Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47576 * 2 1 4 4 C 1.52998 * 109.47243 * 239.99561 * 2 1 3 5 5 O 1.42904 * 109.46930 * 120.00052 * 2 1 3 6 6 C 1.42900 * 114.00236 * 65.19777 * 5 2 1 7 7 C 1.52996 * 109.47135 * 185.11792 * 6 5 2 8 8 N 1.46898 * 109.47570 * 64.55288 * 7 6 5 9 9 C 1.46901 * 110.99868 * 72.04622 * 8 7 6 10 10 C 1.50697 * 109.47265 * 189.99946 * 9 8 7 11 11 H 1.07997 * 120.00017 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00321 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99720 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00338 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46898 * 90.00199 * 14 12 10 16 16 H 1.48493 * 109.47432 * 210.00301 * 14 12 10 17 17 H 1.48505 * 109.47057 * 330.00486 * 14 12 10 18 18 C 1.46901 * 111.00125 * 195.99897 * 8 7 6 19 19 C 1.50707 * 109.46664 * 76.15850 * 18 8 7 20 20 C 1.34512 * 125.78768 * 84.59678 * 19 18 8 21 21 C 1.41386 * 106.83825 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.83833 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.42480 * 359.73903 * 22 21 20 24 24 H 1.09000 * 109.47371 * 303.03928 * 1 2 3 25 25 H 1.09000 * 109.47319 * 63.03924 * 1 2 3 26 26 H 1.08999 * 109.47456 * 183.03970 * 1 2 3 27 27 H 1.09001 * 109.47530 * 184.82132 * 3 2 1 28 28 H 1.09005 * 109.46760 * 304.82185 * 3 2 1 29 29 H 1.08998 * 109.47309 * 64.81599 * 3 2 1 30 30 H 1.08998 * 109.47491 * 300.00393 * 4 2 1 31 31 H 1.09011 * 109.46952 * 60.00354 * 4 2 1 32 32 H 1.09000 * 109.47277 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47099 * 65.11225 * 6 5 2 34 34 H 1.09000 * 109.46979 * 305.11344 * 6 5 2 35 35 H 1.09003 * 109.46880 * 304.54995 * 7 6 5 36 36 H 1.09006 * 109.46942 * 184.55988 * 7 6 5 37 37 H 1.09005 * 109.47053 * 310.00677 * 9 8 7 38 38 H 1.09001 * 109.46880 * 70.00134 * 9 8 7 39 39 H 0.97001 * 120.00286 * 179.97438 * 13 12 10 40 40 H 1.08993 * 109.47105 * 316.16085 * 18 8 7 41 41 H 1.08997 * 109.46968 * 196.15546 * 18 8 7 42 42 H 1.07995 * 126.58054 * 0.03854 * 20 19 18 43 43 H 1.08004 * 126.58082 * 179.97438 * 21 20 19 44 44 H 1.07999 * 125.78560 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.6837 -2.0652 1.2070 7 6 2.1270 -2.6530 2.5481 8 7 1.3545 -2.0341 3.6335 9 6 -0.0349 -2.5113 3.6291 10 6 -0.8534 -1.6836 4.5861 11 1 -0.3882 -0.8828 5.1417 12 6 -2.1964 -1.9478 4.7517 13 7 -2.7630 -2.9227 4.0748 14 14 -3.2111 -0.9213 5.9374 15 1 -3.7835 0.2448 5.2177 16 1 -4.3118 -1.7494 6.4923 17 1 -2.3448 -0.4431 7.0447 18 6 1.9898 -2.2752 4.9358 19 6 3.1862 -1.3711 5.0861 20 6 3.1608 -0.0984 5.5205 21 6 4.4959 0.3666 5.5046 22 6 5.2573 -0.6501 5.0618 23 8 4.4595 -1.7020 4.8157 24 1 -0.3634 0.5603 0.8615 25 1 -0.3634 0.4659 -0.9160 26 1 -0.3634 -1.0262 0.0545 27 1 3.1266 1.4436 -0.0864 28 1 1.6079 1.9806 -0.8437 29 1 1.7489 1.9308 0.9299 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1393 32 1 3.1300 -0.7217 -1.2489 33 1 2.1983 -2.5810 0.3962 34 1 0.6071 -2.1921 1.0929 35 1 3.1883 -2.4547 2.6987 36 1 1.9551 -3.7294 2.5477 37 1 -0.4475 -2.4194 2.6244 38 1 -0.0610 -3.5562 3.9384 39 1 -3.7078 -3.1090 4.1915 40 1 2.3104 -3.3152 4.9967 41 1 1.2755 -2.0679 5.7325 42 1 2.2881 0.4606 5.8243 43 1 4.8386 1.3495 5.7926 44 1 6.3291 -0.6261 4.9312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -32.363177 kcal Electronic energy + Delta-G solvation = -23277.466933 eV Core-core repulsion = 20003.822262 eV Total energy + Delta-G solvation = -3273.644671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02579 -38.68859 -36.67803 -33.17918 -32.60073 -32.38658 -30.32412 -28.73709 -27.28500 -27.08808 -26.48949 -24.30874 -22.48533 -21.23511 -20.45704 -19.76811 -19.27906 -16.90869 -16.55652 -16.10701 -15.66198 -15.13901 -14.91106 -14.56840 -14.27800 -14.01624 -13.55933 -13.11368 -13.09722 -12.82136 -12.35960 -12.22213 -12.15647 -11.96191 -11.78959 -11.63108 -11.52373 -11.43965 -11.25947 -11.13401 -10.92810 -10.77823 -10.62258 -10.51850 -10.02438 -9.80645 -9.40755 -9.22410 -8.92473 -8.44981 -7.93959 -7.24430 -6.04648 -4.05457 2.23069 3.14625 3.31679 3.37976 3.41450 3.50089 4.14069 4.42100 4.95543 5.09049 5.11599 5.22059 5.30301 5.31520 5.48832 5.53561 5.65408 5.69405 5.75079 5.80600 5.86772 5.91231 5.92114 6.02681 6.10014 6.14373 6.23271 6.27756 6.30800 6.37109 6.41338 6.50268 6.53906 6.64795 6.70097 7.02484 7.19553 7.28093 7.67383 7.77739 7.86687 8.05080 8.16770 8.52096 9.02206 9.58865 11.06091 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.007352 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.951552 B = 3807.514744 C = 5564.805552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 C -0.133 4.133 4 C -0.177 4.177 5 O -0.354 6.354 6 C 0.068 3.932 7 C 0.055 3.945 8 N -0.519 5.519 9 C 0.193 3.807 10 C -0.506 4.506 11 H 0.064 0.936 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.137 3.863 19 C 0.018 3.982 20 C -0.199 4.199 21 C -0.211 4.211 22 C -0.063 4.063 23 O -0.184 6.184 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.036 0.964 38 H -0.009 1.009 39 H 0.261 0.739 40 H 0.035 0.965 41 H 0.117 0.883 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.823 4.013 -5.507 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.066 3.934 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.273 6.273 6 C -0.009 4.009 7 C -0.073 4.073 8 N -0.244 5.244 9 C 0.069 3.931 10 C -0.545 4.545 11 H 0.083 0.917 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.198 1.198 18 C 0.009 3.991 19 C -0.033 4.033 20 C -0.219 4.219 21 C -0.231 4.231 22 C -0.130 4.130 23 O -0.080 6.080 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.134 0.866 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.814 4.226 -5.579 13.732 hybrid contribution -0.787 -0.211 0.481 0.946 sum 11.028 4.015 -5.098 12.795 Atomic orbital electron populations 1.22357 0.95601 1.02997 1.02152 1.21393 0.93373 0.92978 0.85664 1.21701 1.01037 0.94004 1.02325 1.22460 1.01586 1.01132 0.98289 1.88086 1.77527 1.21090 1.40577 1.22526 0.99891 0.82419 0.96059 1.22089 0.98401 0.95224 0.91623 1.61978 1.03846 1.58643 0.99950 1.19795 0.81531 0.93656 0.98151 1.21149 0.93473 1.16295 1.23564 0.91739 1.24959 0.97829 0.95351 0.96272 1.69951 1.11906 1.30153 1.41771 0.86539 0.79844 0.80087 0.81211 1.20674 1.21374 1.19779 1.20522 0.89348 0.93641 0.95539 1.22775 0.82802 0.96652 1.01033 1.21501 0.97546 0.95213 1.07644 1.21760 0.93824 1.00307 1.07184 1.23759 0.96345 0.86289 1.06647 1.83989 1.17607 1.38576 1.67851 0.91161 0.92640 0.92068 0.92500 0.91857 0.91573 0.92300 0.92087 0.92235 0.94276 0.92311 0.91386 0.94301 0.94633 0.99107 0.92945 0.94648 0.86559 0.83702 0.84262 0.79070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 8.48 37.16 0.31 -2.41 16 2 C 0.11 1.60 1.14 -90.63 -0.10 1.50 16 3 C -0.13 -1.78 8.84 37.15 0.33 -1.45 16 4 C -0.18 -2.23 8.08 37.16 0.30 -1.93 16 5 O -0.35 -6.58 9.93 -35.23 -0.35 -6.93 16 6 C 0.07 1.21 5.20 37.16 0.19 1.40 16 7 C 0.06 1.05 5.17 -3.83 -0.02 1.03 16 8 N -0.52 -11.23 4.31 -237.51 -1.02 -12.26 16 9 C 0.19 4.86 4.57 -4.98 -0.02 4.83 16 10 C -0.51 -13.77 8.23 -34.44 -0.28 -14.05 16 11 H 0.06 1.75 7.32 -52.49 -0.38 1.37 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.01 13.29 55.43 0.74 -25.28 16 14 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.14 2.74 5.34 -4.97 -0.03 2.72 16 19 C 0.02 0.34 6.16 -35.62 -0.22 0.12 16 20 C -0.20 -3.59 10.81 -39.70 -0.43 -4.02 16 21 C -0.21 -3.23 10.91 -39.70 -0.43 -3.66 16 22 C -0.06 -0.91 12.09 29.42 0.36 -0.55 16 23 O -0.18 -3.21 10.26 5.71 0.06 -3.15 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.03 6.41 -51.93 -0.33 0.69 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.74 6.60 -51.93 -0.34 0.40 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.60 6.64 -51.93 -0.34 0.26 16 34 H 0.06 1.14 4.59 -51.93 -0.24 0.90 16 35 H 0.07 1.27 7.04 -51.93 -0.37 0.91 16 36 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.04 0.95 6.34 -51.93 -0.33 0.63 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.67 7.99 -51.93 -0.42 0.25 16 41 H 0.12 2.45 6.58 -51.93 -0.34 2.11 16 42 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 43 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 44 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -30.16 354.29 -7.70 -37.86 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.30 Total: 3.08 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -0.14 Total: -15.00 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.29 Total: -37.53 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.29 Total: -10.08 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.16 -7.70 -37.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.496 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds