Wall clock time and date at job start Tue Mar 31 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99895 * 2 1 4 4 H 1.48498 * 109.47274 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47346 * 119.99906 * 3 2 1 6 6 H 1.48504 * 109.46960 * 239.99501 * 3 2 1 7 7 C 1.37878 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99687 * 185.09008 * 7 2 1 9 9 C 1.50696 * 120.00124 * 5.09808 * 7 2 1 10 10 C 1.53003 * 115.55044 * 279.33785 * 9 7 2 11 11 N 1.46898 * 109.47253 * 305.99490 * 10 9 7 12 12 C 1.46905 * 111.00078 * 185.10592 * 11 10 9 13 13 C 1.52999 * 109.46902 * 304.27208 * 12 11 10 14 14 C 1.50697 * 109.46672 * 293.87545 * 13 12 11 15 15 O 1.20822 * 120.00403 * 7.41040 * 14 13 12 16 16 O 1.34237 * 119.99681 * 187.40315 * 14 13 12 17 17 C 1.52996 * 109.47155 * 184.26895 * 12 11 10 18 18 C 1.53002 * 109.47242 * 299.99665 * 17 12 11 19 19 C 1.53004 * 109.47247 * 300.00492 * 18 17 12 20 20 C 1.53005 * 109.47215 * 59.99604 * 19 18 17 21 21 C 1.52997 * 109.47062 * 300.00170 * 20 19 18 22 22 C 1.53002 * 117.50269 * 133.63620 * 9 7 2 23 23 C 1.53003 * 117.50256 * 65.00953 * 9 7 2 24 24 H 0.96993 * 120.00265 * 355.00378 * 1 2 3 25 25 H 1.09008 * 109.46653 * 65.98794 * 10 9 7 26 26 H 1.08995 * 109.47410 * 185.98265 * 10 9 7 27 27 H 1.00902 * 110.99628 * 309.05268 * 11 10 9 28 28 H 1.08999 * 109.47621 * 53.87397 * 13 12 11 29 29 H 1.09001 * 109.46884 * 173.88454 * 13 12 11 30 30 H 0.96701 * 116.99604 * 179.97438 * 16 14 13 31 31 H 1.08995 * 109.47386 * 59.99861 * 17 12 11 32 32 H 1.09002 * 109.47130 * 180.02562 * 17 12 11 33 33 H 1.08995 * 109.47476 * 180.02562 * 18 17 12 34 34 H 1.09002 * 109.46622 * 60.00223 * 18 17 12 35 35 H 1.08999 * 109.46587 * 299.99354 * 19 18 17 36 36 H 1.08999 * 109.46922 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.46683 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.46836 * 60.00163 * 20 19 18 39 39 H 1.09002 * 109.46898 * 299.99949 * 21 20 19 40 40 H 1.08995 * 109.47201 * 180.02562 * 21 20 19 41 41 H 1.09005 * 117.49550 * 359.97438 * 22 9 7 42 42 H 1.08997 * 117.50416 * 145.01832 * 22 9 7 43 43 H 1.08995 * 117.49793 * 214.98075 * 23 9 7 44 44 H 1.08998 * 117.49157 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1958 0.0835 9 6 1.2555 -2.4966 -0.1149 10 6 0.6291 -3.0147 1.1814 11 7 1.6594 -3.0944 2.2254 12 6 1.1219 -3.7020 3.4502 13 6 -0.1066 -2.9160 3.9126 14 6 0.3125 -1.5312 4.3340 15 8 1.4470 -1.1601 4.1468 16 8 -0.5747 -0.7098 4.9172 17 6 2.1894 -3.6709 4.5458 18 6 3.4179 -4.4570 4.0833 19 6 3.0190 -5.9069 3.8007 20 6 1.9515 -5.9378 2.7051 21 6 0.7230 -5.1518 3.1676 22 6 1.7894 -3.5333 -1.1055 23 6 0.5035 -2.7660 -1.4198 24 1 -0.4850 0.8368 0.0732 25 1 -0.1600 -2.3340 1.5009 26 1 0.2074 -4.0051 1.0106 27 1 2.4690 -3.5990 1.8967 28 1 -0.8224 -2.8455 3.0936 29 1 -0.5691 -3.4281 4.7565 30 1 -0.2592 0.1686 5.1703 31 1 2.4736 -2.6381 4.7471 32 1 1.7907 -4.1222 5.4544 33 1 4.1782 -4.4353 4.8640 34 1 3.8167 -4.0062 3.1746 35 1 2.6203 -6.3576 4.7095 36 1 3.8941 -6.4667 3.4708 37 1 1.6671 -6.9707 2.5041 38 1 2.3503 -5.4870 1.7964 39 1 0.3242 -5.6027 4.0763 40 1 -0.0376 -5.1743 2.3873 41 1 2.6822 -3.2729 -1.6741 42 1 1.6945 -4.5846 -0.8338 43 1 -0.4373 -3.3125 -1.3548 44 1 0.5509 -2.0012 -2.1949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:28 Heat of formation + Delta-G solvation = -90.521521 kcal Electronic energy + Delta-G solvation = -24357.270606 eV Core-core repulsion = 21081.103999 eV Total energy + Delta-G solvation = -3276.166606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60011 -39.97688 -38.23962 -36.80224 -34.84623 -33.86469 -31.97566 -31.38740 -28.67358 -27.48457 -25.77703 -23.66238 -23.22663 -22.84917 -21.41650 -20.84867 -19.36156 -18.71572 -18.09821 -17.29762 -16.91775 -16.61375 -16.45829 -15.80426 -15.48459 -15.37687 -15.16503 -14.52729 -14.20299 -13.94961 -13.66356 -13.46409 -13.21834 -12.99195 -12.87811 -12.84386 -12.80979 -12.51972 -12.38554 -12.33014 -12.11079 -12.01634 -11.81062 -11.44389 -11.39429 -11.06967 -10.89409 -10.72574 -10.59941 -10.31424 -9.84618 -8.68486 -7.98727 -6.02106 1.38546 1.40681 1.46827 1.56735 2.37643 2.48912 3.30432 3.41668 3.66817 3.72427 3.91271 4.03566 4.25230 4.36191 4.36638 4.44698 4.55154 4.58326 4.62118 4.70759 4.76415 4.79513 4.82054 4.86468 4.93138 4.94826 5.01345 5.14274 5.22453 5.24078 5.32590 5.33977 5.38322 5.49648 5.61737 5.63010 5.67940 5.79055 5.93870 5.97156 6.48400 6.72738 6.92175 6.97921 7.29065 7.61103 9.08947 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.007905 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.419489 B = 3541.203092 C = 4443.755614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.038 0.962 9 C 0.027 3.973 10 C 0.123 3.877 11 N -0.655 5.655 12 C 0.128 3.872 13 C -0.102 4.102 14 C 0.471 3.529 15 O -0.508 6.508 16 O -0.528 6.528 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.191 4.191 23 C -0.169 4.169 24 H 0.252 0.748 25 H 0.042 0.958 26 H 0.013 0.987 27 H 0.334 0.666 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.416 0.584 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -11.678 10.787 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.760 3.240 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.006 4.006 11 N -0.287 5.287 12 C 0.036 3.964 13 C -0.140 4.140 14 C 0.313 3.687 15 O -0.395 6.395 16 O -0.342 6.342 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.181 4.181 22 C -0.228 4.228 23 C -0.208 4.208 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.155 0.845 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.276 0.724 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.273 -11.173 10.764 15.517 hybrid contribution 0.436 1.246 -0.536 1.425 sum 0.163 -9.927 10.228 14.254 Atomic orbital electron populations 1.70034 1.06397 1.26323 1.51947 1.25360 0.95387 1.00743 0.95258 0.86037 0.78722 0.81249 0.78015 1.21294 1.21111 1.20106 1.20346 0.91804 0.90117 1.48214 0.94328 1.18982 0.97738 0.93240 0.87422 1.21192 0.93426 0.95009 0.90989 1.60378 1.07807 1.56542 1.03968 1.20772 0.92649 0.91061 0.91890 1.21589 1.00023 0.88712 1.03690 1.23647 0.82979 0.88525 0.73533 1.90695 1.22208 1.76050 1.50537 1.84480 1.46175 1.30530 1.73029 1.21812 0.95306 1.01610 0.96577 1.21476 0.97432 0.95704 1.00863 1.21505 0.98432 0.95848 0.98950 1.21498 0.95556 1.00198 0.98288 1.22175 0.98411 0.95142 1.02375 1.22977 0.96779 0.96398 1.06623 1.22445 0.94009 1.01826 1.02491 0.93889 0.93974 0.96944 0.84487 0.88673 0.85222 0.72400 0.91409 0.90747 0.91544 0.93559 0.90684 0.91496 0.90545 0.93687 0.89489 0.92413 0.91009 0.89247 0.90892 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 13.08 21.45 0.28 -52.63 16 2 C 0.03 1.78 5.42 84.65 0.46 2.24 16 3 Si 0.93 46.61 29.54 68.60 2.03 48.64 16 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.47 -26.08 8.48 25.60 0.22 -25.86 16 8 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 9 C 0.03 1.30 1.46 -52.93 -0.08 1.22 16 10 C 0.12 5.26 4.75 86.30 0.41 5.67 16 11 N -0.65 -25.30 4.72 -470.16 -2.22 -27.51 16 12 C 0.13 3.79 0.28 3.53 0.00 3.79 16 13 C -0.10 -3.04 4.59 29.85 0.14 -2.90 16 14 C 0.47 16.61 7.80 71.24 0.56 17.17 16 15 O -0.51 -21.78 13.65 21.98 0.30 -21.48 16 16 O -0.53 -15.77 13.42 -51.48 -0.69 -16.46 16 17 C -0.12 -3.22 4.51 30.59 0.14 -3.08 16 18 C -0.12 -2.96 5.66 30.60 0.17 -2.79 16 19 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 20 C -0.12 -2.62 5.66 30.59 0.17 -2.45 16 21 C -0.14 -3.35 4.48 30.59 0.14 -3.21 16 22 C -0.19 -8.00 9.92 30.60 0.30 -7.70 16 23 C -0.17 -7.92 9.68 30.60 0.30 -7.62 16 24 H 0.25 14.35 8.32 -92.71 -0.77 13.58 16 25 H 0.04 2.07 6.41 -2.38 -0.02 2.05 16 26 H 0.01 0.49 6.13 -2.39 -0.01 0.48 16 27 H 0.33 12.86 5.10 -89.69 -0.46 12.40 16 28 H 0.10 3.12 6.11 -2.39 -0.01 3.10 16 29 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.42 9.52 9.10 -74.06 -0.67 8.85 16 31 H 0.07 2.36 5.28 -2.39 -0.01 2.35 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.40 6.67 -2.39 -0.02 1.38 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.20 6.66 -2.39 -0.02 1.18 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.48 6.40 -2.39 -0.02 1.46 16 41 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 42 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.05 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -66.99 337.92 2.68 -64.31 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.12 Total: 32.69 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.11 Total: -27.55 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.94 Total: -80.15 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.39 Total: -37.94 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -66.99 2.68 -64.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.214 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds