Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 C 1.53004 * 109.47057 * 239.99897 * 2 1 3 5 5 O 1.45201 * 109.47192 * 119.99957 * 2 1 3 6 6 C 1.34640 * 116.99687 * 59.99870 * 5 2 1 7 7 O 1.21502 * 120.00178 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99677 * 180.27490 * 6 5 2 9 9 C 1.46856 * 120.37978 * 359.44992 * 8 6 5 10 10 C 1.53889 * 108.51171 * 122.34530 * 9 8 6 11 11 C 1.51298 * 108.36976 * 49.64203 * 10 9 8 12 12 C 1.31001 * 120.80617 * 126.92929 * 11 10 9 13 13 C 1.50703 * 119.99907 * 7.06959 * 12 11 10 14 14 C 1.50702 * 109.47418 * 126.84584 * 13 12 11 15 15 H 1.08000 * 119.99813 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00184 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00034 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47275 * 89.99940 * 18 16 14 20 20 H 1.48504 * 109.47056 * 209.99892 * 18 16 14 21 21 H 1.48497 * 109.47089 * 329.99551 * 18 16 14 22 22 C 1.51297 * 118.38860 * 306.91011 * 11 10 9 23 23 C 1.46855 * 120.38070 * 179.72599 * 8 6 5 24 24 H 1.09000 * 109.46691 * 300.00146 * 1 2 3 25 25 H 1.09001 * 109.46877 * 60.00213 * 1 2 3 26 26 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47501 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47058 * 299.99677 * 3 2 1 29 29 H 1.09000 * 109.47443 * 60.00314 * 3 2 1 30 30 H 1.08996 * 109.47167 * 300.00027 * 4 2 1 31 31 H 1.08996 * 109.46662 * 60.00181 * 4 2 1 32 32 H 1.09001 * 109.46866 * 180.02562 * 4 2 1 33 33 H 1.08996 * 109.58711 * 242.16482 * 9 8 6 34 34 H 1.09005 * 109.58880 * 2.58875 * 9 8 6 35 35 H 1.09000 * 109.80995 * 289.86443 * 10 9 8 36 36 H 1.08997 * 109.62032 * 169.31207 * 10 9 8 37 37 H 1.07996 * 119.99832 * 187.06344 * 12 11 10 38 38 H 1.09000 * 109.46714 * 246.84542 * 13 12 11 39 39 H 1.09000 * 109.47158 * 6.84462 * 13 12 11 40 40 H 0.97001 * 120.00145 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.66805 * 293.22374 * 22 11 10 42 42 H 1.08995 * 109.70641 * 172.71251 * 22 11 10 43 43 H 1.08999 * 109.58518 * 357.40753 * 23 8 6 44 44 H 1.08998 * 109.58559 * 117.69053 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0631 -2.6640 2.4197 9 6 2.9154 -2.0247 3.4304 10 6 2.2054 -2.1100 4.7931 11 6 1.7614 -3.5399 5.0107 12 6 2.0873 -4.1846 6.1035 13 6 2.7752 -3.4579 7.2304 14 6 2.0135 -3.6813 8.5114 15 1 1.1203 -4.2884 8.5096 16 6 2.4568 -3.1106 9.6855 17 7 1.7918 -3.3051 10.8033 18 14 4.0014 -2.0599 9.6884 19 1 3.6373 -0.6438 9.4283 20 1 4.6687 -2.1645 11.0109 21 1 4.9259 -2.5361 8.6284 22 6 0.9315 -4.2069 3.9359 23 6 1.6685 -4.0673 2.5978 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.8732 -2.5426 3.4812 34 1 3.0764 -0.9798 3.1648 35 1 1.3371 -1.4512 4.7990 36 1 2.8950 -1.8154 5.5841 37 1 1.8629 -5.2368 6.1969 38 1 3.7910 -3.8374 7.3408 39 1 2.8080 -2.3912 7.0084 40 1 2.1036 -2.9033 11.6294 41 1 -0.0426 -3.7222 3.8707 42 1 0.8008 -5.2624 4.1744 43 1 1.0083 -4.3673 1.7840 44 1 2.5566 -4.6991 2.5997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205101530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = -73.556396 kcal Electronic energy + Delta-G solvation = -22698.649387 eV Core-core repulsion = 19423.218443 eV Total energy + Delta-G solvation = -3275.430943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89355 -38.60159 -36.70943 -34.78963 -34.00084 -32.54481 -31.27154 -29.84015 -27.59831 -27.54466 -26.74113 -23.94519 -23.33620 -22.05033 -20.76143 -19.46712 -18.30331 -17.08512 -16.76331 -16.51291 -16.04971 -15.30358 -14.73503 -14.63556 -14.43814 -14.06566 -13.88394 -13.62085 -13.50201 -13.14325 -12.79272 -12.61980 -12.32605 -12.25147 -12.06983 -12.00979 -11.88542 -11.58854 -11.53697 -11.42412 -11.15512 -10.91721 -10.68392 -10.47825 -10.28591 -10.01816 -9.95463 -9.71979 -9.28454 -8.87394 -8.57085 -7.83422 -6.08362 -4.06606 2.14298 2.78836 2.99052 3.26983 3.34966 3.36808 3.79723 4.40369 4.54050 4.58392 4.72431 4.95239 5.04741 5.20571 5.25771 5.26516 5.34239 5.38487 5.40969 5.48840 5.56994 5.57715 5.60510 5.67731 5.72677 5.77401 5.81616 5.95941 6.10765 6.11159 6.17170 6.24985 6.35357 6.42561 6.55535 6.57844 6.97880 7.06761 7.35425 7.41524 7.62230 7.82637 8.34149 8.49784 8.96491 9.52667 11.04976 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.003648 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.941027 B = 7673.253709 C = 8261.338465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.652 3.348 7 O -0.577 6.577 8 N -0.589 5.589 9 C 0.116 3.884 10 C -0.097 4.097 11 C -0.189 4.189 12 C -0.083 4.083 13 C -0.001 4.001 14 C -0.515 4.515 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.087 4.087 23 C 0.131 3.869 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 6.287 -22.562 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.407 3.593 7 O -0.467 6.467 8 N -0.328 5.328 9 C -0.006 4.006 10 C -0.135 4.135 11 C -0.189 4.189 12 C -0.101 4.101 13 C -0.037 4.037 14 C -0.553 4.553 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.125 4.125 23 C 0.010 3.990 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.579 6.235 -22.676 23.571 hybrid contribution 0.643 0.555 0.278 0.894 sum 2.222 6.791 -22.398 23.510 Atomic orbital electron populations 1.22510 0.94069 1.05086 1.02359 1.22034 0.94368 0.91510 0.82280 1.21853 1.02196 0.92658 1.03073 1.22507 1.01440 1.03532 0.96454 1.86308 1.71523 1.23763 1.46093 1.17987 0.78688 0.80461 0.82129 1.90850 1.41807 1.70459 1.43603 1.46996 1.52477 1.12549 1.20819 1.21904 0.92968 0.98220 0.87538 1.21252 1.00830 0.95277 0.96112 1.21217 1.04576 0.96107 0.96996 1.22914 0.95613 0.98663 0.92901 1.18974 0.96159 0.95366 0.93228 1.20969 1.11705 1.32194 0.90395 0.90995 1.25018 0.96871 0.96118 0.95427 1.69905 1.39812 1.45035 0.99338 0.86798 0.83983 0.81107 0.77579 1.20171 1.21296 1.18916 1.21015 0.98033 1.00655 0.92816 1.21673 0.99899 0.78889 0.98572 0.92136 0.91342 0.89360 0.91523 0.90295 0.91396 0.89376 0.91335 0.92295 0.91080 0.89330 0.91584 0.88878 0.88263 0.95547 0.95476 0.92645 0.91328 0.90351 0.88968 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 2 C 0.13 1.43 1.13 -90.62 -0.10 1.33 16 3 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 4 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 5 O -0.36 -4.75 8.49 -40.33 -0.34 -5.09 16 6 C 0.65 9.47 7.73 54.06 0.42 9.88 16 7 O -0.58 -9.11 11.26 -19.27 -0.22 -9.32 16 8 N -0.59 -8.17 2.90 -178.12 -0.52 -8.68 16 9 C 0.12 1.53 6.49 -3.39 -0.02 1.51 16 10 C -0.10 -1.52 5.88 -27.13 -0.16 -1.68 16 11 C -0.19 -3.18 5.31 -100.48 -0.53 -3.71 16 12 C -0.08 -1.62 9.09 -36.02 -0.33 -1.95 16 13 C 0.00 -0.02 4.18 -29.03 -0.12 -0.14 16 14 C -0.51 -14.45 9.65 -34.44 -0.33 -14.78 16 15 H 0.07 2.19 7.98 -52.49 -0.42 1.77 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 18 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 22 C -0.09 -1.23 6.20 -27.39 -0.17 -1.40 16 23 C 0.13 1.70 6.44 -3.64 -0.02 1.67 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.08 6.87 -51.93 -0.36 0.73 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.53 5.41 -51.93 -0.28 1.25 16 37 H 0.10 1.88 7.91 -52.49 -0.42 1.46 16 38 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 39 H 0.03 0.61 4.76 -51.93 -0.25 0.36 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 43 H 0.09 1.19 6.96 -51.93 -0.36 0.83 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.24 342.60 -7.62 -38.86 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.29 Total: 0.75 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.52 Total: -11.33 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.26 Total: -35.48 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.56 Total: -14.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.24 -7.62 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205101530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds