Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47213 * 269.99969 * 3 2 1 5 5 H 1.48498 * 109.47250 * 30.00083 * 3 2 1 6 6 H 1.48507 * 109.46933 * 150.00131 * 3 2 1 7 7 C 1.37875 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99856 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99834 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47023 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.46851 * 110.99742 * 45.81692 * 11 10 9 13 13 C 1.53035 * 109.55744 * 185.73566 * 12 11 10 14 14 C 1.53122 * 109.30031 * 300.90155 * 13 12 11 15 15 H 1.09004 * 109.52975 * 297.72633 * 14 13 12 16 16 C 1.50699 * 109.52947 * 177.57852 * 14 13 12 17 17 O 1.20824 * 119.99702 * 239.99188 * 16 14 13 18 18 O 1.34231 * 120.00214 * 60.00382 * 16 14 13 19 19 C 1.53156 * 109.11087 * 57.68566 * 14 13 12 20 20 H 1.09000 * 109.54988 * 182.21365 * 19 14 13 21 21 C 1.53021 * 109.30816 * 61.88837 * 19 14 13 22 22 C 1.52987 * 109.49901 * 180.50554 * 21 19 14 23 23 C 1.53007 * 109.47357 * 60.03849 * 22 21 19 24 24 C 1.52998 * 109.44478 * 299.97103 * 23 22 21 25 25 C 1.46836 * 111.00012 * 170.00096 * 11 10 9 26 26 H 1.09001 * 109.44281 * 294.07714 * 25 11 10 27 27 H 0.96994 * 120.00676 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47715 * 59.99609 * 9 7 2 29 29 H 1.09002 * 109.46846 * 299.99000 * 9 7 2 30 30 H 1.09001 * 109.47367 * 59.99477 * 10 9 7 31 31 H 1.09001 * 109.46951 * 300.00206 * 10 9 7 32 32 H 1.08997 * 109.45798 * 305.75919 * 12 11 10 33 33 H 1.08999 * 109.45959 * 65.71697 * 12 11 10 34 34 H 1.09004 * 109.49691 * 60.84719 * 13 12 11 35 35 H 1.08997 * 109.49848 * 180.94817 * 13 12 11 36 36 H 0.96697 * 116.99879 * 180.02562 * 18 16 14 37 37 H 1.09002 * 109.46810 * 300.51507 * 21 19 14 38 38 H 1.09001 * 109.46718 * 60.50431 * 21 19 14 39 39 H 1.08995 * 109.47481 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.47048 * 300.04015 * 22 21 19 41 41 H 1.08993 * 109.47394 * 59.96171 * 23 22 21 42 42 H 1.09000 * 109.47574 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46824 * 299.99180 * 24 23 22 44 44 H 1.08993 * 109.46884 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 7 5.4907 -2.6363 -0.0001 12 6 6.0168 -1.6808 0.9831 13 6 7.5400 -1.6024 0.8569 14 6 8.1396 -2.9912 1.0940 15 1 7.9083 -3.3198 2.1073 16 6 9.6345 -2.9322 0.9124 17 8 10.1678 -3.6125 0.0683 18 8 10.3735 -2.1240 1.6886 19 6 7.5397 -3.9753 0.0855 20 1 7.9323 -4.9747 0.2732 21 6 7.9064 -3.5329 -1.3327 22 6 7.2985 -4.5062 -2.3445 23 6 5.7761 -4.5156 -2.1921 24 6 5.4089 -4.9587 -0.7745 25 6 6.0169 -3.9863 0.2378 26 1 5.7555 -4.3050 1.2468 27 1 -0.4851 0.8399 -0.0004 28 1 3.8746 -0.6806 0.8904 29 1 3.8752 -0.6796 -0.8896 30 1 3.6587 -3.1501 -0.8903 31 1 3.6580 -3.1504 0.8897 32 1 5.5862 -0.6965 0.7993 33 1 5.7524 -2.0109 1.9877 34 1 7.8049 -1.2575 -0.1426 35 1 7.9311 -0.9057 1.5983 36 1 11.3282 -2.1200 1.5346 37 1 7.5166 -2.5311 -1.5130 38 1 8.9909 -3.5258 -1.4420 39 1 7.5604 -4.1910 -3.3545 40 1 7.6879 -5.5082 -2.1640 41 1 5.3868 -3.5136 -2.3719 42 1 5.3429 -5.2087 -2.9133 43 1 5.7984 -5.9608 -0.5948 44 1 4.3245 -4.9651 -0.6654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -103.913135 kcal Electronic energy + Delta-G solvation = -23821.217454 eV Core-core repulsion = 20544.470144 eV Total energy + Delta-G solvation = -3276.747310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13639 -39.46541 -36.39978 -35.58210 -34.56216 -32.72412 -30.55267 -29.78099 -29.03257 -26.38550 -24.00641 -23.04373 -22.38743 -21.82771 -20.36981 -19.69634 -18.22446 -18.05823 -16.90580 -16.54167 -16.05868 -15.19592 -15.05774 -14.92687 -14.64344 -14.02248 -13.76934 -13.48759 -13.19908 -12.95701 -12.65821 -12.61788 -12.25695 -12.21421 -11.88747 -11.60440 -11.52907 -11.27876 -11.09790 -10.94290 -10.80102 -10.58687 -10.47662 -10.34561 -10.09954 -9.86687 -9.81286 -9.65374 -9.47099 -9.13107 -8.54411 -7.77033 -6.05646 -4.03777 2.07023 2.90468 3.30408 3.37766 3.39829 4.25475 4.43854 4.46909 4.69932 4.84905 5.05041 5.13508 5.15048 5.28734 5.39173 5.42350 5.51853 5.57747 5.61535 5.66677 5.74299 5.79555 5.81975 5.98116 6.02957 6.12735 6.17965 6.19604 6.27153 6.31402 6.34922 6.43131 6.48582 6.56186 6.64266 6.74920 6.79829 7.15295 7.32722 7.56163 7.64865 7.76941 7.84611 8.51929 8.98808 9.56675 11.07817 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.005187 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.196875 B = 5396.536151 C = 6276.731185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C 0.071 3.929 11 N -0.531 5.531 12 C 0.051 3.949 13 C -0.108 4.108 14 C -0.078 4.078 15 H 0.103 0.897 16 C 0.484 3.516 17 O -0.509 6.509 18 O -0.517 6.517 19 C -0.058 4.058 20 H 0.074 0.926 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.112 4.112 25 C 0.091 3.909 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.406 0.594 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.293 -6.873 1.560 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.056 4.056 11 N -0.256 5.256 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.097 4.097 15 H 0.121 0.879 16 C 0.327 3.673 17 O -0.397 6.397 18 O -0.329 6.329 19 C -0.077 4.077 20 H 0.093 0.907 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.017 4.017 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.001 -6.802 0.935 20.203 hybrid contribution 0.674 0.597 0.821 1.218 sum 19.675 -6.205 1.756 20.705 Atomic orbital electron populations 1.69908 1.06316 1.26891 1.51133 1.24996 0.94691 0.99115 0.94536 0.86771 0.80248 0.83629 0.78547 1.20254 1.21515 1.19065 1.21065 0.89385 0.94469 1.50902 0.91128 1.19724 0.96826 0.91981 0.96652 1.22142 0.83446 1.00048 0.99948 1.62063 1.09618 1.05185 1.48730 1.22179 0.92891 0.98886 0.93781 1.21683 0.96167 0.93508 1.03252 1.21245 0.85997 0.99969 1.02498 0.87880 1.23655 0.91014 0.75304 0.77344 1.90644 1.73956 1.41901 1.33234 1.84575 1.25448 1.62600 1.60254 1.21057 0.94326 0.97328 0.95024 0.90719 1.21810 1.01195 1.00223 0.92595 1.21416 0.95751 0.98937 0.98597 1.21455 0.95600 1.02566 0.95540 1.21576 1.00883 0.97213 0.95268 1.21542 0.93062 0.90090 0.97055 0.94619 0.92736 0.96420 0.96160 0.90904 0.95672 0.88777 0.94954 0.90324 0.90617 0.73591 0.90643 0.90526 0.92633 0.93034 0.90203 0.93044 0.92283 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.33 3.29 -27.88 -0.09 -0.42 16 10 C 0.07 1.36 4.21 -3.82 -0.02 1.34 16 11 N -0.53 -8.41 3.16 -226.71 -0.72 -9.13 16 12 C 0.05 0.75 4.85 -3.83 -0.02 0.74 16 13 C -0.11 -1.31 4.95 -26.65 -0.13 -1.45 16 14 C -0.08 -0.89 2.48 -91.63 -0.23 -1.11 16 15 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.48 5.43 7.33 36.01 0.26 5.69 16 17 O -0.51 -6.86 14.31 -18.75 -0.27 -7.12 16 18 O -0.52 -4.55 13.35 -39.26 -0.52 -5.07 16 19 C -0.06 -0.72 1.72 -90.51 -0.16 -0.88 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.12 -1.57 4.39 -26.73 -0.12 -1.69 16 22 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 23 C -0.11 -1.51 5.68 -26.73 -0.15 -1.66 16 24 C -0.11 -1.47 4.93 -26.75 -0.13 -1.60 16 25 C 0.09 1.25 1.98 -67.74 -0.13 1.11 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.40 5.27 -51.93 -0.27 0.13 16 29 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 30 H 0.07 1.43 6.44 -51.93 -0.33 1.09 16 31 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.09 1.57 5.82 -51.93 -0.30 1.27 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.00 6.54 -51.93 -0.34 0.66 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 1.84 9.10 45.56 0.41 2.25 16 37 H 0.08 1.08 5.94 -51.93 -0.31 0.77 16 38 H 0.08 1.06 5.37 -51.93 -0.28 0.78 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.22 7.21 -51.93 -0.37 0.85 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -31.20 323.33 -8.37 -39.57 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.34 Total: 1.38 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.50 Total: -14.44 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.06 Total: -36.00 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.79 Total: -12.20 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.20 -8.37 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.344 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds