Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.48100 * 2 1 4 4 C 1.53093 * 109.47678 * 239.97787 * 2 1 3 5 5 C 1.53179 * 109.15936 * 182.40757 * 4 2 1 6 6 H 1.09002 * 109.53984 * 176.93809 * 5 4 2 7 7 C 1.50703 * 109.54464 * 297.11244 * 5 4 2 8 8 O 1.21279 * 119.99740 * 11.27589 * 7 5 4 9 9 N 1.34779 * 119.99875 * 191.26839 * 7 5 4 10 10 C 1.46925 * 120.62614 * 174.84305 * 9 7 5 11 11 C 1.53189 * 108.77656 * 233.62929 * 10 9 7 12 12 C 1.53044 * 109.31309 * 305.37081 * 11 10 9 13 13 C 1.53042 * 109.53723 * 61.36439 * 12 11 10 14 14 H 1.08992 * 109.52813 * 58.60149 * 13 12 11 15 15 C 1.50700 * 109.49568 * 178.68549 * 13 12 11 16 16 H 1.07999 * 120.00473 * 32.52969 * 15 13 12 17 17 C 1.37879 * 120.00096 * 212.53205 * 15 13 12 18 18 N 1.31519 * 119.99711 * 352.07274 * 17 15 13 19 19 Si 1.86802 * 120.00203 * 172.06998 * 17 15 13 20 20 H 1.48506 * 109.46732 * 60.00209 * 19 17 15 21 21 H 1.48498 * 109.47112 * 300.00447 * 19 17 15 22 22 H 1.48494 * 109.46954 * 179.97438 * 19 17 15 23 23 C 1.46922 * 120.63197 * 354.86949 * 9 7 5 24 24 C 1.53174 * 109.03777 * 56.98342 * 5 4 2 25 25 C 1.53085 * 109.16242 * 303.01928 * 24 5 4 26 26 O 1.42899 * 109.41836 * 57.60907 * 25 24 5 27 27 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46865 * 300.02012 * 1 2 3 29 29 H 1.09001 * 109.47491 * 60.01944 * 1 2 3 30 30 H 1.09005 * 109.52258 * 62.50637 * 4 2 1 31 31 H 1.08998 * 109.52596 * 302.31821 * 4 2 1 32 32 H 1.08994 * 109.58840 * 353.42162 * 10 9 7 33 33 H 1.09006 * 109.58377 * 113.70755 * 10 9 7 34 34 H 1.09006 * 109.49691 * 65.31515 * 11 10 9 35 35 H 1.08991 * 109.50112 * 185.38309 * 11 10 9 36 36 H 1.08995 * 109.46277 * 301.33982 * 12 11 10 37 37 H 1.08997 * 109.46111 * 181.38098 * 12 11 10 38 38 H 0.97004 * 119.99827 * 4.31920 * 18 17 15 39 39 H 1.09001 * 109.58796 * 6.58154 * 23 9 7 40 40 H 1.09005 * 109.58565 * 246.16047 * 23 9 7 41 41 H 1.08999 * 109.52062 * 62.92549 * 24 5 4 42 42 H 1.08997 * 109.52265 * 183.10770 * 24 5 4 43 43 H 1.09005 * 109.48171 * 297.62358 * 25 24 5 44 44 H 1.08999 * 109.49455 * 177.59675 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7707 -1.2123 6 1 3.9391 -1.3311 -2.0718 7 6 4.1211 0.6318 -1.2518 8 8 3.3790 1.5787 -1.0988 9 7 5.4378 0.8337 -1.4570 10 6 5.9714 2.1939 -1.6105 11 6 6.7719 2.2653 -2.9147 12 6 7.8386 1.1678 -2.9145 13 6 7.1626 -0.2030 -2.8371 14 1 6.4883 -0.3250 -3.6847 15 6 8.2121 -1.2839 -2.8696 16 1 9.1818 -1.1086 -2.4277 17 6 7.9344 -2.4969 -3.4635 18 7 6.7110 -2.7691 -3.8619 19 14 9.2959 -3.7534 -3.7023 20 1 9.8658 -4.1227 -2.3817 21 1 10.3623 -3.1715 -4.5564 22 1 8.7417 -4.9650 -4.3581 23 6 6.3666 -0.3023 -1.5320 24 6 4.0176 -1.4601 0.0806 25 6 3.4307 -0.7096 1.2788 26 8 2.0066 -0.6744 1.1663 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5141 0.8898 29 1 -0.3634 0.5135 -0.8901 30 1 1.7148 -0.1840 -2.1399 31 1 1.6442 -1.7373 -1.2712 32 1 5.1483 2.9074 -1.6475 33 1 6.6211 2.4289 -0.7673 34 1 6.1012 2.1205 -3.7616 35 1 7.2525 3.2404 -2.9937 36 1 8.4941 1.2986 -2.0536 37 1 8.4257 1.2319 -3.8306 38 1 6.0177 -2.0939 -3.7954 39 1 5.8041 -1.2358 -1.5173 40 1 7.0503 -0.2719 -0.6836 41 1 3.6613 -2.4902 0.0859 42 1 5.1058 -1.4499 0.1417 43 1 3.8193 0.3087 1.2957 44 1 3.7100 -1.2205 2.2003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = -104.873773 kcal Electronic energy + Delta-G solvation = -24053.428691 eV Core-core repulsion = 20776.639724 eV Total energy + Delta-G solvation = -3276.788967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60295 -38.46481 -36.81452 -33.75876 -33.55485 -32.66289 -31.69260 -29.84258 -27.77471 -25.43668 -24.76606 -24.01724 -22.36014 -21.89974 -20.99493 -19.75941 -18.19599 -17.04506 -16.41712 -16.11008 -15.85175 -15.30839 -14.92215 -14.18299 -14.04703 -14.00333 -13.82606 -13.76944 -13.11100 -12.93601 -12.61310 -12.41994 -12.25346 -12.04526 -11.89473 -11.75193 -11.57477 -11.41953 -10.95982 -10.87737 -10.66878 -10.55923 -10.44144 -10.26903 -10.22062 -10.09817 -9.52427 -9.33712 -8.86067 -8.70951 -8.57073 -7.98147 -6.52817 -4.24359 2.97239 3.34956 3.36522 3.49176 3.55570 3.96747 4.40380 4.76386 4.86275 4.98776 5.09765 5.18256 5.21179 5.40789 5.45000 5.48840 5.52661 5.62176 5.65862 5.74492 5.80542 5.86495 5.88767 5.98138 6.05556 6.08557 6.09024 6.16154 6.20326 6.25248 6.29165 6.39854 6.45099 6.51738 6.64753 6.71710 6.99549 7.21188 7.36520 7.45699 7.87785 8.07149 8.28422 8.57441 8.71461 9.47828 10.85885 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.005731 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.742926 B = 4884.632624 C = 5771.222386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.095 0.905 4 C -0.124 4.124 5 C -0.112 4.112 6 H 0.104 0.896 7 C 0.518 3.482 8 O -0.561 6.561 9 N -0.604 5.604 10 C 0.115 3.885 11 C -0.135 4.135 12 C -0.105 4.105 13 C 0.020 3.980 14 H 0.038 0.962 15 C -0.596 4.596 16 H 0.052 0.948 17 C 0.024 3.976 18 N -0.905 5.905 19 Si 1.066 2.934 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.282 1.282 23 C 0.105 3.895 24 C -0.150 4.150 25 C 0.064 3.936 26 O -0.385 6.385 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.269 0.731 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 4.753 6.140 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.012 3.988 3 H 0.112 0.888 4 C -0.162 4.162 5 C -0.133 4.133 6 H 0.122 0.878 7 C 0.307 3.693 8 O -0.441 6.441 9 N -0.336 5.336 10 C -0.008 4.008 11 C -0.173 4.173 12 C -0.143 4.143 13 C 0.000 4.000 14 H 0.056 0.944 15 C -0.635 4.635 16 H 0.070 0.930 17 C -0.181 4.181 18 N -0.541 5.541 19 Si 0.894 3.106 20 H -0.214 1.214 21 H -0.214 1.214 22 H -0.208 1.208 23 C -0.016 4.016 24 C -0.188 4.188 25 C -0.013 4.013 26 O -0.305 6.305 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.854 3.620 5.810 9.007 hybrid contribution 0.172 1.543 0.207 1.567 sum -5.682 5.163 6.017 9.755 Atomic orbital electron populations 1.21736 0.93865 1.02181 1.02006 1.22529 0.94338 0.97733 0.84177 0.88786 1.21981 0.93264 1.01513 0.99469 1.21360 0.96890 0.94248 1.00772 0.87753 1.20598 0.81941 0.91095 0.75647 1.90511 1.57708 1.44275 1.51652 1.48505 1.07101 1.08417 1.69550 1.21484 0.97820 0.84064 0.97431 1.21977 0.98704 0.99448 0.97178 1.21587 0.96597 0.95218 1.00859 1.19208 0.95188 0.92882 0.92719 0.94429 1.21863 0.99790 1.00376 1.41444 0.92997 1.25867 1.00267 0.98738 0.93239 1.70862 1.01311 1.35957 1.45950 0.83571 0.74519 0.75861 0.76643 1.21366 1.21359 1.20752 1.22631 0.91032 0.86800 1.01163 1.22285 1.02323 1.00468 0.93685 1.22496 0.81417 0.99401 0.97946 1.87833 1.20610 1.78387 1.43633 0.92391 0.92296 0.91343 0.90736 0.90832 0.90071 0.92294 0.92275 0.92032 0.93316 0.92649 0.91984 0.89983 0.92556 0.89922 0.89582 0.93519 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.56 37.16 0.36 -1.39 16 2 C 0.07 1.06 2.98 -26.68 -0.08 0.98 16 3 H 0.09 1.64 5.42 -51.93 -0.28 1.36 16 4 C -0.12 -1.89 4.61 -26.59 -0.12 -2.01 16 5 C -0.11 -1.86 2.17 -91.59 -0.20 -2.06 16 6 H 0.10 1.87 7.32 -51.93 -0.38 1.49 16 7 C 0.52 9.53 5.77 -10.98 -0.06 9.47 16 8 O -0.56 -11.07 12.98 5.56 0.07 -11.00 16 9 N -0.60 -11.13 2.97 -172.77 -0.51 -11.64 16 10 C 0.11 1.93 6.42 -3.71 -0.02 1.90 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.10 -2.04 5.15 -26.69 -0.14 -2.17 16 13 C 0.02 0.44 2.00 -91.65 -0.18 0.26 16 14 H 0.04 0.94 6.65 -51.93 -0.35 0.60 16 15 C -0.60 -15.11 8.31 -34.44 -0.29 -15.40 16 16 H 0.05 1.32 7.83 -52.49 -0.41 0.91 16 17 C 0.02 0.63 5.44 -17.82 -0.10 0.53 16 18 N -0.91 -25.00 13.62 55.43 0.75 -24.24 16 19 Si 1.07 23.42 29.91 -169.99 -5.08 18.34 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 C 0.11 2.10 4.48 -3.71 -0.02 2.09 16 24 C -0.15 -2.28 5.22 -26.60 -0.14 -2.42 16 25 C 0.06 0.95 6.62 37.20 0.25 1.19 16 26 O -0.39 -6.12 10.41 -35.23 -0.37 -6.49 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.27 7.34 6.68 -40.82 -0.27 7.07 16 39 H 0.08 1.70 4.66 -51.93 -0.24 1.45 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.35 5.84 -51.93 -0.30 1.05 16 43 H 0.05 0.74 7.38 -51.93 -0.38 0.36 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -27.99 330.68 -8.34 -36.33 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.28 Total: 5.18 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.91 Total: -11.45 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.24 Total: -35.88 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.29 Total: -17.49 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.08 Total: 18.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.99 -8.34 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.545 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds