Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.53004 * 109.46847 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47130 * 180.02562 * 10 9 7 12 12 C 1.46862 * 111.00039 * 66.04849 * 11 10 9 13 13 C 1.53019 * 109.59339 * 185.70736 * 12 11 10 14 14 C 1.53146 * 109.32683 * 300.94717 * 13 12 11 15 15 H 1.09003 * 109.53691 * 297.70816 * 14 13 12 16 16 C 1.50701 * 109.53407 * 177.55568 * 14 13 12 17 17 O 1.20830 * 119.99887 * 240.00168 * 16 14 13 18 18 O 1.34229 * 120.00040 * 60.00160 * 16 14 13 19 19 C 1.53082 * 109.08939 * 57.59451 * 14 13 12 20 20 H 1.09000 * 109.49608 * 62.13443 * 19 14 13 21 21 C 1.52971 * 109.59839 * 182.35848 * 19 14 13 22 22 C 1.53020 * 109.39745 * 179.97438 * 21 19 14 23 23 C 1.52984 * 109.52889 * 300.06319 * 22 21 19 24 24 C 1.53018 * 109.53875 * 59.84457 * 23 22 21 25 25 C 1.46805 * 111.00069 * 190.17407 * 11 10 9 26 26 H 1.09000 * 109.44090 * 294.07605 * 25 11 10 27 27 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 29 29 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 30 30 H 1.08998 * 109.47524 * 300.00187 * 10 9 7 31 31 H 1.08997 * 109.47093 * 60.00287 * 10 9 7 32 32 H 1.09003 * 109.45094 * 305.73955 * 12 11 10 33 33 H 1.09000 * 109.45378 * 65.68723 * 12 11 10 34 34 H 1.08998 * 109.50022 * 60.90152 * 13 12 11 35 35 H 1.09007 * 109.49549 * 180.99212 * 13 12 11 36 36 H 0.96703 * 116.99856 * 180.02562 * 18 16 14 37 37 H 1.09002 * 109.48466 * 299.91477 * 21 19 14 38 38 H 1.09002 * 109.48099 * 59.95776 * 21 19 14 39 39 H 1.08995 * 109.46255 * 180.02562 * 22 21 19 40 40 H 1.09004 * 109.44981 * 60.06919 * 22 21 19 41 41 H 1.09007 * 109.45640 * 299.82570 * 23 22 21 42 42 H 1.09000 * 109.45071 * 179.86691 * 23 22 21 43 43 H 1.09005 * 109.48185 * 180.09177 * 24 23 22 44 44 H 1.09000 * 109.48033 * 60.05640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0213 -2.6367 0.0183 11 7 5.4903 -2.6368 0.0251 12 6 6.0109 -2.0769 1.2790 13 6 7.5344 -1.9604 1.1955 14 6 8.1356 -3.3463 0.9438 15 1 7.9002 -4.0033 1.7811 16 6 9.6312 -3.2283 0.8010 17 8 10.1696 -3.5769 -0.2230 18 8 10.3652 -2.7361 1.8113 19 6 7.5408 -3.9238 -0.3431 20 1 7.8070 -3.2853 -1.1854 21 6 8.0894 -5.3329 -0.5745 22 6 7.4916 -5.9060 -1.8613 23 6 5.9681 -5.9645 -1.7356 24 6 5.4195 -4.5557 -1.4997 25 6 6.0175 -3.9865 -0.2109 26 1 5.7521 -4.6313 0.6270 27 1 -0.4849 0.8401 -0.0004 28 1 3.8785 -0.6826 -0.8776 29 1 3.8711 -0.6783 0.9024 30 1 3.6543 -3.1481 0.9082 31 1 3.6617 -3.1531 -0.8717 32 1 5.5799 -1.0891 1.4420 33 1 5.7421 -2.7314 2.1081 34 1 7.8040 -1.2929 0.3771 35 1 7.9207 -1.5612 2.1334 36 1 11.3205 -2.6793 1.6729 37 1 9.1747 -5.2901 -0.6661 38 1 7.8203 -5.9706 0.2675 39 1 7.8814 -6.9103 -2.0270 40 1 7.7623 -5.2681 -2.7027 41 1 5.6974 -6.6049 -0.8960 42 1 5.5434 -6.3707 -2.6536 43 1 4.3341 -4.5987 -1.4086 44 1 5.6889 -3.9153 -2.3396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = -112.098099 kcal Electronic energy + Delta-G solvation = -23433.174273 eV Core-core repulsion = 20156.072036 eV Total energy + Delta-G solvation = -3277.102237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.02885 -39.36353 -36.48403 -36.01387 -34.48774 -32.76064 -30.47645 -30.13093 -29.14142 -26.24922 -23.99692 -22.86519 -22.63280 -21.38553 -19.88231 -19.79540 -19.57928 -18.12866 -16.90000 -16.67473 -15.86788 -15.58398 -14.85815 -14.62319 -14.39277 -14.14480 -14.03633 -13.62920 -13.46687 -12.95691 -12.70424 -12.67115 -12.45138 -12.08828 -11.76441 -11.66525 -11.49940 -11.34861 -11.17081 -11.06996 -10.89914 -10.83541 -10.60014 -10.48304 -10.14992 -10.02993 -9.88314 -9.56794 -9.51772 -9.15571 -8.51978 -7.84633 -6.03906 -4.01833 2.05763 2.88490 3.33011 3.40013 3.44062 4.16878 4.41410 4.46576 4.64835 4.76806 4.93074 5.02573 5.15024 5.25064 5.29402 5.30699 5.34595 5.46684 5.53137 5.57181 5.63034 5.65040 5.74718 5.87741 6.01276 6.03655 6.12452 6.13879 6.15636 6.20166 6.27752 6.30194 6.31859 6.37969 6.46374 6.57585 6.81215 7.17369 7.32700 7.60577 7.64860 7.74812 7.85976 8.53690 9.00429 9.58838 11.09524 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.004866 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.098068 B = 5753.238093 C = 6856.631276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.007 4.007 10 C 0.066 3.934 11 N -0.539 5.539 12 C 0.055 3.945 13 C -0.107 4.107 14 C -0.077 4.077 15 H 0.104 0.896 16 C 0.485 3.515 17 O -0.511 6.511 18 O -0.517 6.517 19 C -0.060 4.060 20 H 0.088 0.912 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.116 4.116 25 C 0.094 3.906 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.406 0.594 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.530 -9.488 1.891 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.045 4.045 10 C -0.060 4.060 11 N -0.263 5.263 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.096 4.096 15 H 0.122 0.878 16 C 0.327 3.673 17 O -0.399 6.399 18 O -0.329 6.329 19 C -0.079 4.079 20 H 0.106 0.894 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.015 4.015 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.238 -9.187 1.293 21.359 hybrid contribution 0.694 0.451 0.638 1.045 sum 19.932 -8.736 1.931 21.848 Atomic orbital electron populations 1.69918 1.06324 1.26878 1.51212 1.24992 0.94688 0.99141 0.94510 0.86759 0.80272 0.83527 0.78587 1.20263 1.21553 1.18996 1.21086 0.89460 0.94451 1.50906 0.91166 1.19579 0.96393 0.91812 0.96712 1.22221 0.83255 1.00371 1.00136 1.62045 1.10085 1.20301 1.33915 1.22095 0.93146 1.01432 0.90671 1.21625 0.96014 0.93943 1.02871 1.21241 0.86034 1.00735 1.01588 0.87842 1.23634 0.91029 0.72384 0.80210 1.90669 1.73764 1.45631 1.29804 1.84571 1.25577 1.77406 1.45315 1.21088 0.94179 0.96908 0.95752 0.89396 1.21781 1.01570 0.94927 0.97804 1.21486 0.95420 1.00440 0.97917 1.21553 0.95506 0.97087 1.01487 1.21695 1.00622 0.95609 0.97466 1.21535 0.92869 0.89799 0.97256 0.94550 0.92756 0.96158 0.96700 0.95638 0.90680 0.89188 0.94967 0.90550 0.90411 0.73547 0.90121 0.92673 0.92358 0.91835 0.92292 0.91905 0.90842 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.17 3.98 -27.88 -0.11 -0.28 16 10 C 0.07 1.30 4.62 -3.82 -0.02 1.29 16 11 N -0.54 -8.87 4.50 -226.68 -1.02 -9.89 16 12 C 0.05 0.81 5.29 -3.83 -0.02 0.79 16 13 C -0.11 -1.30 5.31 -26.65 -0.14 -1.44 16 14 C -0.08 -0.87 2.21 -91.65 -0.20 -1.08 16 15 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 16 C 0.48 5.43 7.36 36.01 0.26 5.70 16 17 O -0.51 -6.89 14.59 -18.75 -0.27 -7.17 16 18 O -0.52 -4.49 13.35 -39.26 -0.52 -5.02 16 19 C -0.06 -0.75 1.28 -90.57 -0.12 -0.87 16 20 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 21 C -0.12 -1.38 4.93 -26.74 -0.13 -1.51 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 24 C -0.12 -1.56 4.83 -26.70 -0.13 -1.69 16 25 C 0.09 1.30 1.69 -67.72 -0.11 1.19 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 29 H 0.01 0.35 5.49 -51.93 -0.29 0.06 16 30 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.07 1.47 5.66 -51.93 -0.29 1.18 16 32 H 0.09 1.48 6.23 -51.93 -0.32 1.15 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 1.80 9.10 45.56 0.41 2.21 16 37 H 0.08 0.98 5.74 -51.93 -0.30 0.68 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.06 6.12 -51.93 -0.32 0.74 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -31.82 331.03 -8.76 -40.58 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.57 Total: 0.35 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.47 Total: -13.91 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.25 Total: -36.95 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.80 Total: -12.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.82 -8.76 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.518 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds