Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47576 * 2 1 4 4 C 1.52998 * 109.47243 * 239.99561 * 2 1 3 5 5 O 1.42904 * 109.46930 * 120.00052 * 2 1 3 6 6 C 1.42900 * 114.00236 * 65.19777 * 5 2 1 7 7 C 1.52996 * 109.47135 * 185.11792 * 6 5 2 8 8 N 1.46898 * 109.47570 * 64.55288 * 7 6 5 9 9 C 1.46901 * 110.99868 * 72.04622 * 8 7 6 10 10 C 1.50697 * 109.47265 * 189.99946 * 9 8 7 11 11 H 1.07997 * 120.00017 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00321 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99720 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00338 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46898 * 90.00199 * 14 12 10 16 16 H 1.48493 * 109.47432 * 210.00301 * 14 12 10 17 17 H 1.48505 * 109.47057 * 330.00486 * 14 12 10 18 18 C 1.46901 * 111.00125 * 195.99897 * 8 7 6 19 19 C 1.50707 * 109.46664 * 76.15850 * 18 8 7 20 20 C 1.34512 * 125.78768 * 84.59678 * 19 18 8 21 21 C 1.41386 * 106.83825 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.83833 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.42480 * 359.73903 * 22 21 20 24 24 H 1.09000 * 109.47371 * 303.03928 * 1 2 3 25 25 H 1.09000 * 109.47319 * 63.03924 * 1 2 3 26 26 H 1.08999 * 109.47456 * 183.03970 * 1 2 3 27 27 H 1.09001 * 109.47530 * 184.82132 * 3 2 1 28 28 H 1.09005 * 109.46760 * 304.82185 * 3 2 1 29 29 H 1.08998 * 109.47309 * 64.81599 * 3 2 1 30 30 H 1.08998 * 109.47491 * 300.00393 * 4 2 1 31 31 H 1.09011 * 109.46952 * 60.00354 * 4 2 1 32 32 H 1.09000 * 109.47277 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47099 * 65.11225 * 6 5 2 34 34 H 1.09000 * 109.46979 * 305.11344 * 6 5 2 35 35 H 1.09003 * 109.46880 * 304.54995 * 7 6 5 36 36 H 1.09006 * 109.46942 * 184.55988 * 7 6 5 37 37 H 1.09005 * 109.47053 * 310.00677 * 9 8 7 38 38 H 1.09001 * 109.46880 * 70.00134 * 9 8 7 39 39 H 0.97001 * 120.00286 * 179.97438 * 13 12 10 40 40 H 1.08993 * 109.47105 * 316.16085 * 18 8 7 41 41 H 1.08997 * 109.46968 * 196.15546 * 18 8 7 42 42 H 1.07995 * 126.58054 * 0.03854 * 20 19 18 43 43 H 1.08004 * 126.58082 * 179.97438 * 21 20 19 44 44 H 1.07999 * 125.78560 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.6837 -2.0652 1.2070 7 6 2.1270 -2.6530 2.5481 8 7 1.3545 -2.0341 3.6335 9 6 -0.0349 -2.5113 3.6291 10 6 -0.8534 -1.6836 4.5861 11 1 -0.3882 -0.8828 5.1417 12 6 -2.1964 -1.9478 4.7517 13 7 -2.7630 -2.9227 4.0748 14 14 -3.2111 -0.9213 5.9374 15 1 -3.7835 0.2448 5.2177 16 1 -4.3118 -1.7494 6.4923 17 1 -2.3448 -0.4431 7.0447 18 6 1.9898 -2.2752 4.9358 19 6 3.1862 -1.3711 5.0861 20 6 3.1608 -0.0984 5.5205 21 6 4.4959 0.3666 5.5046 22 6 5.2573 -0.6501 5.0618 23 8 4.4595 -1.7020 4.8157 24 1 -0.3634 0.5603 0.8615 25 1 -0.3634 0.4659 -0.9160 26 1 -0.3634 -1.0262 0.0545 27 1 3.1266 1.4436 -0.0864 28 1 1.6079 1.9806 -0.8437 29 1 1.7489 1.9308 0.9299 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1393 32 1 3.1300 -0.7217 -1.2489 33 1 2.1983 -2.5810 0.3962 34 1 0.6071 -2.1921 1.0929 35 1 3.1883 -2.4547 2.6987 36 1 1.9551 -3.7294 2.5477 37 1 -0.4475 -2.4194 2.6244 38 1 -0.0610 -3.5562 3.9384 39 1 -3.7078 -3.1090 4.1915 40 1 2.3104 -3.3152 4.9967 41 1 1.2755 -2.0679 5.7325 42 1 2.2881 0.4606 5.8243 43 1 4.8386 1.3495 5.7926 44 1 6.3291 -0.6261 4.9312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081517976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -50.793953 kcal Electronic energy + Delta-G solvation = -23278.266152 eV Core-core repulsion = 20003.822262 eV Total energy + Delta-G solvation = -3274.443890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.33428 -40.02812 -38.32747 -34.83556 -34.29209 -33.74831 -31.74936 -30.43211 -28.63781 -28.25877 -27.97475 -25.98602 -24.24669 -22.57168 -21.94626 -21.13218 -20.65503 -18.61087 -18.17751 -17.43956 -17.18617 -16.69507 -16.48102 -16.13132 -15.70578 -15.41864 -15.06861 -14.60282 -14.53396 -14.19882 -13.86544 -13.62510 -13.60721 -13.46032 -13.02828 -12.99059 -12.84979 -12.83498 -12.70143 -12.62289 -12.56139 -12.44890 -12.27611 -12.05999 -11.77787 -11.30423 -11.19217 -10.70818 -10.60157 -10.26874 -9.27742 -8.99895 -8.19251 -6.27464 0.92873 1.40815 1.41512 1.52412 1.84200 2.20829 2.40752 2.85837 3.13731 3.35742 3.89094 3.93821 3.99099 4.14205 4.18187 4.24070 4.28756 4.34836 4.43970 4.53658 4.61530 4.66035 4.70529 4.74576 4.81959 4.89078 4.94840 4.97499 5.01082 5.03833 5.15920 5.17707 5.19502 5.24473 5.34403 5.41829 5.43546 5.66317 5.74670 6.05566 6.27873 6.35989 6.50757 6.65166 6.87129 7.41368 8.91609 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.007352 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.951552 B = 3807.514744 C = 5564.805552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 C -0.129 4.129 4 C -0.170 4.170 5 O -0.379 6.379 6 C 0.075 3.925 7 C 0.055 3.945 8 N -0.526 5.526 9 C 0.212 3.788 10 C -0.518 4.518 11 H 0.060 0.940 12 C 0.008 3.992 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.265 1.265 18 C 0.142 3.858 19 C -0.007 4.007 20 C -0.211 4.211 21 C -0.222 4.222 22 C -0.044 4.044 23 O -0.194 6.194 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.013 0.987 38 H -0.034 1.034 39 H 0.264 0.736 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.168 0.832 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.706 5.350 -6.108 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.227 4.227 5 O -0.299 6.299 6 C -0.002 4.002 7 C -0.073 4.073 8 N -0.251 5.251 9 C 0.087 3.913 10 C -0.557 4.557 11 H 0.078 0.922 12 C -0.190 4.190 13 N -0.571 5.571 14 Si 0.785 3.215 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.189 1.189 18 C 0.014 3.986 19 C -0.057 4.057 20 C -0.231 4.231 21 C -0.241 4.241 22 C -0.111 4.111 23 O -0.090 6.090 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.031 0.969 38 H -0.016 1.016 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.153 0.847 43 H 0.186 0.814 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 13.715 5.568 -6.179 16.040 hybrid contribution -1.279 -0.591 0.645 1.549 sum 12.437 4.977 -5.534 14.494 Atomic orbital electron populations 1.22333 0.96588 1.01541 1.02267 1.21709 0.92747 0.94140 0.85858 1.21709 1.01723 0.92739 1.02461 1.22383 1.02016 1.00764 0.97552 1.88040 1.77780 1.21298 1.42784 1.22426 0.98714 0.82873 0.96202 1.22157 0.98235 0.95517 0.91369 1.61914 1.02629 1.58958 1.01609 1.19397 0.83707 0.91982 0.96223 1.21402 0.94116 1.16310 1.23850 0.92206 1.25775 0.98950 0.96425 0.97881 1.70065 1.12309 1.31602 1.43172 0.85515 0.78263 0.78491 0.79188 1.20231 1.20693 1.18916 1.20321 0.89764 0.94492 0.94024 1.22351 0.83157 0.96734 1.03473 1.21683 0.98934 0.95129 1.07324 1.22073 0.92335 1.02008 1.07692 1.24737 0.97925 0.84767 1.03693 1.83974 1.17133 1.39822 1.68111 0.94105 0.89699 0.93951 0.91611 0.89113 0.93593 0.92711 0.89734 0.91431 0.91376 0.94663 0.90683 0.93778 0.96879 1.01588 0.92748 0.94045 0.88528 0.84709 0.81423 0.74271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 8.48 71.98 0.61 -4.77 16 2 C 0.09 2.78 1.14 -10.80 -0.01 2.76 16 3 C -0.13 -3.24 8.84 71.98 0.64 -2.60 16 4 C -0.17 -3.87 8.08 71.98 0.58 -3.29 16 5 O -0.38 -14.12 9.93 -148.98 -1.48 -15.59 16 6 C 0.07 2.69 5.20 71.98 0.37 3.07 16 7 C 0.06 2.13 5.17 86.30 0.45 2.58 16 8 N -0.53 -23.68 4.31 -905.36 -3.90 -27.58 16 9 C 0.21 11.26 4.57 85.56 0.39 11.65 16 10 C -0.52 -29.31 8.23 25.60 0.21 -29.09 16 11 H 0.06 3.37 7.32 -2.91 -0.02 3.35 16 12 C 0.01 0.45 5.46 84.65 0.46 0.91 16 13 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 14 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.14 5.87 5.34 85.56 0.46 6.33 16 19 C -0.01 -0.26 6.16 24.83 0.15 -0.11 16 20 C -0.21 -7.56 10.81 22.19 0.24 -7.32 16 21 C -0.22 -6.26 10.91 22.19 0.24 -6.02 16 22 C -0.04 -1.14 12.09 66.97 0.81 -0.33 16 23 O -0.19 -6.45 10.26 -2.48 -0.03 -6.48 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.47 6.41 -2.39 -0.02 1.46 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.28 6.60 -2.39 -0.02 1.27 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.03 6.64 -2.39 -0.02 2.02 16 34 H 0.04 1.43 4.59 -2.39 -0.01 1.42 16 35 H 0.07 2.78 7.04 -2.39 -0.02 2.77 16 36 H 0.04 1.64 8.05 -2.38 -0.02 1.62 16 37 H 0.01 0.75 6.34 -2.38 -0.02 0.74 16 38 H -0.03 -1.90 8.12 -2.39 -0.02 -1.92 16 39 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.04 1.62 7.99 -2.39 -0.02 1.60 16 41 H 0.10 4.31 6.58 -2.39 -0.02 4.29 16 42 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 44 H 0.24 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -67.14 354.29 3.47 -63.68 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.96 Total: 20.83 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 5.60 Total: -26.22 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -3.62 Total: -82.75 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.50 Total: -22.07 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.14 3.47 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.882 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds