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 21 C -0.12 -1.18 5.93 -26.70 -0.16 -1.34 16 22 C -0.12 -1.41 4.69 -26.71 -0.13 -1.54 16 23 C -0.20 -4.80 9.88 -26.73 -0.26 -5.07 16 24 C -0.16 -3.97 9.46 -26.73 -0.25 -4.22 16 25 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.87 7.39 -51.93 -0.38 0.48 16 28 H 0.37 7.76 5.14 -39.30 -0.20 7.56 16 29 H 0.40 3.12 9.10 45.56 0.41 3.53 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.24 6.21 -51.93 -0.32 0.92 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.99 5.32 -51.93 -0.28 0.71 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.45 8.08 -51.93 -0.42 1.03 16 42 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -29.64 345.85 -9.01 -38.65 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.64 Total: 11.24 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.95 Total: -16.44 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.11 Total: -37.35 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.72 Total: -16.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.64 -9.01 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.500 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds