Wall clock time and date at job start Tue Mar 31 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99895 * 2 1 4 4 H 1.48498 * 109.47274 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47346 * 119.99906 * 3 2 1 6 6 H 1.48504 * 109.46960 * 239.99501 * 3 2 1 7 7 C 1.37878 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99687 * 185.09008 * 7 2 1 9 9 C 1.50696 * 120.00124 * 5.09808 * 7 2 1 10 10 C 1.53003 * 115.55044 * 279.33785 * 9 7 2 11 11 N 1.46898 * 109.47253 * 305.99490 * 10 9 7 12 12 C 1.46905 * 111.00078 * 185.10592 * 11 10 9 13 13 C 1.52999 * 109.46902 * 304.27208 * 12 11 10 14 14 C 1.50697 * 109.46672 * 293.87545 * 13 12 11 15 15 O 1.20822 * 120.00403 * 7.41040 * 14 13 12 16 16 O 1.34237 * 119.99681 * 187.40315 * 14 13 12 17 17 C 1.52996 * 109.47155 * 184.26895 * 12 11 10 18 18 C 1.53002 * 109.47242 * 299.99665 * 17 12 11 19 19 C 1.53004 * 109.47247 * 300.00492 * 18 17 12 20 20 C 1.53005 * 109.47215 * 59.99604 * 19 18 17 21 21 C 1.52997 * 109.47062 * 300.00170 * 20 19 18 22 22 C 1.53002 * 117.50269 * 133.63620 * 9 7 2 23 23 C 1.53003 * 117.50256 * 65.00953 * 9 7 2 24 24 H 0.96993 * 120.00265 * 355.00378 * 1 2 3 25 25 H 1.09008 * 109.46653 * 65.98794 * 10 9 7 26 26 H 1.08995 * 109.47410 * 185.98265 * 10 9 7 27 27 H 1.00902 * 110.99628 * 309.05268 * 11 10 9 28 28 H 1.08999 * 109.47621 * 53.87397 * 13 12 11 29 29 H 1.09001 * 109.46884 * 173.88454 * 13 12 11 30 30 H 0.96701 * 116.99604 * 179.97438 * 16 14 13 31 31 H 1.08995 * 109.47386 * 59.99861 * 17 12 11 32 32 H 1.09002 * 109.47130 * 180.02562 * 17 12 11 33 33 H 1.08995 * 109.47476 * 180.02562 * 18 17 12 34 34 H 1.09002 * 109.46622 * 60.00223 * 18 17 12 35 35 H 1.08999 * 109.46587 * 299.99354 * 19 18 17 36 36 H 1.08999 * 109.46922 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.46683 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.46836 * 60.00163 * 20 19 18 39 39 H 1.09002 * 109.46898 * 299.99949 * 21 20 19 40 40 H 1.08995 * 109.47201 * 180.02562 * 21 20 19 41 41 H 1.09005 * 117.49550 * 359.97438 * 22 9 7 42 42 H 1.08997 * 117.50416 * 145.01832 * 22 9 7 43 43 H 1.08995 * 117.49793 * 214.98075 * 23 9 7 44 44 H 1.08998 * 117.49157 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1958 0.0835 9 6 1.2555 -2.4966 -0.1149 10 6 0.6291 -3.0147 1.1814 11 7 1.6594 -3.0944 2.2254 12 6 1.1219 -3.7020 3.4502 13 6 -0.1066 -2.9160 3.9126 14 6 0.3125 -1.5312 4.3340 15 8 1.4470 -1.1601 4.1468 16 8 -0.5747 -0.7098 4.9172 17 6 2.1894 -3.6709 4.5458 18 6 3.4179 -4.4570 4.0833 19 6 3.0190 -5.9069 3.8007 20 6 1.9515 -5.9378 2.7051 21 6 0.7230 -5.1518 3.1676 22 6 1.7894 -3.5333 -1.1055 23 6 0.5035 -2.7660 -1.4198 24 1 -0.4850 0.8368 0.0732 25 1 -0.1600 -2.3340 1.5009 26 1 0.2074 -4.0051 1.0106 27 1 2.4690 -3.5990 1.8967 28 1 -0.8224 -2.8455 3.0936 29 1 -0.5691 -3.4281 4.7565 30 1 -0.2592 0.1686 5.1703 31 1 2.4736 -2.6381 4.7471 32 1 1.7907 -4.1222 5.4544 33 1 4.1782 -4.4353 4.8640 34 1 3.8167 -4.0062 3.1746 35 1 2.6203 -6.3576 4.7095 36 1 3.8941 -6.4667 3.4708 37 1 1.6671 -6.9707 2.5041 38 1 2.3503 -5.4870 1.7964 39 1 0.3242 -5.6027 4.0763 40 1 -0.0376 -5.1743 2.3873 41 1 2.6822 -3.2729 -1.6741 42 1 1.6945 -4.5846 -0.8338 43 1 -0.4373 -3.3125 -1.3548 44 1 0.5509 -2.0012 -2.1949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:29 Heat of formation + Delta-G solvation = -71.812537 kcal Electronic energy + Delta-G solvation = -24356.459323 eV Core-core repulsion = 21081.103999 eV Total energy + Delta-G solvation = -3275.355324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30106 -38.68054 -36.48766 -35.46261 -33.57632 -31.74834 -30.71735 -30.17397 -27.46880 -25.44730 -24.16284 -22.52454 -22.04019 -21.04056 -20.25992 -18.96964 -18.13393 -17.37941 -16.31365 -15.95955 -15.41629 -15.23350 -14.57625 -14.35435 -14.20747 -14.02400 -13.74946 -12.87046 -12.85313 -12.63352 -12.27295 -12.02885 -11.80158 -11.74568 -11.58784 -11.26352 -11.10634 -10.85633 -10.79886 -10.75300 -10.62176 -10.41084 -10.20834 -10.16324 -10.08821 -9.75773 -9.36076 -9.28843 -8.75426 -8.27429 -7.96360 -7.24240 -5.84257 -3.84647 2.93926 3.43963 3.46055 3.52474 3.58344 4.57851 4.81560 4.85732 4.97150 5.09285 5.33371 5.39185 5.45956 5.46503 5.51971 5.65082 5.70784 5.75433 5.86515 5.89343 5.98303 6.05668 6.13059 6.19716 6.23597 6.32210 6.38183 6.43095 6.49090 6.62026 6.63821 6.71784 6.76894 6.80580 7.03135 7.15602 7.19867 7.50957 7.62149 8.07951 8.16719 8.36139 8.58622 8.64408 9.10739 9.77787 11.25227 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.007905 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.419489 B = 3541.203092 C = 4443.755614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.292 1.292 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.461 4.461 8 H 0.056 0.944 9 C 0.054 3.946 10 C 0.102 3.898 11 N -0.638 5.638 12 C 0.130 3.870 13 C -0.101 4.101 14 C 0.474 3.526 15 O -0.467 6.467 16 O -0.533 6.533 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.218 4.218 23 C -0.163 4.163 24 H 0.255 0.745 25 H 0.074 0.926 26 H -0.005 1.005 27 H 0.336 0.664 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.402 0.598 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -9.542 9.632 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.053 3.947 10 C -0.027 4.027 11 N -0.269 5.269 12 C 0.038 3.962 13 C -0.139 4.139 14 C 0.314 3.686 15 O -0.351 6.351 16 O -0.345 6.345 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.189 4.189 22 C -0.255 4.255 23 C -0.201 4.201 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.013 0.987 27 H 0.156 0.844 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.260 0.740 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.107 -9.044 9.604 13.192 hybrid contribution 0.363 0.552 -0.214 0.695 sum 0.256 -8.491 9.390 12.662 Atomic orbital electron populations 1.69947 1.05716 1.26206 1.50761 1.24825 0.94677 0.98421 0.94845 0.86774 0.79715 0.83707 0.78453 1.21748 1.20180 1.20691 1.20152 0.92367 0.88264 1.49134 0.92633 1.18852 0.96702 0.93293 0.85827 1.21593 0.93997 0.95249 0.91841 1.60498 1.08115 1.54960 1.03362 1.20643 0.92434 0.89730 0.93440 1.21451 1.00133 0.89523 1.02770 1.23124 0.83417 0.87632 0.74379 1.90696 1.20534 1.75106 1.48749 1.84510 1.46772 1.29644 1.73606 1.21894 0.94959 1.02944 0.95928 1.21503 0.97723 0.94610 1.01753 1.21556 0.98217 0.97289 0.98476 1.21494 0.95718 0.99532 0.98871 1.22251 0.98282 0.96906 1.01416 1.23009 0.98095 0.95479 1.08949 1.22527 0.92449 1.01628 1.03497 0.93515 0.90809 0.98681 0.84375 0.87420 0.89047 0.74038 0.88354 0.93239 0.92602 0.90991 0.92565 0.92534 0.92437 0.91592 0.92160 0.91550 0.90661 0.92199 0.92233 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.08 55.43 0.73 -24.67 16 2 C 0.07 2.06 5.42 -17.82 -0.10 1.97 16 3 Si 0.88 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.46 -12.65 8.48 -34.44 -0.29 -12.94 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 9 C 0.05 1.30 1.46 -155.66 -0.23 1.07 16 10 C 0.10 2.19 4.75 -3.82 -0.02 2.17 16 11 N -0.64 -12.36 4.72 -99.96 -0.47 -12.83 16 12 C 0.13 2.02 0.28 -131.60 -0.04 1.99 16 13 C -0.10 -1.56 4.59 -27.88 -0.13 -1.69 16 14 C 0.47 8.41 7.80 36.00 0.28 8.69 16 15 O -0.47 -9.81 13.65 -18.75 -0.26 -10.06 16 16 O -0.53 -8.12 13.42 -39.28 -0.53 -8.64 16 17 C -0.12 -1.76 4.51 -26.73 -0.12 -1.89 16 18 C -0.12 -1.59 5.66 -26.73 -0.15 -1.75 16 19 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 20 C -0.12 -1.51 5.66 -26.73 -0.15 -1.66 16 21 C -0.15 -1.99 4.48 -26.73 -0.12 -2.11 16 22 C -0.22 -4.70 9.92 -26.73 -0.27 -4.97 16 23 C -0.16 -3.82 9.68 -26.73 -0.26 -4.07 16 24 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 25 H 0.07 1.79 6.41 -51.92 -0.33 1.45 16 26 H 0.00 -0.09 6.13 -51.93 -0.32 -0.41 16 27 H 0.34 6.45 5.10 -39.29 -0.20 6.25 16 28 H 0.11 1.79 6.11 -51.93 -0.32 1.48 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.40 4.67 9.10 45.56 0.41 5.08 16 31 H 0.10 1.71 5.28 -51.93 -0.27 1.44 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.10 6.67 -51.93 -0.35 0.75 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.95 6.40 -51.93 -0.33 0.61 16 41 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -30.61 337.92 -8.45 -39.06 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.25 Total: 11.55 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -1.74 Total: -16.73 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.25 Total: -37.50 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.78 Total: -18.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.61 -8.45 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.752 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds