Wall clock time and date at job start Tue Mar 31 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48496 * 109.47389 * 95.63165 * 3 2 1 5 5 H 1.48500 * 109.47157 * 215.63358 * 3 2 1 6 6 H 1.48506 * 109.47273 * 335.63244 * 3 2 1 7 7 C 1.37873 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 355.60675 * 7 2 1 9 9 C 1.50699 * 120.00220 * 175.60637 * 7 2 1 10 10 C 1.53000 * 115.54826 * 273.40121 * 9 7 2 11 11 N 1.46896 * 109.47338 * 303.13592 * 10 9 7 12 12 C 1.46899 * 111.00508 * 172.19377 * 11 10 9 13 13 C 1.50695 * 108.85488 * 61.08562 * 12 11 10 14 14 O 1.20825 * 120.00036 * 137.68045 * 13 12 11 15 15 O 1.34230 * 120.00006 * 317.67769 * 13 12 11 16 16 C 1.50479 * 108.87267 * 302.52898 * 12 11 10 17 17 C 1.54145 * 108.57897 * 333.50969 * 16 12 11 18 18 C 1.45544 * 112.32515 * 279.90998 * 17 16 12 19 19 C 1.54234 * 112.40932 * 61.93188 * 18 17 16 20 20 C 1.50473 * 108.52032 * 280.01003 * 19 18 17 21 21 C 1.54062 * 112.49653 * 94.15863 * 20 19 18 22 22 C 1.52993 * 117.50032 * 127.72941 * 9 7 2 23 23 C 1.52995 * 117.49979 * 59.06598 * 9 7 2 24 24 H 0.97008 * 120.00104 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47360 * 63.13843 * 10 9 7 26 26 H 1.08999 * 109.47427 * 183.13593 * 10 9 7 27 27 H 1.00910 * 111.00005 * 296.14758 * 11 10 9 28 28 H 0.96703 * 116.99946 * 179.97438 * 15 13 12 29 29 H 1.08995 * 109.62818 * 93.08120 * 16 12 11 30 30 H 1.09009 * 109.62628 * 213.66012 * 16 12 11 31 31 H 1.08994 * 108.93669 * 159.17893 * 17 16 12 32 32 H 1.09004 * 108.85861 * 40.58314 * 17 16 12 33 33 H 1.09005 * 108.88805 * 301.18187 * 18 17 16 34 34 H 1.08995 * 108.81674 * 182.64341 * 18 17 16 35 35 H 1.09011 * 109.62947 * 160.29922 * 19 18 17 36 36 H 1.09004 * 109.62845 * 39.72538 * 19 18 17 37 37 H 1.09000 * 108.87716 * 333.37593 * 20 19 18 38 38 H 1.09002 * 108.87639 * 214.92746 * 20 19 18 39 39 H 1.09005 * 108.81075 * 197.42663 * 21 20 19 40 40 H 1.08994 * 108.73024 * 79.08162 * 21 20 19 41 41 H 1.08998 * 117.49990 * 359.97438 * 22 9 7 42 42 H 1.09002 * 117.50181 * 145.02486 * 22 9 7 43 43 H 1.08996 * 117.50208 * 214.98191 * 23 9 7 44 44 H 1.09003 * 117.49779 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6156 1.9778 1.3933 5 1 3.4821 1.4775 -0.8157 6 1 1.3921 2.6842 -0.5777 7 6 2.0045 -1.1940 -0.0005 8 1 1.4669 -2.1280 0.0707 9 6 3.5082 -1.1959 -0.1005 10 6 4.0751 -1.1670 -1.5213 11 7 3.5503 -2.3094 -2.2812 12 6 3.9231 -2.2147 -3.6990 13 6 5.4259 -2.2285 -3.8093 14 8 5.9623 -2.8815 -4.6728 15 8 6.1687 -1.5152 -2.9483 16 6 3.4063 -0.9143 -4.2524 17 6 2.1752 -0.4852 -3.4299 18 6 0.9670 -1.1883 -3.8354 19 6 1.0746 -2.7123 -3.6240 20 6 1.8568 -3.2995 -4.7675 21 6 3.3571 -3.4375 -4.4460 22 6 4.2854 -1.9860 0.9542 23 6 4.2894 -0.4556 0.9869 24 1 -0.4851 0.8401 0.0004 25 1 3.7809 -0.2388 -2.0112 26 1 5.1626 -1.2270 -1.4800 27 1 3.8620 -3.1826 -1.8829 28 1 7.1286 -1.5557 -3.0583 29 1 4.1796 -0.1502 -4.1748 30 1 3.1227 -1.0476 -5.2965 31 1 2.0200 0.5860 -3.5580 32 1 2.3662 -0.6904 -2.3766 33 1 0.7813 -0.9907 -4.8912 34 1 0.1275 -0.8094 -3.2527 35 1 0.0765 -3.1500 -3.6000 36 1 1.5895 -2.9163 -2.6851 37 1 1.7407 -2.6574 -5.6406 38 1 1.4541 -4.2851 -5.0009 39 1 3.9063 -3.5644 -5.3790 40 1 3.5028 -4.3244 -3.8295 41 1 3.7091 -2.5041 1.7208 42 1 5.2008 -2.4849 0.6361 43 1 5.2074 0.0516 0.6902 44 1 3.7158 0.0325 1.7748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:50 Heat of formation + Delta-G solvation = -40.504298 kcal Electronic energy + Delta-G solvation = -25033.568844 eV Core-core repulsion = 21759.571147 eV Total energy + Delta-G solvation = -3273.997697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99333 -38.60375 -36.93773 -36.01242 -33.84363 -32.18247 -31.89155 -30.07226 -26.35579 -25.19044 -24.66751 -23.63233 -21.70328 -21.61579 -19.63043 -19.07260 -18.55084 -17.92793 -17.00209 -16.42621 -15.67123 -15.25805 -14.79253 -14.30782 -14.06245 -13.72784 -13.39164 -13.21795 -12.97353 -12.83151 -12.54444 -12.42313 -12.09782 -11.79135 -11.57069 -11.40147 -11.08885 -10.97286 -10.77513 -10.44111 -10.35561 -10.31317 -10.21892 -9.95405 -9.72565 -9.56520 -9.47169 -9.30782 -8.95895 -8.41582 -8.39147 -7.74863 -6.01268 -3.99135 2.30649 3.14075 3.32059 3.42441 3.44922 4.45185 4.47931 4.80510 5.02109 5.04997 5.21438 5.32077 5.48139 5.57649 5.72092 5.76859 5.78971 5.87848 5.94587 6.05206 6.09311 6.19217 6.22102 6.27722 6.44080 6.45326 6.49288 6.56017 6.57545 6.59498 6.67132 6.74672 6.91969 7.04590 7.06317 7.14727 7.19654 7.40918 7.52051 7.68020 7.79839 7.89759 8.03086 8.61811 9.04720 9.62042 11.10432 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.009049 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.623185 B = 3093.502585 C = 3901.801055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.082 3.918 3 Si 0.867 3.133 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.298 1.298 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.008 3.992 10 C 0.062 3.938 11 N -0.627 5.627 12 C 0.139 3.861 13 C 0.442 3.558 14 O -0.528 6.528 15 O -0.499 6.499 16 C -0.105 4.105 17 C -0.150 4.150 18 C -0.093 4.093 19 C -0.127 4.127 20 C -0.105 4.105 21 C -0.096 4.096 22 C -0.184 4.184 23 C -0.205 4.205 24 H 0.261 0.739 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.337 0.663 28 H 0.387 0.613 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.152 0.848 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.793 -3.162 -7.036 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.120 4.120 3 Si 0.696 3.304 4 H -0.208 1.208 5 H -0.186 1.186 6 H -0.225 1.225 7 C -0.498 4.498 8 H 0.098 0.902 9 C 0.007 3.993 10 C -0.065 4.065 11 N -0.257 5.257 12 C 0.045 3.955 13 C 0.283 3.717 14 O -0.415 6.415 15 O -0.310 6.310 16 C -0.143 4.143 17 C -0.186 4.186 18 C -0.130 4.130 19 C -0.164 4.164 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.221 4.221 23 C -0.243 4.243 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.156 0.844 28 H 0.245 0.755 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.169 0.831 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.720 -2.923 -7.325 10.361 hybrid contribution 2.172 0.852 -0.100 2.336 sum 8.892 -2.070 -7.425 11.768 Atomic orbital electron populations 1.69881 1.06054 1.26616 1.50672 1.24849 0.94401 0.98214 0.94544 0.87112 0.80364 0.84401 0.78535 1.20799 1.18613 1.22497 1.20095 0.86156 0.94297 1.49300 0.90185 1.19489 0.94878 0.98789 0.86167 1.22515 0.95735 0.93813 0.94414 1.60745 1.60650 1.05987 0.98364 1.21018 0.82279 0.99031 0.93185 1.26130 0.93232 0.74851 0.77482 1.90632 1.74711 1.41290 1.34903 1.85108 1.24032 1.66686 1.55184 1.21429 0.99464 0.93362 1.00064 1.21069 0.92873 0.97664 1.07031 1.20163 0.98549 0.95878 0.98416 1.21518 0.98955 0.94911 1.01040 1.21263 0.93315 1.00382 0.99301 1.21895 0.96960 0.94665 0.99855 1.22825 1.01282 0.93043 1.04992 1.22979 1.01830 0.94605 1.04900 0.92866 0.89781 0.93400 0.84365 0.75452 0.92413 0.91371 0.94362 0.83061 0.95274 0.91911 0.93587 0.86750 0.92895 0.92725 0.90882 0.91667 0.89692 0.91477 0.91215 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 13.96 55.43 0.77 -24.60 16 2 C 0.08 2.15 5.02 -17.82 -0.09 2.06 16 3 Si 0.87 20.74 24.71 -169.99 -4.20 16.54 16 4 H -0.28 -6.75 6.99 56.52 0.40 -6.35 16 5 H -0.26 -5.92 6.00 56.52 0.34 -5.58 16 6 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.46 -11.52 8.09 -34.44 -0.28 -11.80 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.01 0.17 1.10 -155.67 -0.17 0.00 16 10 C 0.06 1.16 3.56 -3.83 -0.01 1.15 16 11 N -0.63 -10.52 2.26 -101.87 -0.23 -10.75 16 12 C 0.14 2.14 0.52 -133.46 -0.07 2.07 16 13 C 0.44 6.75 6.81 36.00 0.25 7.00 16 14 O -0.53 -8.99 16.32 -18.75 -0.31 -9.30 16 15 O -0.50 -6.69 9.68 -39.26 -0.38 -7.07 16 16 C -0.11 -1.68 4.24 -27.39 -0.12 -1.80 16 17 C -0.15 -2.79 4.29 -29.65 -0.13 -2.92 16 18 C -0.09 -1.67 5.26 -29.60 -0.16 -1.83 16 19 C -0.13 -2.13 5.61 -27.35 -0.15 -2.28 16 20 C -0.11 -1.48 5.31 -27.44 -0.15 -1.62 16 21 C -0.10 -1.36 4.70 -25.62 -0.12 -1.48 16 22 C -0.18 -3.47 9.94 -26.70 -0.27 -3.74 16 23 C -0.21 -4.14 7.54 -26.70 -0.20 -4.35 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.08 1.71 3.70 -51.93 -0.19 1.51 16 26 H 0.05 0.84 5.01 -51.57 -0.26 0.58 16 27 H 0.34 5.38 8.61 -39.29 -0.34 5.04 16 28 H 0.39 3.51 9.10 45.95 0.42 3.93 16 29 H 0.06 0.91 7.54 -51.93 -0.39 0.52 16 30 H 0.07 1.00 6.97 -51.92 -0.36 0.64 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.15 3.14 2.13 -51.93 -0.11 3.03 16 33 H 0.03 0.47 7.47 -51.93 -0.39 0.08 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.11 2.14 5.57 -51.93 -0.29 1.85 16 37 H 0.05 0.72 6.63 -51.93 -0.34 0.38 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.04 7.11 -51.93 -0.37 0.67 16 40 H 0.06 0.89 7.93 -51.93 -0.41 0.47 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.09 1.88 6.88 -51.93 -0.36 1.52 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -28.14 317.01 -7.21 -35.35 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.98 Total: 14.58 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -1.66 Total: -19.54 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.54 Total: -35.35 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.69 Total: -16.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.20 Total: 16.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.14 -7.21 -35.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.156 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds