Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48494 * 109.47310 * 264.52887 * 3 2 1 5 5 H 1.48505 * 109.46767 * 24.52935 * 3 2 1 6 6 H 1.48500 * 109.47169 * 144.52383 * 3 2 1 7 7 C 1.37876 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00259 * 359.32733 * 7 2 1 9 9 C 1.50708 * 119.99816 * 179.32778 * 7 2 1 10 10 C 1.52998 * 115.54847 * 294.94390 * 9 7 2 11 11 N 1.46896 * 109.47527 * 299.87080 * 10 9 7 12 12 C 1.46900 * 111.00359 * 171.01269 * 11 10 9 13 13 H 1.08998 * 108.78602 * 175.57357 * 12 11 10 14 14 C 1.54065 * 108.81429 * 293.98190 * 12 11 10 15 15 C 1.50477 * 112.49655 * 162.57592 * 14 12 11 16 16 C 1.54238 * 108.51619 * 265.84794 * 15 14 12 17 17 C 1.45542 * 112.40866 * 79.98837 * 16 15 14 18 18 C 1.54241 * 112.40714 * 298.06268 * 17 16 15 19 19 C 1.50233 * 108.50383 * 79.94337 * 18 17 16 20 20 H 1.09003 * 108.86054 * 26.68864 * 19 18 17 21 21 C 1.50703 * 108.75908 * 145.05317 * 19 18 17 22 22 O 1.20829 * 120.00034 * 129.08829 * 21 19 18 23 23 O 1.34233 * 119.99877 * 309.09842 * 21 19 18 24 24 C 1.53000 * 117.49939 * 149.27899 * 9 7 2 25 25 C 1.52994 * 117.49962 * 80.61518 * 9 7 2 26 26 H 0.97005 * 120.00182 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47091 * 59.86935 * 10 9 7 28 28 H 1.08998 * 109.47003 * 179.86550 * 10 9 7 29 29 H 1.00905 * 111.00137 * 47.06181 * 11 10 9 30 30 H 1.08996 * 108.87292 * 283.35481 * 14 12 11 31 31 H 1.08994 * 108.87282 * 41.79909 * 14 12 11 32 32 H 1.08997 * 109.62577 * 25.56033 * 15 14 12 33 33 H 1.08994 * 109.62381 * 145.94243 * 15 14 12 34 34 H 1.09004 * 108.88950 * 200.73907 * 16 15 14 35 35 H 1.09000 * 108.89345 * 319.32828 * 16 15 14 36 36 H 1.09006 * 108.89315 * 58.81386 * 17 16 15 37 37 H 1.08997 * 108.89712 * 177.30714 * 17 16 15 38 38 H 1.08999 * 109.62828 * 199.69176 * 18 17 16 39 39 H 1.09000 * 109.62657 * 320.27687 * 18 17 16 40 40 H 0.96697 * 116.99559 * 179.97438 * 23 21 19 41 41 H 1.08996 * 117.49946 * 359.97438 * 24 9 7 42 42 H 1.08990 * 117.49746 * 145.02066 * 24 9 7 43 43 H 1.08996 * 117.50025 * 214.98085 * 25 9 7 44 44 H 1.09007 * 117.49745 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6123 1.9796 -1.3936 5 1 1.3935 2.6832 0.5813 6 1 3.4841 1.4762 0.8126 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0119 9 6 3.5114 -1.1942 -0.0148 10 6 4.1585 -0.6200 -1.2767 11 7 3.7355 -1.4045 -2.4444 12 6 4.1616 -0.7602 -3.6939 13 1 3.9000 -1.4087 -4.5301 14 6 3.4087 0.5752 -3.8463 15 6 4.0598 1.4925 -4.8457 16 6 5.0106 2.4438 -4.0906 17 6 6.2835 1.8158 -3.7690 18 6 6.1194 0.5979 -2.8369 19 6 5.6915 -0.5811 -3.6639 20 1 6.0508 -0.4450 -4.6840 21 6 6.3172 -1.8271 -3.0917 22 8 5.6306 -2.7914 -2.8495 23 8 7.6372 -1.8654 -2.8509 24 6 4.2249 -2.3565 0.6787 25 6 4.2315 -0.9645 1.3155 26 1 -0.4851 0.8401 -0.0004 27 1 3.8485 0.4173 -1.4042 28 1 5.2434 -0.6658 -1.1817 29 1 2.7377 -1.5546 -2.4370 30 1 2.3880 0.3697 -4.1689 31 1 3.3767 1.0744 -2.8779 32 1 4.6270 0.9044 -5.5672 33 1 3.2952 2.0703 -5.3647 34 1 5.1964 3.3216 -4.7096 35 1 4.5308 2.7605 -3.1646 36 1 6.7605 1.4908 -4.6938 37 1 6.9258 2.5493 -3.2816 38 1 7.0696 0.3789 -2.3498 39 1 5.3599 0.8120 -2.0850 40 1 7.9926 -2.6861 -2.4833 41 1 3.6044 -3.1209 1.1463 42 1 5.1555 -2.7117 0.2361 43 1 5.1663 -0.4046 1.2916 44 1 3.6152 -0.8128 2.2017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -53.104116 kcal Electronic energy + Delta-G solvation = -24740.505518 eV Core-core repulsion = 21465.961452 eV Total energy + Delta-G solvation = -3274.544066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.70805 -38.60774 -36.89160 -35.71853 -34.16459 -32.34219 -32.10323 -30.13142 -26.49208 -25.44209 -25.26865 -22.53691 -21.92090 -21.34882 -20.64641 -18.89269 -18.70773 -17.60761 -16.66635 -16.43818 -15.50524 -15.32812 -15.06272 -14.47193 -14.37913 -13.95242 -13.45899 -13.41292 -13.18876 -12.87266 -12.80730 -12.44449 -12.22916 -11.98887 -11.58467 -11.39144 -11.16442 -11.04819 -10.87356 -10.73414 -10.53629 -10.40928 -10.29446 -10.24050 -10.12079 -9.94839 -9.68796 -9.32996 -8.91886 -8.61910 -8.38799 -7.37658 -6.11910 -4.12138 2.72993 3.16971 3.32544 3.33490 3.39905 4.38017 4.64125 4.69664 4.76639 4.90181 5.11524 5.16773 5.20297 5.30768 5.35423 5.40608 5.48462 5.68688 5.72798 5.83106 5.94390 6.00675 6.04172 6.07538 6.14193 6.18469 6.23914 6.26810 6.34676 6.39608 6.41272 6.50342 6.54373 6.65434 6.71382 6.87823 6.89182 7.13588 7.26312 7.78253 7.90293 8.25017 8.41507 8.55392 8.94455 9.51352 10.99709 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.009022 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.041177 B = 3102.847072 C = 4019.231933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.077 3.923 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.479 4.479 8 H 0.077 0.923 9 C 0.001 3.999 10 C 0.086 3.914 11 N -0.651 5.651 12 C 0.102 3.898 13 H 0.080 0.920 14 C -0.167 4.167 15 C -0.112 4.112 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.139 4.139 19 C -0.061 4.061 20 H 0.100 0.900 21 C 0.464 3.536 22 O -0.456 6.456 23 O -0.533 6.533 24 C -0.168 4.168 25 C -0.201 4.201 26 H 0.264 0.736 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.359 0.641 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.401 0.599 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.474 3.289 -9.299 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.125 4.125 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.516 4.516 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.043 4.043 11 N -0.283 5.283 12 C -0.009 4.009 13 H 0.098 0.902 14 C -0.207 4.207 15 C -0.150 4.150 16 C -0.161 4.161 17 C -0.150 4.150 18 C -0.176 4.176 19 C -0.080 4.080 20 H 0.118 0.882 21 C 0.303 3.697 22 O -0.338 6.338 23 O -0.346 6.346 24 C -0.205 4.205 25 C -0.240 4.240 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.181 0.819 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.259 0.741 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.441 3.028 -9.352 16.652 hybrid contribution -0.020 1.230 0.286 1.263 sum 13.421 4.258 -9.066 16.746 Atomic orbital electron populations 1.69895 1.06248 1.26947 1.50369 1.24937 0.94484 0.98779 0.94271 0.87140 0.80887 0.83724 0.78640 1.19820 1.22412 1.17929 1.20368 0.86662 0.94305 1.50295 0.90482 1.19398 0.94494 0.98098 0.88009 1.21971 0.96894 0.94215 0.91203 1.60840 1.22228 1.46255 0.98950 1.21848 0.90434 0.93405 0.95236 0.90174 1.22353 0.99922 0.97191 1.01185 1.21277 0.98432 0.97439 0.97828 1.20553 0.96447 0.98472 1.00646 1.20456 0.97675 0.97480 0.99354 1.21932 1.03193 0.93455 0.98988 1.20851 0.95902 0.90730 1.00541 0.88192 1.23318 0.79420 0.90432 0.76556 1.90813 1.61497 1.36290 1.45239 1.84512 1.26537 1.45330 1.78212 1.22617 1.01211 0.91337 1.05311 1.23054 1.01252 0.99785 0.99882 0.92660 0.95366 0.93485 0.81933 0.91518 0.90290 0.91848 0.92107 0.92430 0.92135 0.92165 0.92126 0.90464 0.89052 0.74103 0.90215 0.91123 0.91813 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.86 24.86 -169.99 -4.23 16.64 16 4 H -0.27 -6.11 5.18 56.52 0.29 -5.82 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -5.97 6.11 56.52 0.35 -5.62 16 7 C -0.48 -13.05 8.46 -34.44 -0.29 -13.34 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.00 0.03 1.05 -155.66 -0.16 -0.14 16 10 C 0.09 1.77 3.13 -3.83 -0.01 1.76 16 11 N -0.65 -12.81 4.26 -105.55 -0.45 -13.26 16 12 C 0.10 1.63 2.61 -66.60 -0.17 1.45 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.17 -2.62 4.80 -27.44 -0.13 -2.75 16 15 C -0.11 -1.39 5.61 -27.34 -0.15 -1.54 16 16 C -0.12 -1.49 5.26 -29.60 -0.16 -1.65 16 17 C -0.11 -1.28 5.26 -29.60 -0.16 -1.43 16 18 C -0.14 -1.90 3.93 -27.46 -0.11 -2.01 16 19 C -0.06 -0.85 1.83 -92.59 -0.17 -1.02 16 20 H 0.10 1.17 6.63 -51.93 -0.34 0.82 16 21 C 0.46 7.11 6.23 36.01 0.22 7.33 16 22 O -0.46 -8.56 15.10 -18.75 -0.28 -8.84 16 23 O -0.53 -6.58 12.52 -39.27 -0.49 -7.07 16 24 C -0.17 -3.65 9.95 -26.69 -0.27 -3.92 16 25 C -0.20 -4.42 8.47 -26.69 -0.23 -4.65 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.61 1.48 -51.93 -0.08 0.53 16 28 H 0.05 0.93 5.05 -51.93 -0.26 0.67 16 29 H 0.36 7.84 7.76 -39.29 -0.30 7.54 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.46 2.89 -51.93 -0.15 1.31 16 32 H 0.06 0.69 6.98 -51.93 -0.36 0.33 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 36 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.03 7.03 -51.93 -0.37 0.66 16 39 H 0.09 1.49 3.64 -51.93 -0.19 1.30 16 40 H 0.40 3.46 9.10 45.56 0.41 3.88 16 41 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -30.59 316.28 -7.73 -38.33 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -5.94 Total: 15.15 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.88 Total: -19.85 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.32 Total: -39.11 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.77 Total: -15.91 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.23 Total: 16.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.59 -7.73 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.778 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds