Wall clock time and date at job start Tue Mar 31 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46986 * 2 1 4 4 C 1.52994 * 109.47144 * 120.00047 * 2 1 3 5 5 O 1.42901 * 109.46919 * 174.99821 * 4 2 1 6 6 C 1.42906 * 113.99925 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46981 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46809 * 185.00403 * 7 6 5 9 9 N 1.46895 * 109.46977 * 65.00666 * 7 6 5 10 10 C 1.46901 * 111.00427 * 154.99578 * 9 7 6 11 11 C 1.53000 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.46774 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99760 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99410 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99665 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00278 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47098 * 90.00171 * 16 14 12 18 18 H 1.48503 * 109.46912 * 210.00121 * 16 14 12 19 19 H 1.48501 * 109.47383 * 330.00095 * 16 14 12 20 20 C 1.50696 * 109.47388 * 305.00147 * 7 6 5 21 21 C 1.34512 * 125.79261 * 259.99868 * 20 7 6 22 22 C 1.41379 * 106.84086 * 180.02562 * 21 20 7 23 23 C 1.34512 * 106.84332 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.41872 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46591 * 300.00110 * 1 2 3 26 26 H 1.08998 * 109.46802 * 59.99774 * 1 2 3 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47094 * 240.00290 * 2 1 3 29 29 H 1.09004 * 109.46863 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47158 * 300.00135 * 3 2 1 31 31 H 1.08997 * 109.46967 * 60.00212 * 3 2 1 32 32 H 1.08994 * 109.47175 * 55.00043 * 4 2 1 33 33 H 1.08993 * 109.47239 * 294.99918 * 4 2 1 34 34 H 1.09001 * 109.46457 * 60.00151 * 6 5 4 35 35 H 1.08997 * 109.46975 * 300.00180 * 6 5 4 36 36 H 1.00898 * 111.00422 * 31.04090 * 9 7 6 37 37 H 1.09001 * 109.47192 * 300.00109 * 10 9 7 38 38 H 1.09002 * 109.46764 * 59.99967 * 10 9 7 39 39 H 1.09001 * 109.46900 * 299.99941 * 11 10 9 40 40 H 1.08999 * 109.47302 * 59.99949 * 11 10 9 41 41 H 0.96994 * 120.00275 * 180.02562 * 15 14 12 42 42 H 1.07996 * 126.57559 * 359.97438 * 21 20 7 43 43 H 1.08007 * 126.57604 * 180.02562 * 22 21 20 44 44 H 1.08004 * 125.79431 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4846 2.3180 7 6 5.5650 -1.5374 2.1501 8 1 6.0003 -2.1182 2.9632 9 7 6.1083 -0.1728 2.1776 10 6 7.5123 -0.1737 2.6098 11 6 8.0420 1.2616 2.6252 12 6 9.4826 1.2606 3.0680 13 1 9.9713 0.3293 3.3134 14 6 10.1763 2.4486 3.1597 15 7 11.4336 2.4477 3.5456 16 14 9.3310 4.0591 2.7346 17 1 8.6972 4.6224 3.9536 18 1 10.3333 5.0204 2.2085 19 1 8.2905 3.8150 1.7035 20 6 5.9027 -2.1861 0.8326 21 6 6.2832 -3.4647 0.6599 22 6 6.4975 -3.6447 -0.7259 23 6 6.2358 -2.4652 -1.3172 24 8 5.8758 -1.5855 -0.3684 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -1.7197 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.6521 -2.4990 2.3864 35 1 3.7984 -0.9371 3.2276 36 1 5.5494 0.4272 2.7655 37 1 7.5840 -0.5986 3.6110 38 1 8.1050 -0.7720 1.9178 39 1 7.9704 1.6861 1.6238 40 1 7.4493 1.8603 3.3168 41 1 11.9216 3.2834 3.6106 42 1 6.4028 -4.2104 1.4319 43 1 6.8112 -4.5547 -1.2158 44 1 6.3029 -2.2605 -2.3755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184179758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:26 Heat of formation + Delta-G solvation = -45.245682 kcal Electronic energy + Delta-G solvation = -22445.512271 eV Core-core repulsion = 19171.308972 eV Total energy + Delta-G solvation = -3274.203299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17954 -38.55528 -36.56136 -34.89316 -33.12769 -32.57699 -31.24157 -28.86101 -27.74511 -27.22794 -25.74731 -23.86964 -22.66742 -21.37718 -20.44957 -20.27144 -19.77882 -17.25725 -16.89160 -16.50174 -16.07552 -15.95364 -15.04124 -14.83974 -14.54658 -14.26977 -13.97320 -13.80585 -13.22871 -13.09939 -12.63168 -12.60024 -12.49745 -12.39873 -12.33862 -12.17475 -11.88381 -11.44374 -11.28604 -11.06865 -10.98945 -10.94963 -10.67874 -10.07738 -9.86444 -9.77052 -9.58710 -9.58190 -9.19992 -8.50773 -8.15754 -8.01333 -6.01569 -3.99760 2.09749 2.87542 3.34572 3.36636 3.42271 3.49720 3.56305 4.42998 4.49485 4.68700 4.74090 4.81086 4.93095 5.08058 5.23502 5.26751 5.29735 5.32297 5.33160 5.35496 5.44228 5.47917 5.50785 5.62086 5.74193 5.81085 5.95204 6.04209 6.10894 6.16902 6.18059 6.24119 6.35833 6.38498 6.73682 6.79265 7.07626 7.20546 7.38060 7.51249 7.66232 7.75227 7.90309 8.55875 9.02478 9.60932 11.11804 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.004607 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.520954 B = 6076.829264 C = 7348.261698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.065 3.935 5 O -0.359 6.359 6 C 0.064 3.936 7 C 0.163 3.837 8 H 0.085 0.915 9 N -0.676 5.676 10 C 0.073 3.927 11 C -0.008 4.008 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.262 1.262 20 C 0.035 3.965 21 C -0.232 4.232 22 C -0.219 4.219 23 C -0.051 4.051 24 O -0.138 6.138 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.343 0.657 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.009 0.991 41 H 0.263 0.737 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.259 -9.750 -6.232 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.012 4.012 5 O -0.278 6.278 6 C -0.013 4.013 7 C 0.053 3.947 8 H 0.103 0.897 9 N -0.309 5.309 10 C -0.055 4.055 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.018 4.018 21 C -0.252 4.252 22 C -0.238 4.238 23 C -0.119 4.119 24 O -0.032 6.032 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -20.922 -9.233 -7.060 23.934 hybrid contribution -0.353 0.242 0.943 1.036 sum -21.275 -8.990 -6.117 23.893 Atomic orbital electron populations 1.21793 0.94722 1.01658 1.02102 1.21049 0.94946 0.97230 0.97892 1.21785 1.02783 0.94649 1.00999 1.22550 0.82023 0.98624 0.98035 1.88096 1.18888 1.78654 1.42134 1.22691 0.92388 0.96709 0.89548 1.20124 0.92488 0.92135 0.89980 0.89734 1.60442 1.04584 1.06631 1.59211 1.22060 0.85807 1.00633 0.96979 1.19524 0.96332 0.91513 0.97206 1.21065 0.94594 0.95038 1.45185 0.91138 1.24997 0.94686 0.99161 0.94542 1.69913 1.09278 1.27141 1.48018 0.86758 0.79684 0.83463 0.79330 1.20409 1.21441 1.18665 1.22123 1.02536 0.91132 0.85962 1.21474 1.09944 0.96781 0.97026 1.21661 1.08715 0.99239 0.94191 1.23986 1.04780 0.88772 0.94410 1.84165 1.65836 1.38501 1.14657 0.92624 0.92132 0.92776 0.90500 0.91035 0.93118 0.93115 0.93977 0.93622 0.92753 0.92550 0.83800 0.95833 0.91696 0.95543 0.97274 0.92753 0.84181 0.84151 0.78839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.92 3.16 -90.62 -0.29 -1.20 16 3 C -0.14 -1.56 9.09 37.16 0.34 -1.22 16 4 C 0.06 0.67 5.32 37.15 0.20 0.87 16 5 O -0.36 -4.82 9.20 -35.23 -0.32 -5.14 16 6 C 0.06 0.76 5.48 37.16 0.20 0.96 16 7 C 0.16 2.35 2.87 -68.87 -0.20 2.15 16 8 H 0.09 1.11 7.79 -51.93 -0.40 0.70 16 9 N -0.68 -11.72 6.24 -107.95 -0.67 -12.40 16 10 C 0.07 1.51 5.42 -3.82 -0.02 1.49 16 11 C -0.01 -0.20 4.30 -27.88 -0.12 -0.32 16 12 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 16 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 20 C 0.04 0.56 5.47 -35.63 -0.19 0.36 16 21 C -0.23 -3.36 10.80 -39.70 -0.43 -3.79 16 22 C -0.22 -2.97 10.91 -39.70 -0.43 -3.40 16 23 C -0.05 -0.71 12.09 29.41 0.36 -0.35 16 24 O -0.14 -2.38 10.52 5.71 0.06 -2.32 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 36 H 0.34 5.48 8.28 -39.29 -0.33 5.15 16 37 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 38 H 0.06 1.43 8.00 -51.93 -0.42 1.02 16 39 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 40 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.19 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -33.22 363.86 -7.84 -41.06 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.81 Total: 2.10 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.68 Total: -18.80 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.10 Total: -39.97 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.26 Total: -7.46 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.22 -7.84 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184179758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.186 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds