Wall clock time and date at job start Tue Mar 31 2020 08:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47450 * 2 1 4 4 C 1.52998 * 109.47306 * 239.99635 * 2 1 3 5 5 C 1.50703 * 109.46861 * 60.00299 * 4 2 1 6 6 H 1.07991 * 120.00163 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99826 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00067 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47294 * 59.99703 * 9 7 5 11 11 H 1.48495 * 109.47299 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46931 * 300.00148 * 9 7 5 13 13 C 1.53007 * 109.46601 * 119.99943 * 2 1 3 14 14 N 1.46898 * 109.46901 * 299.99703 * 13 2 1 15 15 C 1.46902 * 110.99675 * 180.02562 * 14 13 2 16 16 H 1.09003 * 110.67277 * 328.23743 * 15 14 13 17 17 C 1.54886 * 110.75503 * 91.67330 * 15 14 13 18 18 C 1.54272 * 104.19616 * 156.25909 * 17 15 14 19 19 H 1.08999 * 117.06008 * 196.79128 * 18 17 15 20 20 C 1.55470 * 118.30315 * 39.97080 * 18 17 15 21 21 C 1.53001 * 59.83966 * 266.71204 * 20 18 17 22 22 C 1.50706 * 119.29767 * 248.28679 * 21 20 18 23 23 O 1.20825 * 119.99859 * 70.94853 * 22 21 20 24 24 O 1.34224 * 120.00295 * 250.95812 * 22 21 20 25 25 C 1.54265 * 118.19787 * 94.15059 * 21 20 18 26 26 H 1.09000 * 109.47414 * 300.00313 * 1 2 3 27 27 H 1.09004 * 109.46669 * 60.00313 * 1 2 3 28 28 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47308 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46747 * 300.00286 * 3 2 1 31 31 H 1.09000 * 109.47068 * 59.99475 * 3 2 1 32 32 H 1.08995 * 109.47278 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47380 * 300.00625 * 4 2 1 34 34 H 0.97001 * 119.99397 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46744 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47260 * 60.00359 * 13 2 1 37 37 H 1.00900 * 111.00094 * 56.04996 * 14 13 2 38 38 H 1.08997 * 110.48821 * 274.92905 * 17 15 14 39 39 H 1.08998 * 110.49124 * 37.58116 * 17 15 14 40 40 H 1.08993 * 117.95243 * 159.52422 * 20 18 17 41 41 H 1.09005 * 117.28444 * 14.18976 * 20 18 17 42 42 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 43 43 H 1.09003 * 110.48567 * 76.89697 * 25 21 20 44 44 H 1.09007 * 110.48328 * 199.53816 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2493 0.3992 -5.2572 10 1 1.7443 1.7993 -5.2567 11 1 1.7443 -0.3009 -6.4696 12 1 -0.2357 0.3993 -5.2577 13 6 2.0399 -0.7213 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0216 -0.6945 3.6704 16 1 2.1233 -1.7677 3.5090 17 6 3.3593 -0.0784 4.1500 18 6 3.4044 -0.3993 5.6583 19 1 4.1087 0.1694 6.2654 20 6 2.9103 -1.7960 6.1298 21 6 1.9473 -0.6073 6.1071 22 6 1.4405 -0.0438 7.4097 23 8 2.1873 0.5722 8.1327 24 8 0.1595 -0.2263 7.7668 25 6 1.0677 -0.4056 4.8559 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7490 -1.2492 34 1 2.8624 -1.8820 -4.7335 35 1 3.1299 -0.7209 1.2496 36 1 1.6766 -1.7489 1.2493 37 1 0.5437 0.0414 2.4401 38 1 4.1999 -0.5441 3.6357 39 1 3.3622 0.9997 3.9891 40 1 3.2441 -2.1539 7.1037 41 1 2.7795 -2.5635 5.3669 42 1 -0.1192 0.1534 8.6113 43 1 0.2359 -1.1101 4.8568 44 1 0.7005 0.6197 4.8090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603591345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:49 Heat of formation + Delta-G solvation = -81.580511 kcal Electronic energy + Delta-G solvation = -22339.316444 eV Core-core repulsion = 19063.537549 eV Total energy + Delta-G solvation = -3275.778895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.07079 -39.26923 -37.38652 -36.36422 -34.14426 -32.21249 -29.42696 -28.93024 -26.88347 -26.33299 -25.30126 -24.55246 -22.72838 -22.13122 -19.99578 -19.41591 -18.20301 -17.82127 -17.15162 -16.23209 -15.90789 -15.76700 -14.99365 -14.61550 -14.31987 -13.89170 -13.76347 -13.47795 -13.21049 -12.83103 -12.59341 -12.27408 -12.03136 -11.97941 -11.86871 -11.59357 -11.45388 -11.11683 -10.97208 -10.87426 -10.81699 -10.78331 -10.49142 -10.39678 -10.23481 -10.12080 -9.94025 -9.68075 -9.01787 -8.83457 -8.31194 -8.14957 -5.96008 -3.96146 1.82312 2.66290 3.24268 3.34876 3.39608 3.41797 4.02241 4.15932 4.32913 4.49702 4.64342 4.83401 4.99543 5.16416 5.24007 5.29037 5.39742 5.40466 5.57308 5.67230 5.71290 5.73675 5.77742 5.92944 5.96581 6.01473 6.15602 6.16819 6.26869 6.34284 6.50813 6.66058 6.79143 6.83165 7.20916 7.22283 7.26454 7.38981 7.61207 7.63829 7.70669 7.85606 8.04288 8.48607 9.09092 9.66645 11.15641 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041734 B = 0.002983 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.751144 B = 9384.087197 C = 9603.803363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.677 5.677 15 C 0.077 3.923 16 H 0.056 0.944 17 C -0.087 4.087 18 C -0.117 4.117 19 H 0.124 0.876 20 C -0.123 4.123 21 C -0.157 4.157 22 C 0.525 3.475 23 O -0.516 6.516 24 O -0.510 6.510 25 C -0.082 4.082 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.341 0.659 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.409 0.591 43 H 0.075 0.925 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 0.472 21.130 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.309 5.309 15 C -0.034 4.034 16 H 0.074 0.926 17 C -0.125 4.125 18 C -0.135 4.135 19 H 0.141 0.859 20 C -0.160 4.160 21 C -0.159 4.159 22 C 0.367 3.633 23 O -0.405 6.405 24 O -0.321 6.321 25 C -0.120 4.120 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.161 0.839 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.268 0.732 43 H 0.094 0.906 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.647 0.835 20.799 20.881 hybrid contribution -1.096 -0.162 -0.244 1.135 sum -2.743 0.673 20.555 20.748 Atomic orbital electron populations 1.21771 0.96097 1.00357 1.00423 1.20637 0.94714 0.96162 0.94423 1.21595 0.99773 0.95776 1.00154 1.19111 0.96094 0.94938 0.90162 1.21204 1.30825 1.11926 0.90635 0.92350 1.25014 0.95406 0.95111 0.99043 1.69959 1.37237 1.23195 1.23396 0.86726 0.79137 0.79842 0.82699 1.20305 1.21454 1.20370 1.22167 0.99851 0.94588 0.89200 1.60576 1.16336 1.53320 1.00705 1.22496 0.94700 0.96455 0.89707 0.92582 1.22037 0.97435 1.02510 0.90511 1.23878 0.93366 0.98664 0.97639 0.85855 1.23468 0.98114 0.90956 1.03432 1.21657 0.95370 1.07222 0.91663 1.22081 0.79260 0.75774 0.86144 1.90716 1.57508 1.38801 1.53453 1.84540 1.29473 1.73977 1.44101 1.22014 0.96927 1.03057 0.90010 0.94801 0.91729 0.94109 0.94177 0.92744 0.93892 0.96698 0.96965 0.93112 0.91485 0.95784 0.83930 0.90705 0.89244 0.87613 0.87195 0.73212 0.90639 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.89 37.16 0.29 -2.03 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.75 7.65 -34.44 -0.26 -14.01 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.07 1.15 4.51 -3.82 -0.02 1.13 16 14 N -0.68 -9.03 5.61 -104.62 -0.59 -9.62 16 15 C 0.08 0.86 2.76 -65.72 -0.18 0.67 16 16 H 0.06 0.63 7.09 -51.93 -0.37 0.27 16 17 C -0.09 -0.94 6.46 -25.07 -0.16 -1.10 16 18 C -0.12 -1.14 6.77 -88.19 -0.60 -1.74 16 19 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.12 -1.04 9.74 -25.42 -0.25 -1.29 16 21 C -0.16 -1.55 2.80 -154.54 -0.43 -1.99 16 22 C 0.52 5.56 7.95 36.01 0.29 5.85 16 23 O -0.52 -6.85 17.54 -18.75 -0.33 -7.18 16 24 O -0.51 -4.13 13.36 -39.24 -0.52 -4.66 16 25 C -0.08 -0.82 5.80 -25.07 -0.15 -0.96 16 26 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 27 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 31 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.34 4.37 6.47 -39.29 -0.25 4.12 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.11 0.86 7.24 -51.93 -0.38 0.48 16 42 H 0.41 1.50 9.10 45.56 0.41 1.91 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -31.28 350.09 -8.43 -39.71 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.51 Total: 2.37 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.47 Total: -16.39 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.15 Total: -35.59 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.85 Total: -11.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.28 -8.43 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.874 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds