Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47180 * 269.99766 * 3 2 1 5 5 H 1.48497 * 109.47007 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.46960 * 149.99798 * 3 2 1 7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.43164 * 57.46464 * 9 7 2 11 11 C 1.54268 * 110.48760 * 294.77471 * 9 7 2 12 12 C 1.53876 * 106.59992 * 217.71212 * 11 9 7 13 13 C 1.54268 * 106.59607 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.48471 * 264.93239 * 13 12 11 15 15 N 1.46902 * 110.48391 * 142.29090 * 13 12 11 16 16 C 1.46901 * 111.00232 * 90.22131 * 15 13 12 17 17 C 1.53001 * 109.47084 * 275.00240 * 16 15 13 18 18 C 1.53004 * 109.47003 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47076 * 59.99475 * 18 17 16 20 20 C 1.50701 * 109.46692 * 179.97438 * 19 18 17 21 21 O 1.20825 * 120.00062 * 120.00732 * 20 19 18 22 22 O 1.34230 * 120.00274 * 299.99825 * 20 19 18 23 23 C 1.52998 * 109.47278 * 300.00167 * 19 18 17 24 24 C 1.52991 * 109.47182 * 60.00174 * 23 19 18 25 25 C 1.54882 * 104.19992 * 23.60931 * 13 12 11 26 26 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.02839 * 337.00222 * 11 9 7 28 28 H 1.09000 * 110.02607 * 98.37709 * 11 9 7 29 29 H 1.08994 * 110.02975 * 119.28475 * 12 11 9 30 30 H 1.08998 * 110.02933 * 240.72065 * 12 11 9 31 31 H 1.00900 * 110.99822 * 214.17495 * 15 13 12 32 32 H 1.09004 * 109.46618 * 34.99840 * 16 15 13 33 33 H 1.09002 * 109.46832 * 300.00069 * 17 16 15 34 34 H 1.08999 * 109.47547 * 59.99597 * 17 16 15 35 35 H 1.09004 * 109.46556 * 299.99512 * 18 17 16 36 36 H 1.08997 * 109.47057 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46896 * 60.00517 * 19 18 17 38 38 H 0.96693 * 117.00135 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46987 * 299.99750 * 23 19 18 40 40 H 1.09000 * 109.46873 * 179.97438 * 23 19 18 41 41 H 1.09002 * 109.47644 * 179.97438 * 24 23 19 42 42 H 1.09002 * 109.47506 * 59.99893 * 24 23 19 43 43 H 1.08994 * 110.76048 * 203.74464 * 25 13 12 44 44 H 1.09004 * 110.75771 * 80.36858 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5845 -2.5538 -0.8614 11 6 0.4570 -2.6643 1.3118 12 6 0.5417 -4.1527 1.6926 13 6 1.3848 -4.8401 0.5987 14 1 0.7387 -5.2741 -0.1644 15 7 2.2503 -5.8704 1.1881 16 6 1.5726 -7.1734 1.2178 17 6 0.7096 -7.2709 2.4774 18 6 0.0043 -8.6283 2.5086 19 6 1.0492 -9.7459 2.5184 20 6 0.3544 -11.0828 2.5497 21 8 0.5310 -11.8765 1.6561 22 8 -0.4605 -11.3919 3.5706 23 6 1.9121 -9.6483 1.2587 24 6 2.6174 -8.2910 1.2275 25 6 2.2370 -3.6940 -0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 0.9014 -2.0521 2.0965 28 1 -0.5829 -2.3761 1.1578 29 1 1.0273 -4.2630 2.6622 30 1 -0.4572 -4.5878 1.7232 31 1 3.1283 -5.9306 0.6946 32 1 0.9404 -7.2742 0.3356 33 1 1.3419 -7.1700 3.3596 34 1 -0.0344 -6.4744 2.4707 35 1 -0.6278 -8.7296 1.6264 36 1 -0.6108 -8.6976 3.4058 37 1 1.6813 -9.6446 3.4006 38 1 -0.8834 -12.2612 3.5470 39 1 1.2799 -9.7497 0.3765 40 1 2.6568 -10.4442 1.2659 41 1 3.2325 -8.2216 0.3304 42 1 3.2496 -8.1897 2.1097 43 1 2.5504 -3.9359 -1.0159 44 1 3.0998 -3.4831 0.6314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = -127.864732 kcal Electronic energy + Delta-G solvation = -22398.436420 eV Core-core repulsion = 19120.650491 eV Total energy + Delta-G solvation = -3277.785930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -40.81916 -38.86830 -37.13059 -36.37052 -33.98667 -32.10861 -30.97890 -29.51804 -28.05476 -26.18316 -24.02843 -23.37949 -22.74976 -20.92743 -20.07676 -19.22398 -18.89793 -18.28660 -16.98652 -16.25770 -16.13031 -15.36532 -15.09098 -14.72550 -14.50043 -14.31264 -13.91178 -13.82659 -13.02945 -12.75673 -12.41161 -12.30194 -12.12654 -12.00743 -11.85907 -11.63798 -11.39600 -11.25911 -11.02805 -10.81716 -10.78425 -10.58253 -10.43702 -10.28940 -10.24091 -9.99291 -9.76066 -9.47419 -9.05558 -8.67338 -8.33187 -8.07847 -5.96513 -3.98630 1.91845 2.75072 3.33080 3.39886 3.43220 4.26578 4.34971 4.46695 4.48268 4.81691 4.96477 5.02623 5.11895 5.27750 5.31230 5.33052 5.36216 5.55395 5.62714 5.67600 5.74361 5.82145 5.86224 6.00418 6.02588 6.05783 6.16670 6.23434 6.26564 6.45838 6.58228 6.69057 6.83450 6.90498 7.03768 7.23346 7.40496 7.59627 7.60181 7.72136 7.79766 7.96444 8.07567 8.51787 9.04373 9.64998 11.13424 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048172 B = 0.002930 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.111428 B = 9553.181533 C = 9880.816318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.028 0.972 11 C -0.098 4.098 12 C -0.112 4.112 13 C 0.080 3.920 14 H 0.039 0.961 15 N -0.680 5.680 16 C 0.085 3.915 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.078 4.078 20 C 0.482 3.518 21 O -0.518 6.518 22 O -0.516 6.516 23 C -0.100 4.100 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.338 0.662 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.408 0.592 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -20.425 6.068 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.029 4.029 14 H 0.057 0.943 15 N -0.310 5.310 16 C -0.025 4.025 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.097 4.097 20 C 0.325 3.675 21 O -0.406 6.406 22 O -0.327 6.327 23 C -0.138 4.138 24 C -0.158 4.158 25 C -0.155 4.155 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.156 0.844 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.681 -19.962 6.478 20.998 hybrid contribution 0.085 0.060 -0.945 0.950 sum 0.766 -19.902 5.533 20.671 Atomic orbital electron populations 1.69974 1.05869 1.26330 1.50737 1.24985 0.94823 0.98975 0.95253 0.86661 0.79946 0.83789 0.77996 1.20817 1.21328 1.19937 1.21166 0.92756 0.90567 1.50482 0.92738 1.19380 0.92347 0.91378 0.93689 0.95415 1.22079 1.00557 0.91299 0.99685 1.22305 0.96916 0.97624 0.98169 1.22574 0.94212 0.91368 0.94765 0.94293 1.60620 1.06687 1.04633 1.59089 1.21601 0.94774 0.88878 0.97237 1.21604 0.99160 0.95342 0.98506 1.21569 0.96652 0.93543 1.03067 1.21150 0.97720 0.88683 1.02181 1.23718 0.75987 0.89558 0.78252 1.90715 1.61113 1.51214 1.37568 1.84562 1.58218 1.42040 1.47923 1.21411 0.98623 0.97755 0.96050 1.21735 0.97964 0.93213 1.02885 1.22770 0.99184 0.95648 0.97941 0.93173 0.93094 0.93092 0.92116 0.94270 0.84380 0.94046 0.90973 0.90581 0.91582 0.90446 0.87151 0.73393 0.91023 0.90982 0.91413 0.90763 0.93910 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 12.63 55.43 0.70 -25.09 16 2 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.05 8.36 -34.44 -0.29 -14.34 16 8 H 0.05 1.48 7.77 -52.48 -0.41 1.07 16 9 C 0.05 1.26 2.73 -90.10 -0.25 1.02 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.10 -2.27 5.60 -25.61 -0.14 -2.42 16 12 C -0.11 -2.09 5.16 -25.61 -0.13 -2.22 16 13 C 0.08 1.38 3.17 -66.06 -0.21 1.17 16 14 H 0.04 0.68 7.45 -51.93 -0.39 0.30 16 15 N -0.68 -9.60 6.14 -98.01 -0.60 -10.20 16 16 C 0.09 1.00 2.49 -67.71 -0.17 0.83 16 17 C -0.11 -1.19 5.25 -26.73 -0.14 -1.33 16 18 C -0.11 -1.01 5.14 -26.73 -0.14 -1.15 16 19 C -0.08 -0.68 2.63 -91.77 -0.24 -0.92 16 20 C 0.48 4.62 7.63 36.01 0.27 4.90 16 21 O -0.52 -6.50 16.74 -18.75 -0.31 -6.81 16 22 O -0.52 -3.78 13.33 -39.26 -0.52 -4.30 16 23 C -0.10 -0.92 4.49 -26.74 -0.12 -1.04 16 24 C -0.12 -1.14 5.19 -26.74 -0.14 -1.28 16 25 C -0.12 -2.37 5.65 -24.73 -0.14 -2.51 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.05 1.27 7.83 -51.93 -0.41 0.86 16 28 H 0.05 1.26 8.06 -51.93 -0.42 0.85 16 29 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 30 H 0.04 0.68 7.41 -51.93 -0.38 0.30 16 31 H 0.34 4.47 8.03 -39.29 -0.32 4.16 16 32 H 0.04 0.53 7.44 -51.93 -0.39 0.14 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.96 6.13 -51.93 -0.32 0.64 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.41 1.32 9.10 45.56 0.41 1.73 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -30.75 343.42 -9.31 -40.06 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.80 Total: 2.47 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.93 Total: -17.68 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.10 Total: -35.29 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.84 Total: -11.11 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.75 -9.31 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.804 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds