Wall clock time and date at job start Tue Mar 31 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47008 * 120.00503 * 3 2 1 6 6 H 1.48510 * 109.47311 * 240.00081 * 3 2 1 7 7 C 1.37875 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00074 * 185.69115 * 7 2 1 9 9 C 1.50700 * 119.99892 * 5.68564 * 7 2 1 10 10 C 1.53008 * 115.54837 * 275.20214 * 9 7 2 11 11 N 1.46897 * 109.47066 * 300.49848 * 10 9 7 12 12 C 1.46904 * 110.99756 * 184.87320 * 11 10 9 13 13 C 1.53002 * 109.46646 * 278.97241 * 12 11 10 14 14 C 1.53002 * 109.47284 * 299.99960 * 13 12 11 15 15 C 1.52996 * 109.47096 * 300.00271 * 14 13 12 16 16 C 1.53002 * 109.47096 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46989 * 65.00120 * 16 15 14 18 18 O 1.20823 * 120.00542 * 359.97438 * 17 16 15 19 19 O 1.34233 * 119.99835 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47275 * 59.99724 * 15 14 13 21 21 C 1.52994 * 109.47442 * 158.97575 * 12 11 10 22 22 C 1.52995 * 117.50250 * 129.53761 * 9 7 2 23 23 C 1.52992 * 117.50260 * 60.87183 * 9 7 2 24 24 H 0.97006 * 120.00140 * 175.12089 * 1 2 3 25 25 H 1.08996 * 109.46742 * 60.49454 * 10 9 7 26 26 H 1.08995 * 109.46611 * 180.49523 * 10 9 7 27 27 H 1.00900 * 111.00250 * 308.82020 * 11 10 9 28 28 H 1.08998 * 109.47598 * 38.96828 * 12 11 10 29 29 H 1.09005 * 109.47158 * 60.00331 * 13 12 11 30 30 H 1.09007 * 109.46811 * 179.97438 * 13 12 11 31 31 H 1.09004 * 109.46993 * 180.02562 * 14 13 12 32 32 H 1.09002 * 109.46793 * 60.00233 * 14 13 12 33 33 H 1.09007 * 109.47009 * 300.00080 * 15 14 13 34 34 H 1.09006 * 109.46918 * 184.99935 * 16 15 14 35 35 H 1.08994 * 109.47031 * 304.99869 * 16 15 14 36 36 H 0.96701 * 117.00222 * 179.97438 * 19 17 16 37 37 H 1.09002 * 109.47334 * 180.02562 * 20 15 14 38 38 H 1.09002 * 109.47015 * 59.99791 * 20 15 14 39 39 H 1.08996 * 109.47779 * 179.97438 * 21 12 11 40 40 H 1.09004 * 109.46879 * 299.99880 * 21 12 11 41 41 H 1.09003 * 117.49669 * 359.97438 * 22 9 7 42 42 H 1.09000 * 117.50484 * 145.01937 * 22 9 7 43 43 H 1.08993 * 117.50489 * 214.98195 * 23 9 7 44 44 H 1.09004 * 117.49796 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0922 9 6 1.2566 -2.4959 -0.1304 10 6 0.7030 -3.0719 1.1745 11 7 1.8084 -3.3108 2.1121 12 6 1.3291 -3.9713 3.3336 13 6 0.7216 -2.9275 4.2729 14 6 1.7849 -1.8896 4.6380 15 6 2.9564 -2.5834 5.3358 16 6 4.0199 -1.5456 5.7003 17 6 3.4589 -0.5882 6.7199 18 8 2.3247 -0.7218 7.1143 19 8 4.2193 0.4131 7.1900 20 6 3.5639 -3.6272 4.3965 21 6 2.5006 -4.6651 4.0315 22 6 1.7421 -3.4869 -1.1901 23 6 0.4370 -2.7158 -1.4034 24 1 -0.4851 -0.8370 -0.0715 25 1 0.0000 -2.3646 1.6144 26 1 0.1916 -4.0121 0.9685 27 1 2.5432 -3.8470 1.6757 28 1 0.5716 -4.7107 3.0736 29 1 -0.1131 -2.4332 3.7757 30 1 0.3656 -3.4177 5.1791 31 1 1.3521 -1.1462 5.3075 32 1 2.1404 -1.3996 3.7316 33 1 2.6007 -3.0735 6.2422 34 1 4.8920 -2.0499 6.1166 35 1 4.3113 -0.9946 4.8062 36 1 3.8157 1.0018 7.8424 37 1 4.3982 -4.1218 4.8938 38 1 3.9194 -3.1372 3.4901 39 1 2.1451 -5.1548 4.9381 40 1 2.9334 -5.4087 3.3623 41 1 2.6022 -3.1971 -1.7937 42 1 1.6667 -4.5492 -0.9579 43 1 -0.4963 -3.2712 -1.3115 44 1 0.4384 -1.9187 -2.1469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:24 Heat of formation + Delta-G solvation = -94.491969 kcal Electronic energy + Delta-G solvation = -23318.871299 eV Core-core repulsion = 20042.532521 eV Total energy + Delta-G solvation = -3276.338778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38392 -38.73365 -36.95864 -36.08254 -34.04547 -31.74001 -30.84362 -30.37374 -27.14979 -25.01257 -24.08616 -22.49321 -22.08554 -21.23184 -20.22991 -19.24611 -18.73160 -17.97077 -16.60047 -16.37817 -15.87498 -15.25593 -15.01498 -14.28686 -14.03587 -13.70587 -13.65502 -13.24302 -13.17562 -12.58505 -12.43051 -12.21513 -11.93618 -11.84727 -11.60938 -11.43411 -11.32916 -11.16476 -10.74804 -10.68188 -10.66748 -10.55736 -10.39577 -10.17393 -10.04634 -9.72143 -9.56602 -9.41605 -8.43457 -8.33667 -8.19479 -7.48458 -6.19922 -3.89926 2.27603 3.10064 3.49658 3.51034 3.69446 4.60100 4.68942 4.86763 4.92533 5.05834 5.22372 5.26199 5.31821 5.47800 5.53786 5.63524 5.74565 5.76105 5.83924 5.93064 5.94487 6.00709 6.09952 6.14964 6.20095 6.31009 6.36822 6.41957 6.49536 6.53532 6.58999 6.60612 6.73097 6.77498 6.82478 6.92792 7.11202 7.28964 7.39602 7.94018 7.96299 8.19269 8.43667 8.56849 9.02472 9.81603 11.19867 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.006156 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.738390 B = 4547.210311 C = 5851.916380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.104 3.896 11 N -0.653 5.653 12 C 0.084 3.916 13 C -0.099 4.099 14 C -0.112 4.112 15 C -0.069 4.069 16 C -0.110 4.110 17 C 0.477 3.523 18 O -0.510 6.510 19 O -0.523 6.523 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.201 4.201 23 C -0.182 4.182 24 H 0.272 0.728 25 H 0.067 0.933 26 H -0.007 1.007 27 H 0.331 0.669 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.406 0.594 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -6.018 11.359 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.892 3.108 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.582 4.582 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.025 4.025 11 N -0.283 5.283 12 C -0.026 4.026 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.088 4.088 16 C -0.148 4.148 17 C 0.320 3.680 18 O -0.398 6.398 19 O -0.334 6.334 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.239 4.239 23 C -0.221 4.221 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.011 0.989 27 H 0.149 0.851 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.908 -4.033 11.520 14.025 hybrid contribution -0.353 -2.242 -0.030 2.269 sum 6.555 -6.275 11.490 14.641 Atomic orbital electron populations 1.70725 1.06779 1.31317 1.46006 1.25608 0.96555 1.01921 0.93808 0.83634 0.74947 0.75860 0.76347 1.21121 1.21510 1.21784 1.21051 0.93705 0.89241 1.54210 0.93124 1.19176 0.97540 0.95197 0.85264 1.21615 0.92096 0.95633 0.93172 1.60291 1.11681 1.50778 1.05585 1.21515 0.95043 0.93953 0.92125 1.21398 0.98247 0.96731 0.97339 1.21580 0.94684 0.97789 1.00924 1.20969 0.94684 0.94445 0.98670 1.21524 1.00486 0.95558 0.97209 1.23714 0.83851 0.79725 0.80699 1.90698 1.19571 1.72183 1.57364 1.84562 1.49036 1.41356 1.58491 1.21465 0.96913 0.95999 1.00029 1.21614 0.96297 0.97318 0.99869 1.22881 0.98028 0.95292 1.07678 1.22754 0.92727 1.02284 1.04305 0.91642 0.91424 0.98933 0.85105 0.95500 0.92153 0.93178 0.91834 0.89506 0.91359 0.88186 0.87113 0.73591 0.92939 0.89989 0.92141 0.92412 0.90309 0.92067 0.91894 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.88 13.57 55.43 0.75 -26.13 16 2 C 0.03 0.71 5.39 -17.82 -0.10 0.62 16 3 Si 1.06 25.17 29.91 -169.99 -5.08 20.09 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.54 -14.61 8.63 -34.44 -0.30 -14.91 16 8 H 0.05 1.39 7.82 -52.48 -0.41 0.98 16 9 C 0.03 0.69 1.06 -155.66 -0.17 0.53 16 10 C 0.10 2.25 5.30 -3.82 -0.02 2.23 16 11 N -0.65 -12.16 4.60 -106.73 -0.49 -12.65 16 12 C 0.08 1.33 2.81 -67.71 -0.19 1.14 16 13 C -0.10 -1.65 5.49 -26.73 -0.15 -1.79 16 14 C -0.11 -1.88 4.79 -26.73 -0.13 -2.00 16 15 C -0.07 -0.91 1.84 -90.62 -0.17 -1.08 16 16 C -0.11 -1.28 5.28 -27.88 -0.15 -1.43 16 17 C 0.48 6.15 8.05 36.00 0.29 6.44 16 18 O -0.51 -8.10 14.73 -18.75 -0.28 -8.37 16 19 O -0.52 -5.45 13.42 -39.26 -0.53 -5.97 16 20 C -0.11 -1.32 5.05 -26.73 -0.13 -1.45 16 21 C -0.11 -1.45 5.34 -26.73 -0.14 -1.59 16 22 C -0.20 -4.30 9.95 -26.70 -0.27 -4.57 16 23 C -0.18 -4.21 8.65 -26.70 -0.23 -4.44 16 24 H 0.27 7.97 6.20 -40.82 -0.25 7.72 16 25 H 0.07 1.66 7.07 -51.93 -0.37 1.29 16 26 H -0.01 -0.15 7.92 -51.93 -0.41 -0.56 16 27 H 0.33 5.96 8.33 -39.29 -0.33 5.63 16 28 H 0.03 0.44 7.79 -51.93 -0.40 0.03 16 29 H 0.06 1.14 7.31 -51.93 -0.38 0.76 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.14 5.96 -51.93 -0.31 0.83 16 32 H 0.09 1.71 7.60 -51.93 -0.39 1.31 16 33 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.41 2.57 9.10 45.56 0.41 2.98 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.15 7.59 -51.93 -0.39 0.75 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -30.90 347.22 -8.91 -39.80 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.67 Total: 10.31 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.84 Total: -22.31 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.26 Total: -38.78 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.80 Total: -14.35 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.90 -8.91 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.689 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds