Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47216 * 2 1 4 4 C 1.53005 * 109.47397 * 119.99987 * 2 1 3 5 5 C 1.52999 * 109.46513 * 60.00215 * 4 2 1 6 6 C 1.50703 * 109.46720 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00265 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99968 * 179.97438 * 6 5 4 9 9 C 1.47580 * 134.49361 * 180.02562 * 8 6 5 10 10 C 1.53946 * 86.11983 * 155.35824 * 9 8 6 11 11 O 1.42904 * 113.73900 * 269.15677 * 10 9 8 12 12 C 1.50694 * 113.74528 * 137.94828 * 10 9 8 13 13 H 1.08003 * 120.00664 * 256.77090 * 12 10 9 14 14 C 1.37884 * 119.99828 * 77.04212 * 12 10 9 15 15 N 1.31511 * 119.99863 * 185.84088 * 14 12 10 16 16 Si 1.86797 * 119.99761 * 5.83622 * 14 12 10 17 17 H 1.48496 * 109.47234 * 84.67480 * 16 14 12 18 18 H 1.48506 * 109.47019 * 204.67158 * 16 14 12 19 19 H 1.48505 * 109.47283 * 324.66817 * 16 14 12 20 20 C 1.47810 * 134.45582 * 359.87024 * 8 6 5 21 21 C 1.52996 * 109.47319 * 60.00392 * 5 4 2 22 22 C 1.52997 * 109.47231 * 299.99439 * 21 5 4 23 23 H 1.08994 * 109.47504 * 300.00295 * 22 21 5 24 24 C 1.52996 * 109.47231 * 179.97438 * 22 21 5 25 25 C 1.53003 * 109.47019 * 60.00083 * 22 21 5 26 26 H 1.08998 * 109.47637 * 299.99955 * 1 2 3 27 27 H 1.09006 * 109.47009 * 60.00386 * 1 2 3 28 28 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46774 * 300.00586 * 4 2 1 30 30 H 1.08997 * 109.47284 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47514 * 299.99916 * 5 4 2 32 32 H 1.09003 * 113.76823 * 41.05484 * 9 8 6 33 33 H 1.08999 * 113.76491 * 269.65776 * 9 8 6 34 34 H 0.96705 * 113.99471 * 172.51467 * 11 10 9 35 35 H 0.97002 * 119.99856 * 180.02562 * 15 14 12 36 36 H 1.09000 * 113.76976 * 90.37776 * 20 8 6 37 37 H 1.09007 * 113.83838 * 318.91741 * 20 8 6 38 38 H 1.08997 * 109.47534 * 59.99686 * 21 5 4 39 39 H 1.09003 * 109.47309 * 179.97438 * 21 5 4 40 40 H 1.09002 * 109.47216 * 299.99903 * 24 22 21 41 41 H 1.08994 * 109.47262 * 60.00336 * 24 22 21 42 42 H 1.09007 * 109.47273 * 180.02562 * 24 22 21 43 43 H 1.09000 * 109.47474 * 180.02562 * 25 22 21 44 44 H 1.09007 * 109.46963 * 59.99525 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 -2.1637 1.2491 6 6 2.0319 -2.8740 2.4799 7 8 2.7284 -2.2844 3.2787 8 7 1.7058 -4.1642 2.6934 9 6 2.0070 -5.1453 3.7540 10 6 0.7093 -5.8526 3.3233 11 8 -0.4495 -5.4110 4.0335 12 6 0.8267 -7.3539 3.2661 13 1 0.9242 -7.8521 2.3128 14 6 0.8041 -8.0920 4.4305 15 7 1.0213 -9.3885 4.3915 16 14 0.4650 -7.2504 6.0633 17 1 -1.0016 -7.1369 6.2666 18 1 1.0569 -8.0510 7.1652 19 1 1.0703 -5.8943 6.0564 20 6 0.9003 -5.1634 1.9602 21 6 2.0400 -2.8849 -0.0001 22 6 1.5300 -2.1637 -1.2493 23 1 0.4401 -2.1637 -1.2494 24 6 2.0406 -2.8845 -2.4985 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6766 -0.2075 2.1392 30 1 3.1300 -0.7216 1.2490 31 1 0.4400 -2.1638 1.2491 32 1 1.9676 -4.7297 4.7609 33 1 2.9082 -5.7297 3.5686 34 1 -1.2806 -5.7670 3.6902 35 1 1.0050 -9.9078 5.2106 36 1 1.4755 -5.7533 1.2465 37 1 -0.0211 -4.7624 1.5378 38 1 3.1300 -2.8849 -0.0001 39 1 1.6771 -3.9128 0.0000 40 1 3.1306 -2.8841 -2.4983 41 1 1.6777 -3.9123 -2.4988 42 1 1.6776 -2.3704 -3.3886 43 1 1.6763 -0.2072 -2.1390 44 1 3.1301 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193986915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -75.241848 kcal Electronic energy + Delta-G solvation = -23476.393902 eV Core-core repulsion = 20200.889872 eV Total energy + Delta-G solvation = -3275.504030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33109 -38.94599 -37.27338 -34.30482 -33.22582 -32.50096 -31.89378 -28.72989 -26.92115 -26.48011 -25.63371 -25.40054 -22.94038 -21.30624 -19.91051 -18.74392 -18.46292 -17.61237 -16.56950 -15.81612 -15.40268 -15.09513 -14.91101 -14.38469 -14.26844 -14.00512 -13.81864 -13.49186 -13.21303 -12.92284 -12.68984 -12.56957 -12.27657 -12.12103 -12.00881 -11.81141 -11.65206 -11.33818 -11.24651 -11.13273 -10.88906 -10.76245 -10.63248 -10.48250 -10.26079 -10.11687 -9.96363 -9.44041 -9.11038 -8.75447 -8.68017 -7.97019 -6.30367 -4.44773 3.10971 3.36395 3.39025 3.45359 3.58906 4.37136 4.51691 4.54472 4.61967 4.91457 4.97271 5.00151 5.05865 5.14311 5.20460 5.25958 5.37744 5.44640 5.53940 5.56589 5.59881 5.61931 5.73594 5.81893 5.84611 5.92154 5.93747 6.01089 6.07556 6.11310 6.17298 6.21757 6.23207 6.28613 6.34135 6.44384 6.45622 6.55643 6.79747 7.30845 8.04257 8.34032 8.62478 8.68162 8.74523 9.31172 10.78697 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.004663 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.731827 B = 6003.235746 C = 6448.207570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.092 4.092 5 C -0.100 4.100 6 C 0.532 3.468 7 O -0.561 6.561 8 N -0.633 5.633 9 C 0.113 3.887 10 C 0.198 3.802 11 O -0.560 6.560 12 C -0.554 4.554 13 H 0.084 0.916 14 C 0.087 3.913 15 N -0.882 5.882 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.307 1.307 19 H -0.259 1.259 20 C 0.082 3.918 21 C -0.106 4.106 22 C -0.091 4.091 23 H 0.074 0.926 24 C -0.147 4.147 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.372 0.628 35 H 0.269 0.731 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 14.076 -12.064 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.130 4.130 5 C -0.121 4.121 6 C 0.321 3.679 7 O -0.440 6.440 8 N -0.367 5.367 9 C -0.008 4.008 10 C 0.158 3.842 11 O -0.367 6.367 12 C -0.591 4.591 13 H 0.102 0.898 14 C -0.120 4.120 15 N -0.517 5.517 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.236 1.236 19 H -0.184 1.184 20 C -0.041 4.041 21 C -0.144 4.144 22 C -0.110 4.110 23 H 0.092 0.908 24 C -0.205 4.205 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.220 0.780 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.349 14.742 -11.240 18.541 hybrid contribution -0.578 -0.110 0.524 0.788 sum -0.927 14.632 -10.716 18.160 Atomic orbital electron populations 1.21956 0.95414 1.02159 1.01379 1.21130 0.95900 0.99075 0.94917 0.91167 1.21354 1.01152 0.93147 0.97348 1.21261 1.01904 0.95849 0.93089 1.20273 0.79790 0.80754 0.87055 1.90637 1.39609 1.65865 1.47935 1.50207 1.51190 1.08692 1.26631 1.23770 0.98980 0.86222 0.91863 1.20551 0.83864 0.93122 0.86691 1.86282 1.16815 1.74024 1.59587 1.21120 1.54356 0.87971 0.95690 0.89809 1.25004 0.92418 0.94633 0.99931 1.69935 1.46126 1.06422 1.29227 0.86401 0.79028 0.79445 0.81306 1.20586 1.23577 1.18355 1.24039 0.94017 0.87491 0.98554 1.21608 1.01171 0.99243 0.92371 1.21158 1.00635 0.94737 0.94428 0.90770 1.21825 1.01206 1.00402 0.97020 1.21645 1.00620 0.95133 0.97290 0.92770 0.92938 0.92038 0.91435 0.91396 0.88846 0.90945 0.88771 0.78004 0.92163 0.89340 0.91258 0.91662 0.90993 0.92760 0.92461 0.92828 0.92113 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.50 37.15 0.32 -1.10 16 2 C -0.09 -0.91 3.19 -90.62 -0.29 -1.20 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.09 -1.20 4.02 -26.73 -0.11 -1.30 16 5 C -0.10 -1.41 2.08 -91.77 -0.19 -1.60 16 6 C 0.53 10.11 7.39 -10.98 -0.08 10.03 16 7 O -0.56 -12.61 16.71 5.56 0.09 -12.51 16 8 N -0.63 -12.35 3.57 -178.09 -0.64 -12.99 16 9 C 0.11 2.48 7.28 -2.97 -0.02 2.46 16 10 C 0.20 4.26 0.93 -90.85 -0.08 4.18 16 11 O -0.56 -11.82 10.55 -35.23 -0.37 -12.20 16 12 C -0.55 -13.89 9.16 -34.44 -0.32 -14.21 16 13 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 14 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 15 N -0.88 -25.12 13.96 55.43 0.77 -24.34 16 16 Si 0.91 21.97 25.58 -169.99 -4.35 17.63 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.31 -7.54 7.11 56.52 0.40 -7.14 16 19 H -0.26 -6.30 5.30 56.52 0.30 -6.00 16 20 C 0.08 1.45 6.29 -2.85 -0.02 1.43 16 21 C -0.11 -1.30 4.36 -26.73 -0.12 -1.41 16 22 C -0.09 -0.89 2.45 -90.62 -0.22 -1.11 16 23 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 24 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 25 C -0.11 -1.01 4.73 -26.73 -0.13 -1.14 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 29 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.09 1.25 6.43 -51.93 -0.33 0.92 16 32 H 0.07 1.70 6.82 -51.93 -0.35 1.34 16 33 H 0.09 2.02 8.09 -51.93 -0.42 1.60 16 34 H 0.37 6.54 9.10 45.56 0.41 6.95 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.09 1.50 7.92 -51.93 -0.41 1.09 16 37 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.91 6.14 -51.93 -0.32 0.59 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -30.60 334.64 -7.19 -37.79 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.74 Total: 5.30 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.01 Total: -3.72 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.14 Total: -37.33 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.28 Total: -24.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.35 Total: 17.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.60 -7.19 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.452 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds