Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46869 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99509 * 2 1 3 5 5 O 1.42905 * 109.47264 * 175.00315 * 4 2 1 6 6 C 1.42901 * 114.00134 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47091 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47444 * 175.00243 * 7 6 5 9 9 N 1.46904 * 109.47219 * 295.00266 * 7 6 5 10 10 C 1.46897 * 111.00087 * 205.00002 * 9 7 6 11 11 C 1.53001 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00150 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99844 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99981 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47375 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47064 * 119.99918 * 16 14 12 19 19 H 1.48500 * 109.46774 * 239.99962 * 16 14 12 20 20 C 1.50703 * 109.46935 * 55.00002 * 7 6 5 21 21 C 1.34517 * 125.78677 * 100.00296 * 20 7 6 22 22 C 1.41383 * 106.83829 * 179.97438 * 21 20 7 23 23 C 1.34513 * 106.84299 * 0.02562 * 22 21 20 24 24 O 1.34298 * 125.79082 * 279.69125 * 20 7 6 25 25 H 1.08998 * 109.47430 * 300.00143 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00815 * 1 2 3 27 27 H 1.09008 * 109.46731 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47430 * 239.99857 * 2 1 3 29 29 H 1.08999 * 109.46294 * 300.00128 * 3 2 1 30 30 H 1.08998 * 109.47211 * 59.99723 * 3 2 1 31 31 H 1.09000 * 109.47128 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47289 * 55.00149 * 4 2 1 33 33 H 1.09004 * 109.47261 * 295.00405 * 4 2 1 34 34 H 1.08994 * 109.47036 * 300.00109 * 6 5 4 35 35 H 1.09002 * 109.46796 * 60.00253 * 6 5 4 36 36 H 1.00903 * 110.99791 * 328.95612 * 9 7 6 37 37 H 1.08999 * 109.47257 * 299.99772 * 10 9 7 38 38 H 1.08999 * 109.47131 * 60.00010 * 10 9 7 39 39 H 1.09007 * 109.46747 * 299.99636 * 11 10 9 40 40 H 1.08993 * 109.47620 * 59.99674 * 11 10 9 41 41 H 0.97001 * 120.00004 * 180.02562 * 15 14 12 42 42 H 1.07995 * 126.57663 * 0.03418 * 21 20 7 43 43 H 1.08002 * 126.57847 * 179.97438 * 22 21 20 44 44 H 1.08002 * 125.79253 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 3.4643 -0.8236 1.1921 6 6 4.0452 -1.4843 2.3182 7 6 5.5650 -1.5370 2.1504 8 1 6.0152 -1.9605 3.0483 9 7 5.9010 -2.3754 0.9919 10 6 7.2523 -2.9366 1.1225 11 6 7.5658 -3.8012 -0.1002 12 6 8.9518 -4.3774 0.0340 13 1 9.5495 -4.1494 0.9042 14 6 9.4569 -5.1958 -0.9541 15 7 8.7289 -5.4739 -2.0135 16 14 11.1752 -5.9094 -0.7880 17 1 11.7821 -5.4473 0.4862 18 1 11.0976 -7.3924 -0.7907 19 1 12.0120 -5.4553 -1.9276 20 6 6.0948 -0.1431 1.9323 21 6 6.6688 0.6355 2.8671 22 6 7.0144 1.8506 2.2323 23 6 6.6304 1.7421 0.9477 24 8 6.0794 0.5301 0.7704 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4427 -0.0005 32 1 1.6055 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 3.7984 -0.9368 3.2277 35 1 3.6522 -2.4987 2.3867 36 1 5.2169 -3.1059 0.8637 37 1 7.9776 -2.1257 1.1891 38 1 7.3065 -3.5475 2.0235 39 1 6.8405 -4.6122 -0.1673 40 1 7.5117 -3.1900 -1.0010 41 1 9.0841 -6.0499 -2.7084 42 1 6.8347 0.3808 3.9034 43 1 7.4938 2.7027 2.6909 44 1 6.7499 2.4990 0.1866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184179773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = -48.462903 kcal Electronic energy + Delta-G solvation = -22387.577812 eV Core-core repulsion = 19113.235004 eV Total energy + Delta-G solvation = -3274.342808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.13407 -38.48224 -36.46218 -34.81342 -33.13787 -32.54433 -31.02515 -28.57080 -27.52850 -27.21135 -25.66267 -23.91653 -22.60973 -21.34772 -20.55374 -20.26807 -19.73753 -17.20835 -16.63534 -16.31526 -16.02575 -15.71848 -15.18845 -14.65633 -14.40857 -14.37959 -14.06887 -13.68260 -13.29539 -12.86291 -12.65447 -12.46967 -12.41220 -12.36077 -12.20533 -12.03728 -11.72353 -11.31340 -11.07288 -11.00709 -10.94043 -10.88406 -10.62356 -10.50018 -10.01199 -9.58500 -9.53789 -9.36327 -9.10545 -8.33093 -8.11196 -7.87862 -5.96813 -3.99195 2.14504 2.91116 3.33080 3.40272 3.41692 3.44607 3.63144 4.42221 4.60546 4.75154 4.78472 4.86928 4.99418 5.13421 5.28353 5.32692 5.34213 5.37205 5.39154 5.41120 5.50106 5.51340 5.57604 5.66116 5.75453 5.85504 5.97703 6.08311 6.14621 6.22427 6.31685 6.32193 6.37132 6.44540 6.78457 7.00005 7.23917 7.38862 7.65321 7.74863 7.83741 7.96058 8.11728 8.46248 9.08179 9.64323 11.14639 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.003929 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.734927 B = 7124.518879 C = 8068.362949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.065 3.935 5 O -0.358 6.358 6 C 0.064 3.936 7 C 0.162 3.838 8 H 0.083 0.917 9 N -0.673 5.673 10 C 0.066 3.934 11 C 0.027 3.973 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.038 3.962 21 C -0.235 4.235 22 C -0.219 4.219 23 C -0.051 4.051 24 O -0.137 6.137 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.344 0.656 37 H 0.058 0.942 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.422 13.336 9.140 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.012 4.012 5 O -0.277 6.277 6 C -0.013 4.013 7 C 0.051 3.949 8 H 0.100 0.900 9 N -0.306 5.306 10 C -0.062 4.062 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.015 4.015 21 C -0.255 4.255 22 C -0.239 4.239 23 C -0.120 4.120 24 O -0.030 6.030 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.228 13.711 8.155 21.376 hybrid contribution 0.873 -1.008 1.134 1.751 sum -13.355 12.703 9.289 20.640 Atomic orbital electron populations 1.21785 0.94698 1.01813 1.01933 1.21064 0.94979 0.97023 0.98235 1.21761 1.02422 0.94964 1.00810 1.22547 0.82096 0.98808 0.97755 1.88102 1.18857 1.78521 1.42212 1.22681 0.92397 0.96707 0.89502 1.20139 0.92351 0.87833 0.94571 0.89961 1.60444 1.05496 1.26607 1.38008 1.22260 0.87223 0.97163 0.99586 1.19049 0.96038 0.93689 0.92293 1.21207 1.00352 1.29022 1.05314 0.92748 1.25000 0.97561 0.96506 0.95299 1.69989 1.36857 1.37197 1.09142 0.86542 0.84674 0.78755 0.78055 1.19779 1.21045 1.20981 1.22160 1.01438 0.94514 0.83340 1.21459 1.07876 0.95595 1.00558 1.21646 1.07684 0.99785 0.94749 1.23982 1.02087 0.87600 0.98337 1.84180 1.61457 1.23621 1.33724 0.92801 0.92137 0.92601 0.90035 0.93072 0.93383 0.91427 0.93664 0.93979 0.92869 0.92564 0.83671 0.92334 0.96504 0.96774 0.95522 0.93074 0.84274 0.84230 0.78884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.99 3.16 -90.62 -0.29 -1.28 16 3 C -0.14 -1.51 9.09 37.16 0.34 -1.17 16 4 C 0.06 0.72 5.32 37.16 0.20 0.91 16 5 O -0.36 -5.07 9.21 -35.23 -0.32 -5.39 16 6 C 0.06 0.81 5.48 37.16 0.20 1.01 16 7 C 0.16 2.45 2.87 -68.86 -0.20 2.25 16 8 H 0.08 1.13 7.79 -51.93 -0.40 0.73 16 9 N -0.67 -12.44 6.24 -107.95 -0.67 -13.11 16 10 C 0.07 1.42 5.42 -3.82 -0.02 1.39 16 11 C 0.03 0.71 5.23 -27.89 -0.15 0.57 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C 0.04 0.63 5.47 -35.62 -0.19 0.43 16 21 C -0.24 -3.47 10.80 -39.70 -0.43 -3.89 16 22 C -0.22 -3.02 10.91 -39.70 -0.43 -3.46 16 23 C -0.05 -0.73 12.09 29.42 0.36 -0.38 16 24 O -0.14 -2.42 10.53 5.71 0.06 -2.36 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 36 H 0.34 6.01 8.28 -39.29 -0.33 5.68 16 37 H 0.06 1.33 8.00 -51.93 -0.42 0.91 16 38 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -32.74 367.47 -8.21 -40.96 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.85 Total: 2.19 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -0.68 Total: -18.21 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.06 Total: -39.69 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.26 Total: -7.75 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.74 -8.21 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184179773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.506 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds