Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99680 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99620 * 3 2 1 5 5 H 1.48496 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47403 * 120.00170 * 3 2 1 7 7 C 1.37875 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47468 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47500 * 180.02562 * 10 9 7 12 12 C 1.46871 * 110.99869 * 293.95665 * 11 10 9 13 13 C 1.53020 * 109.59050 * 174.28968 * 12 11 10 14 14 C 1.53150 * 109.32542 * 59.05561 * 13 12 11 15 15 H 1.09002 * 109.53658 * 182.51561 * 14 13 12 16 16 C 1.50698 * 109.53454 * 62.35889 * 14 13 12 17 17 O 1.20820 * 120.00278 * 240.15638 * 16 14 13 18 18 O 1.34237 * 119.99905 * 60.15818 * 16 14 13 19 19 C 1.53084 * 109.15166 * 302.44021 * 14 13 12 20 20 H 1.08998 * 109.49385 * 297.83178 * 19 14 13 21 21 C 1.52970 * 109.59760 * 177.61233 * 19 14 13 22 22 C 1.53033 * 109.39059 * 180.02562 * 21 19 14 23 23 C 1.52985 * 109.52384 * 59.94152 * 22 21 19 24 24 C 1.53351 * 109.41863 * 300.02292 * 23 22 21 25 25 C 1.46803 * 111.00244 * 169.82651 * 11 10 9 26 26 H 1.09004 * 109.44754 * 65.92094 * 25 11 10 27 27 H 0.96999 * 120.00042 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46778 * 59.99919 * 9 7 2 29 29 H 1.09000 * 109.47194 * 300.00507 * 9 7 2 30 30 H 1.08999 * 109.46858 * 60.00075 * 10 9 7 31 31 H 1.09000 * 109.47475 * 300.00516 * 10 9 7 32 32 H 1.08999 * 109.45400 * 54.25139 * 12 11 10 33 33 H 1.09001 * 109.43079 * 294.31671 * 12 11 10 34 34 H 1.09003 * 109.49901 * 299.09895 * 13 12 11 35 35 H 1.08999 * 109.52134 * 179.02440 * 13 12 11 36 36 H 0.96701 * 116.99876 * 179.97438 * 18 16 14 37 37 H 1.08997 * 109.48298 * 300.02378 * 21 19 14 38 38 H 1.08997 * 109.48581 * 60.05949 * 21 19 14 39 39 H 1.08999 * 109.45859 * 179.97438 * 22 21 19 40 40 H 1.08995 * 109.45989 * 299.94044 * 22 21 19 41 41 H 1.09004 * 109.46153 * 60.16700 * 23 22 21 42 42 H 1.09000 * 109.45854 * 180.13656 * 23 22 21 43 43 H 1.08995 * 109.70824 * 300.12014 * 24 23 22 44 44 H 1.09000 * 109.36390 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5109 -4.9343 0.0020 12 6 0.7662 -5.1115 1.2554 13 6 -0.0965 -6.3722 1.1657 14 6 0.8029 -7.5845 0.9074 15 1 0.1881 -8.4779 0.7985 16 6 1.7516 -7.7637 2.0645 17 8 2.9447 -7.7145 1.8808 18 8 1.2710 -7.9782 3.2994 19 6 1.6015 -7.3527 -0.3779 20 1 0.9160 -7.2601 -1.2203 21 6 2.5473 -8.5315 -0.6140 22 6 3.3434 -8.2947 -1.8993 23 6 4.1561 -7.0053 -1.7671 24 6 3.2056 -5.8256 -1.5292 25 6 2.4161 -6.0644 -0.2403 26 1 3.1076 -6.1614 0.5967 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6248 -2.5563 0.8919 30 1 2.8727 -3.6039 0.8909 31 1 2.8714 -3.6047 -0.8890 32 1 0.1265 -4.2451 1.4232 33 1 1.4681 -5.2102 2.0834 34 1 -0.8097 -6.2676 0.3480 35 1 -0.6354 -6.5122 2.1027 36 1 1.9182 -8.0875 4.0095 37 1 3.2337 -8.6211 0.2279 38 1 1.9674 -9.4495 -0.7096 39 1 4.0181 -9.1339 -2.0684 40 1 2.6564 -8.2060 -2.7408 41 1 4.8454 -7.0950 -0.9274 42 1 4.7208 -6.8364 -2.6840 43 1 2.5148 -5.7354 -2.3675 44 1 3.7855 -4.9075 -1.4356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = -108.254643 kcal Electronic energy + Delta-G solvation = -23818.375208 eV Core-core repulsion = 20541.439635 eV Total energy + Delta-G solvation = -3276.935572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.22800 -38.90279 -36.31382 -35.84639 -34.37635 -32.78244 -30.11736 -29.99118 -28.76839 -25.79782 -24.04446 -22.77492 -22.73485 -21.66492 -19.75666 -19.70704 -19.48766 -17.95084 -16.51426 -16.08595 -15.91044 -15.33281 -14.92304 -14.41556 -14.38214 -14.32255 -13.72458 -13.39674 -13.24425 -12.96361 -12.72390 -12.35959 -11.98190 -11.88697 -11.79669 -11.73626 -11.54193 -11.11878 -10.99903 -10.87285 -10.81411 -10.71783 -10.59070 -10.48976 -9.97969 -9.89717 -9.78398 -9.47078 -9.24225 -9.06102 -8.29463 -7.59677 -5.97021 -3.99028 2.18625 3.02472 3.35092 3.39307 3.41931 4.33834 4.49082 4.56027 4.70620 4.88910 5.03075 5.13571 5.23419 5.37521 5.38832 5.45000 5.46079 5.63366 5.69045 5.73860 5.74300 5.81919 5.86697 5.96410 6.07889 6.17635 6.22736 6.27533 6.30143 6.33510 6.34576 6.45368 6.52589 6.54298 6.60371 6.81549 7.05811 7.57307 7.65570 7.85515 7.89046 7.94896 8.12337 8.47490 9.08027 9.64374 11.14310 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.004794 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.561520 B = 5839.560412 C = 6591.550088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.030 3.970 10 C 0.060 3.940 11 N -0.534 5.534 12 C 0.051 3.949 13 C -0.108 4.108 14 C -0.077 4.077 15 H 0.105 0.895 16 C 0.482 3.518 17 O -0.505 6.505 18 O -0.518 6.518 19 C -0.061 4.061 20 H 0.090 0.910 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.114 4.114 25 C 0.079 3.921 26 H 0.058 0.942 27 H 0.260 0.740 28 H 0.024 0.976 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.019 0.981 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.405 0.595 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -19.254 1.430 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.067 4.067 11 N -0.258 5.258 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.096 4.096 15 H 0.123 0.877 16 C 0.325 3.675 17 O -0.393 6.393 18 O -0.330 6.330 19 C -0.079 4.079 20 H 0.108 0.892 21 C -0.169 4.169 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.029 4.029 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.037 0.963 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.264 0.736 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.789 -19.043 0.680 19.139 hybrid contribution 1.448 0.881 1.213 2.085 sum 3.238 -18.162 1.893 18.546 Atomic orbital electron populations 1.69960 1.05989 1.26616 1.50734 1.24974 0.94813 0.99083 0.95343 0.86678 0.79592 0.83245 0.78580 1.20242 1.21284 1.20352 1.21168 0.92930 0.91136 1.50792 0.92944 1.19084 0.93957 0.90097 0.97639 1.22399 0.96883 0.88253 0.99144 1.62052 1.27911 1.02460 1.33423 1.22129 0.96802 0.98278 0.90467 1.21656 0.97510 0.92150 1.03246 1.21257 0.96057 1.01640 0.90679 0.87698 1.23680 0.88870 0.71373 0.83566 1.90606 1.18038 1.46290 1.84346 1.84559 1.45658 1.83757 1.18977 1.21094 0.96689 0.95249 0.94918 0.89178 1.21934 0.98944 0.96468 0.99562 1.21469 0.98621 0.97429 0.97592 1.21569 0.97906 0.94731 1.01226 1.21716 0.97931 0.97884 0.97631 1.21769 0.93290 0.89887 0.97975 0.92458 0.92993 0.95715 0.96665 0.96631 0.91350 0.88894 0.96294 0.89324 0.90541 0.73628 0.89304 0.92751 0.92539 0.92214 0.92136 0.92264 0.91257 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.77 4.91 -27.89 -0.14 0.64 16 10 C 0.06 1.30 4.62 -3.83 -0.02 1.28 16 11 N -0.53 -9.81 4.50 -226.69 -1.02 -10.83 16 12 C 0.05 0.88 5.08 -3.83 -0.02 0.86 16 13 C -0.11 -1.40 5.55 -26.64 -0.15 -1.55 16 14 C -0.08 -0.92 2.70 -91.65 -0.25 -1.16 16 15 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 16 C 0.48 6.10 5.95 36.00 0.21 6.32 16 17 O -0.50 -7.56 12.12 -18.74 -0.23 -7.78 16 18 O -0.52 -5.30 13.30 -39.28 -0.52 -5.82 16 19 C -0.06 -0.79 1.88 -90.57 -0.17 -0.96 16 20 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 21 C -0.13 -1.54 4.89 -26.73 -0.13 -1.67 16 22 C -0.11 -1.26 5.92 -26.72 -0.16 -1.42 16 23 C -0.12 -1.46 5.94 -26.56 -0.16 -1.61 16 24 C -0.11 -1.71 4.85 -26.54 -0.13 -1.84 16 25 C 0.08 1.25 1.44 -67.73 -0.10 1.16 16 26 H 0.06 1.03 5.71 -51.93 -0.30 0.73 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.02 0.42 6.44 -51.93 -0.33 0.08 16 30 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 1.46 5.66 -51.93 -0.29 1.17 16 32 H 0.09 1.77 6.23 -51.93 -0.32 1.44 16 33 H 0.02 0.34 7.32 -51.93 -0.38 -0.04 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.41 2.54 9.10 45.56 0.41 2.96 16 37 H 0.09 1.19 5.33 -51.93 -0.28 0.91 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 1.12 6.12 -51.93 -0.32 0.80 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -31.88 327.94 -9.14 -41.02 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.42 Total: 1.47 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.61 Total: -13.60 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.28 Total: -37.07 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.75 Total: -13.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.88 -9.14 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.235 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds