Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99943 * 2 1 4 4 O 1.42901 * 109.46808 * 134.99996 * 3 2 1 5 5 C 1.42903 * 113.99533 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46764 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47103 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47460 * 180.02562 * 7 6 5 9 9 O 1.21296 * 119.99694 * 353.54512 * 8 7 6 10 10 N 1.34772 * 120.00340 * 173.53959 * 8 7 6 11 11 C 1.37102 * 120.00005 * 356.29413 * 10 8 7 12 12 H 1.08000 * 120.00072 * 232.08492 * 11 10 8 13 13 C 1.38947 * 119.99891 * 52.08117 * 11 10 8 14 14 N 1.31420 * 119.99839 * 26.91774 * 13 11 10 15 15 Si 1.86793 * 120.00235 * 206.91470 * 13 11 10 16 16 H 1.48508 * 109.47229 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47140 * 119.99915 * 15 13 11 18 18 H 1.48497 * 109.47634 * 240.00351 * 15 13 11 19 19 C 1.46500 * 120.00070 * 176.02010 * 10 8 7 20 20 C 1.54268 * 110.03187 * 237.90779 * 19 10 8 21 21 C 1.54967 * 104.15974 * 217.13991 * 20 19 10 22 22 C 1.54891 * 102.78110 * 37.88373 * 21 20 19 23 23 C 1.53880 * 110.03411 * 120.69101 * 19 10 8 24 24 H 1.08000 * 119.99873 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00192 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99873 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47328 * 14.99564 * 3 2 1 28 28 H 1.09001 * 109.46684 * 254.99476 * 3 2 1 29 29 H 1.09005 * 109.47301 * 60.00472 * 5 4 3 30 30 H 1.08993 * 109.47202 * 299.99787 * 5 4 3 31 31 H 1.09005 * 109.46969 * 60.00623 * 6 5 4 32 32 H 1.09000 * 109.47580 * 300.00437 * 6 5 4 33 33 H 1.09005 * 109.46674 * 60.00473 * 7 6 5 34 34 H 1.09000 * 109.47285 * 300.00649 * 7 6 5 35 35 H 0.97000 * 119.99590 * 184.88523 * 14 13 11 36 36 H 1.08998 * 110.02007 * 359.30187 * 19 10 8 37 37 H 1.09001 * 110.48296 * 335.78134 * 20 19 10 38 38 H 1.08998 * 110.48500 * 98.42648 * 20 19 10 39 39 H 1.09002 * 110.71759 * 279.57012 * 21 20 19 40 40 H 1.09003 * 110.92657 * 156.29615 * 21 20 19 41 41 H 1.08998 * 110.49020 * 203.40729 * 22 21 20 42 42 H 1.09001 * 110.59665 * 80.82105 * 22 21 20 43 43 H 1.09000 * 110.03267 * 238.57436 * 23 19 10 44 44 H 1.09007 * 110.03029 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9084 2.4348 1.0320 6 6 5.0105 2.2541 2.0779 7 6 5.8479 3.5318 2.1624 8 6 6.9338 3.3536 3.1920 9 8 6.9585 2.3554 3.8808 10 7 7.8775 4.3031 3.3474 11 6 7.8946 5.3948 2.5183 12 1 8.8032 5.6661 2.0013 13 6 6.7429 6.1522 2.3430 14 7 5.8345 6.1957 3.2917 15 14 6.4859 7.1085 0.7592 16 1 7.6463 6.8941 -0.1424 17 1 5.2467 6.6359 0.0911 18 1 6.3602 8.5553 1.0692 19 6 8.8815 4.1716 4.4062 20 6 8.8250 5.3960 5.3429 21 6 10.3073 5.6633 5.7073 22 6 11.0461 5.3623 4.3797 23 6 10.2932 4.1498 3.7942 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3855 2.1161 0.2659 28 1 2.4756 1.4867 -0.9927 29 1 3.2689 3.2696 1.3193 30 1 4.3587 2.6395 0.0608 31 1 5.6501 1.4193 1.7911 32 1 4.5599 2.0496 3.0490 33 1 5.2085 4.3668 2.4490 34 1 6.2985 3.7358 1.1911 35 1 4.9993 6.6660 3.1422 36 1 8.7069 3.2582 4.9747 37 1 8.3993 6.2545 4.8234 38 1 8.2469 5.1653 6.2378 39 1 10.6385 4.9873 6.4956 40 1 10.4541 6.7018 6.0042 41 1 12.0883 5.1075 4.5723 42 1 10.9815 6.2145 3.7031 43 1 10.8039 3.2261 4.0664 44 1 10.2313 4.2366 2.7094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173637927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -77.215188 kcal Electronic energy + Delta-G solvation = -22598.763416 eV Core-core repulsion = 19323.173815 eV Total energy + Delta-G solvation = -3275.589600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.99262 -37.97046 -36.70575 -34.20075 -34.11731 -32.42258 -31.34145 -27.92656 -27.61964 -26.47974 -25.15019 -24.44127 -21.50243 -20.01725 -19.95626 -19.30488 -19.22376 -16.77758 -16.31238 -15.99764 -15.68996 -15.36555 -14.94987 -14.62092 -14.37700 -14.23979 -13.52752 -13.43826 -12.88149 -12.67444 -12.59366 -12.22297 -11.83563 -11.54641 -11.53968 -11.11712 -11.04372 -10.94160 -10.73699 -10.59695 -10.48893 -10.44719 -10.35687 -10.33273 -10.12938 -9.96029 -9.72699 -9.62930 -9.26434 -8.73517 -8.25995 -7.31846 -6.43133 -4.21207 2.05159 3.06422 3.19333 3.22715 3.90362 4.06171 4.16135 4.80364 4.81283 4.99336 5.04629 5.33019 5.38937 5.39628 5.42950 5.51679 5.56864 5.63068 5.76408 5.83123 6.10634 6.19752 6.24099 6.28400 6.32726 6.36126 6.41146 6.42970 6.51679 6.53606 6.56391 6.57513 6.75438 6.78300 6.94609 6.98079 7.12259 7.17992 7.33732 7.42311 7.46074 8.01531 8.64424 8.91033 9.62225 10.05671 10.57520 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.004221 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.967273 B = 6632.605977 C = 7576.524079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C 0.085 3.915 4 O -0.385 6.385 5 C 0.064 3.936 6 C -0.100 4.100 7 C -0.126 4.126 8 C 0.512 3.488 9 O -0.612 6.612 10 N -0.448 5.448 11 C -0.334 4.334 12 H 0.082 0.918 13 C 0.055 3.945 14 N -0.845 5.845 15 Si 0.890 3.110 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.281 1.281 19 C 0.132 3.868 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.268 0.732 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -2.715 -4.778 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C 0.009 3.991 4 O -0.304 6.304 5 C -0.013 4.013 6 C -0.138 4.138 7 C -0.166 4.166 8 C 0.303 3.697 9 O -0.499 6.499 10 N -0.168 5.168 11 C -0.462 4.462 12 H 0.100 0.900 13 C -0.152 4.152 14 N -0.480 5.480 15 Si 0.716 3.284 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.207 1.207 19 C 0.028 3.972 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.115 0.885 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.567 -3.212 -4.242 5.908 hybrid contribution -0.380 0.979 -0.951 1.417 sum -2.947 -2.234 -5.193 6.375 Atomic orbital electron populations 1.23803 0.95583 1.02082 1.01021 1.22811 0.95638 0.98439 0.99401 1.21507 0.89368 0.95491 0.92763 1.87917 1.44355 1.38094 1.60082 1.22630 0.92992 0.86357 0.99289 1.21269 0.95347 0.98831 0.98331 1.21581 0.97167 0.98269 0.99574 1.20232 0.83343 0.81706 0.84441 1.90499 1.77678 1.30830 1.50852 1.43459 1.26475 1.18840 1.27981 1.19157 0.98839 1.06195 1.21993 0.89998 1.25468 0.97703 0.95102 0.96960 1.70178 1.08379 1.40019 1.29421 0.86477 0.78971 0.79577 0.83422 1.18931 1.20204 1.20729 1.21576 0.88243 0.97916 0.89511 1.22597 0.94561 1.00287 0.98426 1.22456 0.96754 1.00043 0.96846 1.22253 0.97552 0.98567 0.97009 1.22401 0.95897 0.96907 1.01312 0.88507 0.87961 0.86620 0.92993 0.92558 0.93415 0.93530 0.91616 0.91082 0.87344 0.90445 0.92139 0.90526 0.88998 0.93169 0.92602 0.92461 0.93029 0.91722 0.92994 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 14.31 29.01 0.42 -1.39 16 2 C -0.14 -1.67 9.89 -36.03 -0.36 -2.02 16 3 C 0.09 1.11 6.35 36.01 0.23 1.34 16 4 O -0.38 -6.46 10.33 -35.23 -0.36 -6.82 16 5 C 0.06 1.08 5.94 37.16 0.22 1.30 16 6 C -0.10 -2.01 4.90 -26.73 -0.13 -2.14 16 7 C -0.13 -2.81 3.86 -27.88 -0.11 -2.92 16 8 C 0.51 13.01 7.26 -10.99 -0.08 12.93 16 9 O -0.61 -16.85 15.34 5.54 0.09 -16.77 16 10 N -0.45 -10.93 2.37 -106.54 -0.25 -11.19 16 11 C -0.33 -8.05 6.79 -14.93 -0.10 -8.15 16 12 H 0.08 1.95 7.29 -52.49 -0.38 1.57 16 13 C 0.06 1.30 3.35 -17.47 -0.06 1.25 16 14 N -0.84 -21.18 11.58 55.50 0.64 -20.54 16 15 Si 0.89 18.34 29.63 -169.99 -5.04 13.30 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 C 0.13 2.91 3.29 -66.81 -0.22 2.69 16 20 C -0.12 -2.48 6.42 -25.03 -0.16 -2.64 16 21 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 22 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 23 C -0.13 -2.39 6.26 -25.61 -0.16 -2.55 16 24 H 0.10 0.85 7.90 -52.49 -0.41 0.44 16 25 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.05 0.63 7.86 -51.93 -0.41 0.22 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 33 H 0.11 2.55 5.46 -51.93 -0.28 2.26 16 34 H 0.08 1.65 7.75 -51.93 -0.40 1.25 16 35 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 36 H 0.08 1.81 6.95 -51.93 -0.36 1.45 16 37 H 0.09 2.14 7.02 -51.93 -0.36 1.78 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.40 6.95 -51.92 -0.36 1.04 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -27.75 353.98 -8.05 -35.80 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.60 Total: 7.47 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.85 Total: -6.59 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.39 Total: -31.72 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.28 Total: -23.59 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.04 Total: 13.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.75 -8.05 -35.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173637927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.417 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds