Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00531 * 2 1 4 4 H 1.48506 * 109.46956 * 276.88414 * 3 2 1 5 5 H 1.48497 * 109.47125 * 36.88057 * 3 2 1 6 6 H 1.48495 * 109.47542 * 156.88288 * 3 2 1 7 7 C 1.37881 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99747 * 349.61527 * 7 2 1 9 9 C 1.50696 * 119.99992 * 169.60873 * 7 2 1 10 10 C 1.52990 * 115.55343 * 323.74022 * 9 7 2 11 11 N 1.46899 * 109.47440 * 282.87708 * 10 9 7 12 12 C 1.46890 * 110.99965 * 291.62028 * 11 10 9 13 13 C 1.50704 * 109.47155 * 294.35632 * 12 11 10 14 14 O 1.20820 * 119.99856 * 356.05283 * 13 12 11 15 15 O 1.34234 * 119.99801 * 176.05248 * 13 12 11 16 16 C 1.46903 * 110.99433 * 55.57091 * 11 10 9 17 17 C 1.53005 * 109.47072 * 80.66927 * 16 11 10 18 18 C 1.52996 * 109.47046 * 179.97438 * 17 16 11 19 19 C 1.52997 * 109.47317 * 300.00002 * 18 17 16 20 20 C 1.53005 * 109.47064 * 60.00009 * 19 18 17 21 21 C 1.52991 * 109.47089 * 299.99818 * 20 19 18 22 22 C 1.53004 * 117.51337 * 109.44232 * 9 7 2 23 23 C 1.53004 * 60.00067 * 107.48109 * 22 9 7 24 24 H 0.97000 * 119.99571 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47409 * 162.87319 * 10 9 7 26 26 H 1.08999 * 109.47172 * 42.88051 * 10 9 7 27 27 H 1.09003 * 109.47774 * 54.35744 * 12 11 10 28 28 H 1.09000 * 109.47119 * 174.35918 * 12 11 10 29 29 H 0.96700 * 116.99192 * 180.02562 * 15 13 12 30 30 H 1.08998 * 109.47638 * 320.66732 * 16 11 10 31 31 H 1.09003 * 109.46995 * 59.99932 * 17 16 11 32 32 H 1.08999 * 109.46990 * 299.99705 * 17 16 11 33 33 H 1.09005 * 109.47105 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47247 * 60.00060 * 18 17 16 35 35 H 1.09003 * 109.47294 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.47435 * 300.00009 * 19 18 17 37 37 H 1.08998 * 109.47048 * 60.00218 * 20 19 18 38 38 H 1.08999 * 109.46990 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.47420 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.47503 * 300.00122 * 21 20 19 41 41 H 1.09003 * 117.49736 * 214.96823 * 22 9 7 42 42 H 1.08995 * 117.49983 * 359.97438 * 22 9 7 43 43 H 1.09002 * 117.49677 * 252.50991 * 23 22 9 44 44 H 1.08997 * 117.51849 * 107.47932 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3514 2.1302 -1.3900 5 1 1.5270 2.6063 0.8402 6 1 3.6118 1.4024 0.5497 7 6 2.0045 -1.1941 -0.0005 8 1 1.4777 -2.1218 0.1676 9 6 3.4929 -1.2048 -0.2359 10 6 4.0093 -0.1743 -1.2419 11 7 3.7221 -0.6355 -2.6067 12 6 4.5288 -1.8158 -2.9441 13 6 5.9859 -1.4335 -2.9849 14 8 6.3127 -0.2811 -2.8269 15 8 6.9207 -2.3733 -3.1968 16 6 2.2893 -0.9104 -2.7788 17 6 1.5444 0.4028 -3.0275 18 6 0.0523 0.1165 -3.2074 19 6 -0.1474 -0.8174 -4.4027 20 6 0.5975 -2.1305 -4.1540 21 6 2.0896 -1.8443 -3.9742 22 6 4.3941 -1.5448 0.9529 23 6 4.2074 -2.5566 -0.1796 24 1 -0.4849 0.8401 0.0004 25 1 5.0855 -0.0533 -1.1181 26 1 3.5143 0.7814 -1.0696 27 1 4.3767 -2.5878 -2.1897 28 1 4.2256 -2.1964 -3.9195 29 1 7.8420 -2.0799 -3.2141 30 1 1.8994 -1.3843 -1.8780 31 1 1.9343 0.8766 -3.9284 32 1 1.6870 1.0682 -2.1761 33 1 -0.4785 1.0520 -3.3841 34 1 -0.3379 -0.3576 -2.3068 35 1 -1.2104 -1.0218 -4.5306 36 1 0.2428 -0.3434 -5.3034 37 1 0.2074 -2.6046 -3.2534 38 1 0.4549 -2.7960 -5.0054 39 1 2.6203 -2.7797 -3.7966 40 1 2.4798 -1.3702 -4.8748 41 1 5.3549 -1.0343 1.0182 42 1 3.9105 -1.7604 1.9056 43 1 3.6008 -3.4381 0.0281 44 1 5.0450 -2.7118 -0.8594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = -25.637868 kcal Electronic energy + Delta-G solvation = -25055.078223 eV Core-core repulsion = 21781.725183 eV Total energy + Delta-G solvation = -3273.353040 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35724 -38.92215 -36.82315 -35.83315 -34.08948 -32.56008 -30.29645 -29.14597 -28.38353 -25.86663 -24.27208 -22.17621 -21.77139 -21.23526 -20.06519 -19.33588 -18.48246 -17.83781 -16.86661 -16.28379 -15.94360 -15.26212 -14.73649 -14.38492 -14.13150 -13.89039 -13.41913 -13.26538 -13.04792 -12.85750 -12.51000 -12.31591 -11.95406 -11.59794 -11.44424 -11.36239 -11.00831 -10.89822 -10.75125 -10.55023 -10.36987 -10.17355 -10.05168 -9.90485 -9.81817 -9.47679 -9.42606 -9.16920 -8.92807 -8.70028 -8.36126 -7.38040 -6.28107 -4.13378 2.54582 3.19874 3.23703 3.35641 3.38825 4.27166 4.53123 4.80247 5.22771 5.35506 5.39831 5.43575 5.57729 5.63658 5.69262 5.77588 5.94669 5.98338 6.08701 6.15001 6.21696 6.23758 6.25122 6.30498 6.33178 6.36562 6.41817 6.60689 6.66158 6.67534 6.76369 6.79944 6.81377 6.89122 7.01941 7.06797 7.16861 7.31926 7.48150 7.58916 7.78623 7.92369 8.23360 8.37386 8.73239 9.34687 10.80784 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.010297 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.707004 B = 2718.485677 C = 3705.869307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.089 3.911 3 Si 0.875 3.125 4 H -0.255 1.255 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.484 4.484 8 H 0.081 0.919 9 C -0.024 4.024 10 C 0.076 3.924 11 N -0.512 5.512 12 C 0.031 3.969 13 C 0.474 3.526 14 O -0.501 6.501 15 O -0.525 6.525 16 C 0.045 3.955 17 C -0.112 4.112 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.204 4.204 23 C -0.203 4.203 24 H 0.268 0.732 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.403 0.597 30 H 0.144 0.856 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -3.998 -7.200 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.116 4.116 3 Si 0.709 3.291 4 H -0.183 1.183 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.520 4.520 8 H 0.099 0.901 9 C -0.026 4.026 10 C -0.051 4.051 11 N -0.236 5.236 12 C -0.097 4.097 13 C 0.316 3.684 14 O -0.387 6.387 15 O -0.337 6.337 16 C -0.060 4.060 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.151 4.151 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.243 4.243 23 C -0.240 4.240 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.260 0.740 30 H 0.160 0.840 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.968 -3.310 -7.493 9.580 hybrid contribution 1.067 0.578 0.505 1.314 sum 6.034 -2.732 -6.989 9.629 Atomic orbital electron populations 1.69843 1.06007 1.27413 1.47405 1.24876 0.94585 0.98639 0.93471 0.87453 0.80013 0.83906 0.77754 1.18344 1.23261 1.19316 1.20134 0.87719 0.95010 1.49124 0.90125 1.20173 0.94787 0.92728 0.94902 1.22196 0.99629 0.97173 0.86084 1.62170 1.06776 1.29629 1.25004 1.22247 0.85666 0.96510 1.05297 1.23844 0.89421 0.83200 0.71973 1.90671 1.82567 1.20980 1.44487 1.84553 1.20619 1.43735 1.84764 1.22755 0.85362 0.96445 1.01488 1.21770 0.94220 0.97663 1.01256 1.21638 0.96477 0.98401 0.99742 1.21496 0.98899 0.96262 0.98440 1.21439 0.95355 0.97109 1.01095 1.21839 0.96269 0.98868 0.98787 1.23069 1.01185 1.05126 0.94924 1.23004 1.03017 0.94950 1.03010 0.92201 0.91373 0.91669 0.87871 0.86749 0.73953 0.83990 0.94062 0.90761 0.93792 0.88223 0.93053 0.93301 0.91398 0.93171 0.92542 0.92839 0.91579 0.89613 0.89672 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.94 12.34 55.43 0.68 -22.25 16 2 C 0.09 2.27 3.71 -17.82 -0.07 2.21 16 3 Si 0.87 21.13 22.12 -169.99 -3.76 17.37 16 4 H -0.25 -6.02 5.35 56.52 0.30 -5.72 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.50 6.43 56.52 0.36 -6.14 16 7 C -0.48 -12.08 6.67 -34.44 -0.23 -12.31 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 9 C -0.02 -0.52 0.93 -155.66 -0.15 -0.67 16 10 C 0.08 1.69 3.98 -3.83 -0.02 1.68 16 11 N -0.51 -10.31 4.28 -228.09 -0.98 -11.29 16 12 C 0.03 0.53 4.21 -4.98 -0.02 0.51 16 13 C 0.47 7.86 7.43 36.01 0.27 8.13 16 14 O -0.50 -9.89 15.30 -18.74 -0.29 -10.18 16 15 O -0.53 -6.67 13.42 -39.27 -0.53 -7.20 16 16 C 0.04 0.90 1.51 -67.71 -0.10 0.80 16 17 C -0.11 -2.32 4.60 -26.73 -0.12 -2.45 16 18 C -0.12 -2.41 5.92 -26.73 -0.16 -2.56 16 19 C -0.11 -1.84 5.92 -26.73 -0.16 -2.00 16 20 C -0.11 -1.77 5.92 -26.73 -0.16 -1.93 16 21 C -0.12 -1.99 4.01 -26.73 -0.11 -2.10 16 22 C -0.20 -4.25 9.88 -26.73 -0.26 -4.51 16 23 C -0.20 -3.93 8.10 -26.73 -0.22 -4.14 16 24 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.07 1.53 5.73 -51.93 -0.30 1.23 16 26 H 0.07 1.57 1.69 -51.93 -0.09 1.48 16 27 H 0.10 1.75 3.91 -51.93 -0.20 1.55 16 28 H 0.11 1.70 5.63 -51.93 -0.29 1.41 16 29 H 0.40 3.33 9.10 45.56 0.41 3.75 16 30 H 0.14 3.24 3.63 -51.93 -0.19 3.05 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.71 2.01 -51.93 -0.10 1.61 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 2.19 6.43 -51.93 -0.33 1.86 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.86 6.31 -51.93 -0.33 0.53 16 40 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 42 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 43 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 44 H 0.08 1.34 5.52 -51.93 -0.29 1.05 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -27.75 306.80 -7.37 -35.12 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.62 Total: 13.16 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.50 Total: -19.36 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: -0.29 Total: -33.54 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.81 Total: -17.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -3.76 Total: 17.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.75 -7.37 -35.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.482 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds