Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47708 * 2 1 4 4 N 1.46497 * 109.47888 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99684 * 276.29708 * 4 3 2 6 6 H 1.08001 * 120.00159 * 133.93280 * 5 4 3 7 7 C 1.38945 * 119.99867 * 313.92470 * 5 4 3 8 8 N 1.31411 * 120.00289 * 345.36772 * 7 5 4 9 9 Si 1.86802 * 120.00130 * 165.36983 * 7 5 4 10 10 H 1.48502 * 109.47091 * 59.99668 * 9 7 5 11 11 H 1.48500 * 109.47274 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47040 * 300.00287 * 9 7 5 13 13 C 1.34773 * 120.00418 * 96.28645 * 4 3 2 14 14 O 1.21289 * 120.00402 * 185.66895 * 13 4 3 15 15 C 1.50701 * 119.99644 * 5.66977 * 13 4 3 16 16 H 1.09000 * 112.85239 * 286.50012 * 15 13 4 17 17 C 1.53775 * 113.61607 * 57.81203 * 15 13 4 18 18 C 1.53948 * 87.11599 * 89.18683 * 17 15 13 19 19 H 1.08998 * 113.67227 * 139.89552 * 18 17 15 20 20 C 1.50701 * 113.61117 * 270.84452 * 18 17 15 21 21 C 1.50703 * 120.00062 * 234.02068 * 20 18 17 22 22 O 1.20758 * 120.00228 * 54.02469 * 20 18 17 23 23 C 1.53782 * 87.01866 * 25.36227 * 18 17 15 24 24 C 1.52999 * 113.61730 * 220.04862 * 23 18 17 25 25 C 1.52998 * 113.61199 * 89.23145 * 23 18 17 26 26 H 1.09007 * 109.46841 * 60.00257 * 1 2 3 27 27 H 1.08995 * 109.47450 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47599 * 300.00396 * 1 2 3 29 29 H 1.09000 * 109.47304 * 239.99144 * 2 1 3 30 30 H 1.09005 * 109.47116 * 120.00213 * 2 1 3 31 31 H 1.09000 * 109.47436 * 59.99225 * 3 2 1 32 32 H 1.09005 * 109.47006 * 300.00280 * 3 2 1 33 33 H 0.96996 * 120.00296 * 180.02562 * 8 7 5 34 34 H 1.09000 * 113.61935 * 203.66612 * 17 15 13 35 35 H 1.09003 * 113.61288 * 334.47900 * 17 15 13 36 36 H 1.08994 * 109.47217 * 90.00033 * 21 20 18 37 37 H 1.09006 * 109.47196 * 210.00579 * 21 20 18 38 38 H 1.09002 * 109.46615 * 329.99936 * 21 20 18 39 39 H 1.09004 * 109.47238 * 272.80197 * 24 23 18 40 40 H 1.09000 * 109.47195 * 152.80121 * 24 23 18 41 41 H 1.09001 * 109.46702 * 32.80048 * 24 23 18 42 42 H 1.09003 * 109.47143 * 200.86507 * 25 23 18 43 43 H 1.08999 * 109.47213 * 320.86093 * 25 23 18 44 44 H 1.09001 * 109.47455 * 80.86642 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.3124 1.1811 6 1 5.0220 0.6272 1.2501 7 6 3.8139 2.0622 2.2888 8 7 3.0081 3.0901 2.1436 9 14 4.4537 1.6093 3.9843 10 1 5.9370 1.6813 3.9892 11 1 3.9083 2.5574 4.9888 12 1 4.0241 0.2287 4.3230 13 6 4.1795 1.5700 -1.1592 14 8 5.3879 1.4672 -1.1726 15 6 3.4320 1.8405 -2.4395 16 1 2.8933 0.9675 -2.8077 17 6 2.5798 3.1198 -2.3969 18 6 3.8236 3.8722 -2.9039 19 1 3.5994 4.6378 -3.6466 20 6 4.7193 4.3710 -1.7994 21 6 5.1054 5.8266 -1.7418 22 8 5.1276 3.6044 -0.9604 23 6 4.2831 2.5375 -3.5142 24 6 5.7845 2.2815 -3.3683 25 6 3.7773 2.3092 -4.9400 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 2.7458 3.6137 2.9168 34 1 1.7529 3.1176 -3.1070 35 1 2.2731 3.4068 -1.3910 36 1 4.3736 6.3735 -1.1475 37 1 6.0903 5.9235 -1.2847 38 1 5.1319 6.2356 -2.7519 39 1 6.3133 2.7328 -4.2079 40 1 5.9705 1.2076 -3.3567 41 1 6.1392 2.7218 -2.4365 42 1 3.8097 1.2444 -5.1708 43 1 2.7514 2.6679 -5.0233 44 1 4.4103 2.8525 -5.6415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129364135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = -29.152884 kcal Electronic energy + Delta-G solvation = -24849.691506 eV Core-core repulsion = 21576.186044 eV Total energy + Delta-G solvation = -3273.505463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01560 -37.67138 -36.56496 -34.94025 -32.51340 -31.19719 -30.32061 -29.76747 -26.96638 -26.52584 -25.45731 -24.09626 -22.50461 -20.61723 -20.45229 -18.75368 -17.00674 -16.59209 -16.05406 -15.13081 -14.84124 -14.59312 -14.44799 -14.18321 -13.78893 -13.68062 -13.31552 -13.03030 -12.86466 -12.70951 -12.20721 -12.14500 -11.89435 -11.67248 -11.42035 -11.41549 -11.21889 -11.10374 -10.95801 -10.85963 -10.75371 -10.43856 -10.32659 -10.14571 -10.10855 -9.72029 -9.52450 -9.43659 -8.69646 -8.47549 -7.71574 -6.98945 -6.02854 -3.75870 2.77723 3.33336 3.36247 3.40804 4.19460 4.39515 4.52157 4.80361 5.00551 5.13442 5.22250 5.29827 5.50570 5.59274 5.59567 5.71496 5.74933 5.80760 5.81491 5.87258 5.89636 5.99603 6.05757 6.09513 6.18867 6.28601 6.33460 6.37609 6.44241 6.46957 6.54238 6.63459 6.67120 6.69143 6.73100 6.94341 7.09453 7.37554 7.43671 7.82704 8.44283 8.61969 8.88099 9.55124 9.73310 10.42486 11.01339 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.008210 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.119914 B = 3409.824527 C = 4225.295469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.097 3.903 4 N -0.449 5.449 5 C -0.286 4.286 6 H 0.077 0.923 7 C 0.040 3.960 8 N -0.878 5.878 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.514 3.486 14 O -0.555 6.555 15 C -0.121 4.121 16 H 0.081 0.919 17 C -0.119 4.119 18 C -0.156 4.156 19 H 0.086 0.914 20 C 0.330 3.670 21 C -0.193 4.193 22 O -0.362 6.362 23 C -0.052 4.052 24 C -0.135 4.135 25 C -0.123 4.123 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.022 0.978 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 2.583 -10.653 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.028 4.028 4 N -0.170 5.170 5 C -0.414 4.414 6 H 0.094 0.906 7 C -0.163 4.163 8 N -0.517 5.517 9 Si 0.737 3.263 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.302 3.698 14 O -0.436 6.436 15 C -0.143 4.143 16 H 0.099 0.901 17 C -0.157 4.157 18 C -0.175 4.175 19 H 0.104 0.896 20 C 0.200 3.800 21 C -0.250 4.250 22 O -0.230 6.230 23 C -0.053 4.053 24 C -0.191 4.191 25 C -0.180 4.180 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.734 2.251 -10.041 10.947 hybrid contribution -0.083 0.044 0.736 0.742 sum -3.817 2.295 -9.305 10.316 Atomic orbital electron populations 1.21683 0.96806 1.00427 1.01274 1.21914 0.94310 0.99876 1.01457 1.21737 0.83510 0.94259 1.03265 1.43123 1.03536 1.65440 1.04859 1.19057 1.14511 1.21272 0.86572 0.90552 1.25331 0.97233 0.93986 0.99710 1.69847 1.35821 1.15870 1.30154 0.86285 0.79350 0.77994 0.82639 1.20098 1.21331 1.20309 1.19375 0.87338 0.79029 0.84043 1.90455 1.14171 1.53369 1.85637 1.22606 0.97509 0.97504 0.96710 0.90129 1.23017 0.94947 0.95171 1.02559 1.23068 0.98208 0.97739 0.98472 0.89583 1.23920 0.80257 0.90479 0.85331 1.22208 1.03473 0.96357 1.02981 1.90824 1.42821 1.55669 1.33639 1.21493 0.96902 0.93380 0.93518 1.22090 0.92662 1.02554 1.01830 1.21579 1.00447 1.01654 0.94353 0.93423 0.93699 0.92873 0.93648 0.91802 0.88484 0.92527 0.92979 0.89790 0.89164 0.89474 0.90427 0.91002 0.95902 0.92431 0.88468 0.92300 0.92637 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.14 -2.62 6.22 -26.74 -0.17 -2.78 16 3 C 0.10 2.13 4.46 -4.05 -0.02 2.11 16 4 N -0.45 -11.49 2.46 -114.82 -0.28 -11.78 16 5 C -0.29 -8.15 8.75 -14.93 -0.13 -8.29 16 6 H 0.08 2.32 7.84 -52.49 -0.41 1.90 16 7 C 0.04 1.11 5.11 -17.47 -0.09 1.02 16 8 N -0.88 -24.36 11.59 55.50 0.64 -23.71 16 9 Si 0.91 21.83 29.58 -169.99 -5.03 16.80 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.51 12.62 4.33 -10.99 -0.05 12.57 16 14 O -0.55 -15.33 10.87 -19.41 -0.21 -15.55 16 15 C -0.12 -2.32 2.99 -90.96 -0.27 -2.59 16 16 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 17 C -0.12 -2.00 5.51 -25.83 -0.14 -2.14 16 18 C -0.16 -2.52 3.79 -90.87 -0.34 -2.87 16 19 H 0.09 1.11 8.06 -51.93 -0.42 0.70 16 20 C 0.33 6.33 5.51 -29.03 -0.16 6.17 16 21 C -0.19 -2.85 10.24 36.01 0.37 -2.49 16 22 O -0.36 -9.00 10.68 -18.96 -0.20 -9.20 16 23 C -0.05 -0.87 1.32 -153.70 -0.20 -1.08 16 24 C -0.13 -2.56 7.35 37.16 0.27 -2.29 16 25 C -0.12 -1.56 9.05 37.16 0.34 -1.23 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 2.39 5.86 -51.93 -0.30 2.09 16 32 H 0.06 1.12 4.11 -51.93 -0.21 0.91 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.12 7.64 -51.93 -0.40 0.72 16 35 H 0.09 1.77 6.16 -51.93 -0.32 1.45 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.02 0.36 8.11 -51.93 -0.42 -0.06 16 40 H 0.06 1.16 7.63 -51.93 -0.40 0.77 16 41 H 0.10 2.20 3.88 -51.93 -0.20 1.99 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 44 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -32.47 335.44 -7.50 -39.97 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.24 Total: 4.13 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.23 Total: -5.71 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.36 Total: -35.49 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.41 Total: -24.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.47 -7.50 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129364135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds