Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47279 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99620 * 2 1 3 5 5 C 1.53005 * 109.46927 * 179.97438 * 4 2 1 6 6 C 1.50696 * 109.47160 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99855 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00197 * 180.02562 * 6 5 4 9 9 C 1.47581 * 134.49354 * 180.02562 * 8 6 5 10 10 C 1.53945 * 86.11895 * 155.35947 * 9 8 6 11 11 O 1.42904 * 113.73986 * 269.15696 * 10 9 8 12 12 C 1.50694 * 113.74220 * 137.95139 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47582 * 134.48982 * 359.97438 * 8 6 5 21 21 C 1.53003 * 109.46889 * 60.00543 * 5 4 2 22 22 C 1.52998 * 109.46841 * 299.99860 * 21 5 4 23 23 H 1.09010 * 109.46870 * 180.02562 * 22 21 5 24 24 C 1.53000 * 109.47392 * 299.99636 * 22 21 5 25 25 C 1.52997 * 109.47458 * 60.00226 * 22 21 5 26 26 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47116 * 299.99921 * 1 2 3 28 28 H 1.08994 * 109.46740 * 59.99948 * 1 2 3 29 29 H 1.08999 * 109.46597 * 60.00599 * 4 2 1 30 30 H 1.09001 * 109.47451 * 300.00274 * 4 2 1 31 31 H 1.09001 * 109.47279 * 300.00380 * 5 4 2 32 32 H 1.09001 * 113.77016 * 41.05438 * 9 8 6 33 33 H 1.09003 * 113.76752 * 269.65764 * 9 8 6 34 34 H 0.96699 * 113.99284 * 178.07513 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09002 * 113.76615 * 90.34214 * 20 8 6 37 37 H 1.08991 * 113.77327 * 318.94082 * 20 8 6 38 38 H 1.09001 * 109.47293 * 59.99845 * 21 5 4 39 39 H 1.08994 * 109.46710 * 180.02562 * 21 5 4 40 40 H 1.08998 * 109.47210 * 180.02562 * 24 22 21 41 41 H 1.08994 * 109.47652 * 300.00716 * 24 22 21 42 42 H 1.09010 * 109.46540 * 60.00500 * 24 22 21 43 43 H 1.08998 * 109.47308 * 179.97438 * 25 22 21 44 44 H 1.09001 * 109.47065 * 59.99776 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0724 -1.4307 -2.4802 7 8 3.2842 -1.8913 -3.2787 8 7 5.3974 -1.5538 -2.6936 9 6 6.2219 -2.1650 -3.7541 10 6 7.3216 -1.1777 -3.3231 11 8 7.2921 0.0622 -4.0332 12 6 8.6976 -1.7893 -3.2659 13 1 8.8366 -2.8307 -3.5161 14 6 9.7794 -1.0195 -2.8939 15 7 9.6103 0.2488 -2.5897 16 14 11.4850 -1.7779 -2.8223 17 1 12.4673 -0.7478 -2.3988 18 1 11.4885 -2.8969 -1.8461 19 1 11.8551 -2.2916 -4.1655 20 6 6.6066 -1.1306 -1.9609 21 6 4.0805 -1.4417 -0.0003 22 6 3.5705 -0.7204 1.2489 23 1 3.9346 -1.2338 2.1390 24 6 4.0801 0.7222 1.2487 25 6 2.0405 -0.7209 1.2493 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.6767 -0.2074 -2.1392 30 1 1.6766 -1.7490 -1.2492 31 1 3.9330 0.3070 -1.2498 32 1 5.8435 -1.9891 -4.7611 33 1 6.4722 -3.2096 -3.5688 34 1 7.9629 0.6963 -3.7451 35 1 10.3713 0.7903 -2.3276 36 1 6.9701 -1.8710 -1.2483 37 1 6.5354 -0.1292 -1.5368 38 1 3.7175 -2.4695 0.0000 39 1 5.1705 -1.4409 -0.0003 40 1 3.7171 1.2359 2.1389 41 1 5.1700 0.7226 1.2484 42 1 3.7163 1.2358 0.3586 43 1 1.6772 -0.2075 2.1394 44 1 1.6775 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193986905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -83.279178 kcal Electronic energy + Delta-G solvation = -23462.275402 eV Core-core repulsion = 20186.422848 eV Total energy + Delta-G solvation = -3275.852555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15617 -38.68998 -37.04428 -33.97133 -33.15143 -32.19950 -31.66925 -28.48086 -26.79296 -26.42643 -25.40612 -25.23266 -22.79215 -21.26193 -19.86036 -18.63360 -18.21496 -17.32848 -16.25779 -15.74724 -15.13812 -15.00883 -14.89512 -14.24353 -14.07081 -13.86691 -13.78953 -13.42581 -12.99653 -12.69378 -12.44490 -12.29933 -12.03712 -11.90936 -11.79830 -11.54158 -11.49390 -11.17753 -11.09571 -11.02913 -10.95772 -10.84239 -10.54688 -10.38077 -10.29039 -10.13040 -9.86335 -9.52811 -9.07367 -8.75220 -8.37210 -7.78887 -6.39410 -4.49605 3.15807 3.21740 3.23778 3.27604 3.61947 4.18400 4.65972 4.68332 4.72892 4.85086 5.09326 5.17003 5.20700 5.30294 5.43000 5.45227 5.57515 5.63436 5.65527 5.72601 5.75248 5.83935 5.92365 5.96617 6.01359 6.03604 6.10693 6.19858 6.23445 6.27100 6.33805 6.36086 6.40223 6.47447 6.53662 6.58883 6.67360 6.73196 7.11300 7.63076 7.82881 8.52967 8.55691 8.83957 9.21597 9.46566 10.67099 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025900 B = 0.004543 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.822827 B = 6161.396008 C = 6718.287474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.090 4.090 5 C -0.100 4.100 6 C 0.531 3.469 7 O -0.568 6.568 8 N -0.631 5.631 9 C 0.109 3.891 10 C 0.238 3.762 11 O -0.573 6.573 12 C -0.537 4.537 13 H 0.070 0.930 14 C 0.073 3.927 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.285 1.285 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.080 3.920 21 C -0.107 4.107 22 C -0.089 4.089 23 H 0.070 0.930 24 C -0.153 4.153 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.392 0.608 35 H 0.274 0.726 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.988 0.627 9.206 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.128 4.128 5 C -0.121 4.121 6 C 0.320 3.680 7 O -0.448 6.448 8 N -0.364 5.364 9 C -0.013 4.013 10 C 0.197 3.803 11 O -0.386 6.386 12 C -0.576 4.576 13 H 0.088 0.912 14 C -0.129 4.129 15 N -0.539 5.539 16 Si 0.734 3.266 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.043 4.043 21 C -0.144 4.144 22 C -0.107 4.107 23 H 0.089 0.911 24 C -0.210 4.210 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.986 0.300 8.572 13.938 hybrid contribution 1.456 -0.058 0.464 1.529 sum -9.530 0.242 9.036 13.135 Atomic orbital electron populations 1.21807 0.95383 1.01708 1.01364 1.21204 0.95233 0.99938 0.94937 0.90911 1.21369 0.92859 1.01374 0.97216 1.21240 0.96954 1.00774 0.93098 1.20245 0.80789 0.79895 0.87032 1.90613 1.54783 1.51337 1.48102 1.50156 1.03616 1.55977 1.26618 1.23441 0.88273 0.97690 0.91855 1.19844 0.91436 0.83066 0.85997 1.86061 1.61306 1.27566 1.63627 1.21491 0.91602 0.97512 1.46954 0.91156 1.25055 0.99856 0.94804 0.93211 1.69312 1.32329 1.06450 1.45820 0.86400 0.82427 0.78914 0.78847 1.20999 1.19906 1.19864 1.24253 0.81140 0.98914 0.99951 1.21579 1.01321 0.98884 0.92665 1.21081 0.95307 0.96592 0.97733 0.91128 1.21957 1.01351 0.95974 1.01689 1.21634 0.95059 1.00542 0.97371 0.92785 0.92947 0.92714 0.91523 0.91493 0.88804 0.91291 0.89841 0.75241 0.91616 0.90196 0.91469 0.91850 0.90825 0.92983 0.92366 0.92072 0.92186 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.09 -1.06 2.45 -90.62 -0.22 -1.28 16 3 H 0.07 0.81 6.43 -51.93 -0.33 0.47 16 4 C -0.09 -1.28 3.77 -26.73 -0.10 -1.38 16 5 C -0.10 -1.58 2.08 -91.77 -0.19 -1.77 16 6 C 0.53 10.85 7.39 -10.99 -0.08 10.77 16 7 O -0.57 -13.25 16.71 5.55 0.09 -13.16 16 8 N -0.63 -13.35 3.57 -178.33 -0.64 -13.98 16 9 C 0.11 2.42 8.23 -2.97 -0.02 2.40 16 10 C 0.24 5.69 1.44 -90.86 -0.13 5.55 16 11 O -0.57 -14.74 13.48 -35.23 -0.48 -15.22 16 12 C -0.54 -13.39 8.62 -34.44 -0.30 -13.69 16 13 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.07 1.80 5.40 -17.82 -0.10 1.71 16 15 N -0.90 -22.47 11.09 55.43 0.61 -21.85 16 16 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.08 1.69 6.27 -2.99 -0.02 1.67 16 21 C -0.11 -1.48 4.61 -26.73 -0.12 -1.61 16 22 C -0.09 -1.00 3.19 -90.62 -0.29 -1.29 16 23 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 24 C -0.15 -1.70 8.50 37.16 0.32 -1.38 16 25 C -0.11 -1.13 4.73 -26.73 -0.13 -1.25 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.07 1.01 8.10 -51.93 -0.42 0.58 16 31 H 0.09 1.48 6.43 -51.93 -0.33 1.15 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 34 H 0.39 10.13 6.46 45.56 0.29 10.42 16 35 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.08 1.61 7.92 -51.93 -0.41 1.20 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.09 6.13 -51.93 -0.32 0.78 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.71 4.81 -51.92 -0.25 0.46 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -27.47 339.72 -8.16 -35.63 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.81 Total: 11.82 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.04 Total: -2.62 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.02 Total: -35.84 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.38 Total: -28.38 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.47 -8.16 -35.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.651 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds